Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001768

Physical Location & Seq

Genomic Coordinates Reverse (-)

51646527 .. 51648335

Gene Structure 1809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG330000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAGTGTGCCGAATCAACGCCGACTCTGCACTTATGAATCCAAACTCCCAAATCCTTGCCTTGAAAGGGATCCGCTGAATGTCCAAATATTCCTCAAAATGCATATGTCTGATTATGCTAAAAGATGGCTGAAGGAAATGCAAAATATTGATGAGGACCACACCTTAACTCAACTTGAAACAGCATGGCAAAATCTGGCTGTGGATGCAGAGGATCCAGAAACTCTAGCCAACCTGGTCGTATGCTGTATTCACCTTGGAAACCTACCTTCTCGTTTTGTCAGCCAATCAAGACTTGCACATCTAGACCACGTCCTCGTCAAAGGTGCCTCAACTGTAGAAGAGAGCTTTGACAGAGCTCTTCAATCAGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005798 GO:0005829 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0008150 GO:0012505 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coatomer_E

Protein Analysis

125

Amino Acids

14.28

Weight (kDa)

5.44

Isoelectric Point (pI)

68.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Coatomer_E	PF04733	21 - 69	3.1e-15	Coatomer epsilon subunit
Coatomer_E	PF04733	66 - 124	9.1e-12	Coatomer epsilon subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001768)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501101 RchiOBHm_Chr1g0337861 RchiOBHm_Chr3g0465841 RchiOBHm_Chr3g0478461 RchiOBHm_Chr4g0403301 RchiOBHm_Chr4g0426291 RchiOBHm_Chr5g0002501 RchiOBHm_Chr5g0047701 RchiOBHm_Chr5g0057331 RchiOBHm_Chr6g0289621 RchiOBHm_Chr6g0289631
rosa_laevigata	RLG00000014682 RLG00000018045
rosa_multiflora	Rmu_co8182516.1_g000001 Rmu_sc0000335.1_g000004 Rmu_sc0041332.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155570 Rroxscaffold_3G00238240
rosa_rugosa	Rorug04G0219900 Rorug04G0220000 Rorug04G0420300 Rorug04G0420400 Rorug04G0420500 Rorug04G0420600 Rorug05G0111700 Rorug05G0325900 Rorug05G0326000 Rorug06G0152100 Rorug06G0152200 Rorug06G0152300 Rorug07G0231200
rosa_samantha	Rh2AG305300 Rh3AG218400 Rh3BG144900 Rh3BG365600 Rh3CG146200 Rh3DG146000 Rh5AG097100 Rh5DG428000 Rh6AG164100 Rh6AG387400 Rh6BG079000 Rh6BG285500 Rh6BG475400 Rh6CG330000 Rh7AG293100 Rh7CG313100
rosa_wichuraiana	Rw6G033750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	326
AciI	CCGC	1 cut(s)	74
AclWI	GGATC	4 cut(s)	65, 78, 209, 222
AcuI	CTGAAG	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	3 cut(s)	65, 179, 365
AjiI	CACGTC	1 cut(s)	313
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	2 cut(s)	348, 359
AluI	AGCT	2 cut(s)	348, 359
Alw21I	GWGCWC	1 cut(s)	361
AlwI	GGATC	4 cut(s)	65, 78, 209, 222
AspS9I	GGNCC	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	157
BamHI	GGATCC	2 cut(s)	70, 214
BanI	GGYRCC	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	361
Bbv12I	GWGCWC	1 cut(s)	361
BccI	CCATC	1 cut(s)	120
BciT130I	CCWGG	1 cut(s)	236
BfaI	CTAG	2 cut(s)	227, 305
BfmI	CTRYAG	1 cut(s)	336
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	1 cut(s)	157
BmgBI	CACGTC	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	3 cut(s)	72, 216, 328
BmrFI	CCNGG	1 cut(s)	236
BmsI	GCATC	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	1 cut(s)	256
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	67
BsgI	GTGCAG	1 cut(s)	13
BshNI	GGYRCC	1 cut(s)	326
BsiHKAI	GWGCWC	1 cut(s)	361
BslI	CCNNNNNNNGG	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	2 cut(s)	70, 214
BspACI	CCGC	1 cut(s)	74
BspLI	GGNNCC	3 cut(s)	72, 216, 328
BspPI	GGATC	4 cut(s)	65, 78, 209, 222
BspQI	GCTCTTC	1 cut(s)	366
BspT107I	GGYRCC	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	2 cut(s)	70, 214
BssT1I	CCWWGG	1 cut(s)	256
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	1 cut(s)	337
