Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001768

Physical Location & Seq

Genomic Coordinates Forward (+)

58079588 .. 58080140

Gene Structure 553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0420600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGTATCAGCAACTGGACGGATGACGCTCAAGGTAGATGTTTACAGCTTCGGAGTAATATTAATGGAGTTGATCACGGGAAGAAAAGCAATTGACGAAAGCCAGCCTGAGGAGAGTTGTCACCTAGTGACATGGTTTCGTAGAAAGCTCATTAAAACAGATGCACTCCCAGAGATGGTTGATCCAAGAATTAATGTCAATGAGGAAACAATTTCTATCAATGTACTTTCATCGCTTGTTGAGCAATGGAAGCCATCTAAGCAAGAAGATTTGGATGAGATGGATGCAATCAACTTCGATGTGCCGTTAAATGAAGCAGTAAAGATGTGGCAGGCTGCGGAGGGCAAAAGCAACATTGATGAATCCTCATCTTCATCGATCTTTCCTAGCGGGCATACCACCCAGACCAGCATTCCTAATCGGCCTTCTGGATTTGCAGAGTCGTTTACATCATCAGATGGGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005798 GO:0005829 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0008150 GO:0012505 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coatomer_E

Protein Analysis

155

Amino Acids

17.27

Weight (kDa)