Bst6I	CTCTTC	2 cut(s)	336, 366
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	2 cut(s)	73, 217
BstMBI	GATC	2 cut(s)	70, 214
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 206
BstNI	CCWGG	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	234
BstSFI	CTRYAG	1 cut(s)	336
BstX2I	RGATCY	2 cut(s)	70, 214
BstYI	RGATCY	2 cut(s)	70, 214
BtrI	CACGTC	1 cut(s)	313
BtsCI	GGATG	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	157
CsiI	ACCWGGT	1 cut(s)	234
CviAII	CATG	1 cut(s)	186
CviJI	RGCY	6 cut(s)	130, 200, 230, 285, 348, 359
CviKI_1	RGCY	6 cut(s)	130, 200, 230, 285, 348, 359
DpnI	GATC	2 cut(s)	72, 216
DpnII	GATC	2 cut(s)	70, 214
Eam1104I	CTCTTC	2 cut(s)	336, 366
EarI	CTCTTC	2 cut(s)	336, 366
Ecl136II	GAGCTC	1 cut(s)	359
Eco130I	CCWWGG	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	361
Eco47I	GGWCC	1 cut(s)	157
Eco53kI	GAGCTC	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	152
EcoICRI	GAGCTC	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	256
EcoT22I	ATGCAT	1 cut(s)	105
EcoT38I	GRGCYC	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	256
FaeI	CATG	1 cut(s)	189
FaiI	YATR	6 cut(s)	36, 105, 107, 117, 187, 244
FatI	CATG	1 cut(s)	185
FauNDI	CATATG	1 cut(s)	105
FokI	GGATG	1 cut(s)	218
FriOI	GRGCYC	1 cut(s)	361
FspBI	CTAG	2 cut(s)	227, 305
Hin1II	CATG	1 cut(s)	189
HinfI	GANTC	3 cut(s)	13, 24, 38
HphI	GGTGA	1 cut(s)	245
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	3 cut(s)	218, 291, 305
HpyAV	CCTTC	2 cut(s)	127, 279
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	5 cut(s)	30, 103, 142, 209, 299
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 206
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	1 cut(s)	189
Kzo9I	GATC	2 cut(s)	70, 214
LguI	GCTCTTC	1 cut(s)	366
LpnPI	CCDG	4 cut(s)	182, 221, 231, 248
LweI	GCATC	1 cut(s)	196
MabI	ACCWGGT	1 cut(s)	234
MaeI	CTAG	2 cut(s)	227, 305
MaeII	ACGT	1 cut(s)	312
MalI	GATC	2 cut(s)	72, 216
MboI	GATC	2 cut(s)	70, 214
MboII	GAAGA	2 cut(s)	353, 353
MflI	RGATCY	2 cut(s)	70, 214
MhlI	GDGCHC	1 cut(s)	361
MlyI	GAGTC	1 cut(s)	18
MnlI	CCTC	5 cut(s)	104, 148, 205, 326, 340
Mph1103I	ATGCAT	1 cut(s)	105
MseI	TTAA	1 cut(s)	167
MspA1I	CMGCKG	1 cut(s)	76
MspR9I	CCNGG	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	2 cut(s)	27, 206
NdeI	CATATG	1 cut(s)	105
NdeII	GATC	2 cut(s)	70, 214
NlaIII	CATG	1 cut(s)	189
NlaIV	GGNNCC	3 cut(s)	72, 216, 328
NsiI	ATGCAT	1 cut(s)	105
PciSI	GCTCTTC	1 cut(s)	366
PfeI	GAWTC	2 cut(s)	13, 38
PflFI	GACNNNGTC	1 cut(s)	311
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
Psp124BI	GAGCTC	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	3 cut(s)	72, 216, 328
PspPI	GGNCC	1 cut(s)	157
PsuI	RGATCY	2 cut(s)	70, 214
PsyI	GACNNNGTC	1 cut(s)	311
SacI	GAGCTC	1 cut(s)	361
SapI	GCTCTTC	1 cut(s)	366
SaqAI	TTAA	1 cut(s)	167
Sau3AI	GATC	2 cut(s)	70, 214
Sau96I	GGNCC	1 cut(s)	157
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	1 cut(s)	236
SduI	GDGCHC	1 cut(s)	361
SetI	ASST	9 cut(s)	167, 237, 258, 267, 271, 315, 328, 350, 361
SexAI	ACCWGGT	1 cut(s)	234
SfaNI	GCATC	1 cut(s)	196
SfcI	CTRYAG	1 cut(s)	336
SinI	GGWCC	1 cut(s)	157
SsiI	CCGC	1 cut(s)	74
SspI	AATATT	2 cut(s)	90, 148
SspMI	CTAG	2 cut(s)	227, 305
SstI	GAGCTC	1 cut(s)	361
StyD4I	CCNGG	1 cut(s)	234
StyI	CCWWGG	1 cut(s)	256
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	1 cut(s)	315
TfiI	GAWTC	2 cut(s)	13, 38
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TspDTI	ATGAA	1 cut(s)	51
Tth111I	GACNNNGTC	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	157
XbaI	TCTAGA	1 cut(s)	304
XspI	CTAG	2 cut(s)	227, 305
Zsp2I	ATGCAT	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.