4.68

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001768)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501101 RchiOBHm_Chr1g0337861 RchiOBHm_Chr3g0465841 RchiOBHm_Chr3g0478461 RchiOBHm_Chr4g0403301 RchiOBHm_Chr4g0426291 RchiOBHm_Chr5g0002501 RchiOBHm_Chr5g0047701 RchiOBHm_Chr5g0057331 RchiOBHm_Chr6g0289621 RchiOBHm_Chr6g0289631
rosa_laevigata	RLG00000014682 RLG00000018045
rosa_multiflora	Rmu_co8182516.1_g000001 Rmu_sc0000335.1_g000004 Rmu_sc0041332.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155570 Rroxscaffold_3G00238240
rosa_rugosa	Rorug04G0219900 Rorug04G0220000 Rorug04G0420300 Rorug04G0420400 Rorug04G0420500 Rorug04G0420600 Rorug05G0111700 Rorug05G0325900 Rorug05G0326000 Rorug06G0152100 Rorug06G0152200 Rorug06G0152300 Rorug07G0231200
rosa_samantha	Rh2AG305300 Rh3AG218400 Rh3BG144900 Rh3BG365600 Rh3CG146200 Rh3DG146000 Rh5AG097100 Rh5DG428000 Rh6AG164100 Rh6AG387400 Rh6BG079000 Rh6BG285500 Rh6BG475400 Rh6CG330000 Rh7AG293100 Rh7CG313100
rosa_wichuraiana	Rw6G033750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	338, 390, 463
AclWI	GGATC	1 cut(s)	176
AdeI	CACNNNGTG	1 cut(s)	127
AfaI	GTAC	1 cut(s)	225
AfiI	CCNNNNNNNGG	2 cut(s)	109, 175
AluBI	AGCT	2 cut(s)	48, 148
AluI	AGCT	2 cut(s)	48, 148
AlwI	GGATC	1 cut(s)	176
AlwNI	CAGNNNCTG	1 cut(s)	14
AoxI	GGCC	1 cut(s)	422
ApeKI	GCWGC	1 cut(s)	335
AseI	ATTAAT	2 cut(s)	62, 192
AsuHPI	GGTGA	1 cut(s)	113
AxyI	CCTNAGG	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	322
BccI	CCATC	4 cut(s)	169, 262, 274, 452
BceAI	ACGGC	1 cut(s)	289
BclI	TGATCA	1 cut(s)	72
BfaI	CTAG	2 cut(s)	125, 387
BisI	GCNGC	1 cut(s)	336
BlsI	GCNGC	1 cut(s)	337
BmsI	GCATC	2 cut(s)	151, 274
BpuEI	CTTGAG	1 cut(s)	14
Bsa29I	ATCGAT	1 cut(s)	377
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 175
Bse1I	ACTGG	1 cut(s)	19
Bse21I	CCTNAGG	1 cut(s)	108
Bse3DI	GCAATG	1 cut(s)	251
BseCI	ATCGAT	1 cut(s)	377
BseGI	GGATG	3 cut(s)	27, 280, 289
BseLI	CCNNNNNNNGG	2 cut(s)	109, 175
BseMI	GCAATG	1 cut(s)	251
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	1 cut(s)	19
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	1 cut(s)	322
BshFI	GGCC	1 cut(s)	424
BshVI	ATCGAT	1 cut(s)	377
BslI	CCNNNNNNNGG	2 cut(s)	109, 175
BsmI	GAATGC	1 cut(s)	411
BsnI	GGCC	1 cut(s)	424
Bsp143I	GATC	3 cut(s)	72, 181, 378
BspACI	CCGC	3 cut(s)	338, 390, 463
BspANI	GGCC	1 cut(s)	424
BspCNI	CTCAG	1 cut(s)	100
BspDI	ATCGAT	1 cut(s)	377
BspPI	GGATC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	251
BsrI	ACTGG	1 cut(s)	19
BssMI	GATC	3 cut(s)	72, 181, 378
BstC8I	GCNNGC	3 cut(s)	104, 333, 392
BstDEI	CTNAG	2 cut(s)	108, 258
BstF5I	GGATG	3 cut(s)	27, 280, 289
BstKTI	GATC	3 cut(s)	75, 184, 381
BstMBI	GATC	3 cut(s)	72, 181, 378
BstMWI	GCNNNNNNNGC	3 cut(s)	241, 250, 259
BstV1I	GCAGC	1 cut(s)	322
Bsu15I	ATCGAT	1 cut(s)	377
Bsu36I	CCTNAGG	1 cut(s)	108
BsuRI	GGCC	1 cut(s)	424
BsuTUI	ATCGAT	1 cut(s)	377
BtgZI	GCGATG	1 cut(s)	216
BtsCI	GGATG	3 cut(s)	27, 280, 289
Cac8I	GCNNGC	3 cut(s)	104, 333, 392
CaiI	CAGNNNCTG	1 cut(s)	14
ClaI	ATCGAT	1 cut(s)	377
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	1 cut(s)	132
CviJI	RGCY	7 cut(s)	48, 102, 106, 148, 253, 335, 424
CviKI_1	RGCY	7 cut(s)	48, 102, 106, 148, 253, 335, 424
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	2 cut(s)	108, 258
DpnI	GATC	3 cut(s)	74, 183, 380
DpnII	GATC	3 cut(s)	72, 181, 378
DraIII	CACNNNGTG	1 cut(s)	127
Eco81I	CCTNAGG	1 cut(s)	108
FaeI	CATG	1 cut(s)	135
FaiI	YATR	2 cut(s)	133, 396
FatI	CATG	1 cut(s)	131
FauI	CCCGC	1 cut(s)	383
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	1 cut(s)	336
FokI	GGATG	3 cut(s)	34, 287, 296
Fsp4HI	GCNGC	1 cut(s)	336
FspBI	CTAG	2 cut(s)	125, 387
GluI	GCNGC	1 cut(s)	336
HaeIII	GGCC	1 cut(s)	424
HgaI	GACGC	1 cut(s)	34
Hin1II	CATG	1 cut(s)	135
HinfI	GANTC	2 cut(s)	362, 440
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	2 cut(s)	43, 447
Hpy188I	TCNGA	2 cut(s)	53, 457
Hpy188III	TCNNGA	1 cut(s)	429
Hpy8I	GTNNAC	2 cut(s)	43, 447
HpyAV	CCTTC	1 cut(s)	435
HpyCH4V	TGCA	3 cut(s)	164, 287, 437
HpyF10VI	GCNNNNNNNGC	3 cut(s)	241, 250, 259
HpyF3I	CTNAG	2 cut(s)	108, 258
Hsp92II	CATG	1 cut(s)	135
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	3 cut(s)	72, 181, 378
LpnPI	CCDG	7 cut(s)	116, 120, 183, 317, 414, 416, 421
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	2 cut(s)	151, 274
MaeI	CTAG	2 cut(s)	125, 387
MaeIII	GTNAC	2 cut(s)	119, 127
MalI	GATC	3 cut(s)	74, 183, 380
MboI	GATC	3 cut(s)	72, 181, 378
MboII	GAAGA	3 cut(s)	93, 278, 363
MfeI	CAATTG	1 cut(s)	90
MluCI	AATT	3 cut(s)	90, 189, 210
MlyI	GAGTC	1 cut(s)	449
MnlI	CCTC	4 cut(s)	103, 196, 334, 376
MseI	TTAA	4 cut(s)	62, 153, 192, 308
MunI	CAATTG	1 cut(s)	90
Mva1269I	GAATGC	1 cut(s)	411
MwoI	GCNNNNNNNGC	3 cut(s)	241, 250, 259
NdeII	GATC	3 cut(s)	72, 181, 378
NlaIII	CATG	1 cut(s)	135
NmuCI	GTSAC	2 cut(s)	119, 127
PctI	GAATGC	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	362
PkrI	GCNGC	1 cut(s)	337
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
PshBI	ATTAAT	2 cut(s)	62, 192
PstNI	CAGNNNCTG	1 cut(s)	14
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
SaqAI	TTAA	4 cut(s)	62, 153, 192, 308
SatI	GCNGC	1 cut(s)	336
Sau3AI	GATC	3 cut(s)	72, 181, 378
SchI	GAGTC	1 cut(s)	449
SetI	ASST	4 cut(s)	36, 50, 126, 150
SfaNI	GCATC	2 cut(s)	151, 274
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	3 cut(s)	90, 189, 210
SsiI	CCGC	3 cut(s)	338, 390, 463
SspI	AATATT	1 cut(s)	60
SspMI	CTAG	2 cut(s)	125, 387
TaqI	TCGA	2 cut(s)	297, 377
TasI	AATT	3 cut(s)	90, 189, 210
TatI	WGTACW	1 cut(s)	223
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	4 cut(s)	62, 153, 192, 308
Tru9I	TTAA	4 cut(s)	62, 153, 192, 308
TseFI	GTSAC	2 cut(s)	119, 127
TseI	GCWGC	1 cut(s)	335
Tsp45I	GTSAC	2 cut(s)	119, 127
TspDTI	ATGAA	4 cut(s)	219, 327, 363, 375
TspGWI	ACGGA	1 cut(s)	34
VspI	ATTAAT	2 cut(s)	62, 192
XspI	CTAG	2 cut(s)	125, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.