Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001768

Physical Location & Seq

Genomic Coordinates Forward (+)

58078134 .. 58078829

Gene Structure 696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0420500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGTAAAGTGCAAAGTCCAAATTCATTGGTTATACGTACATCCTCGTCACTCTGGTGATCAAAATGCTGTCAAAATTACTGTTGCTAACAGGGTTAATGGCATTGGAAGTGAAAATCACAGTAACGGACCTACTGATATTCAAGATGAGGCTGGAAATATGATAATATCAATCCAAGTTTTGAGGAGTGTGACCAATAACTTCAATGAAGATAAGATATTGGGAAAAGGTGGGTTTGGAACTGTGTATGAAGGAGAATTGCATGATGGAACGAAAATTGCAGTGAAGAGAATGGAATCCGGAGTGGTAGCTGAGAAAGGCCTGCATGAGTTCAAGTCTGAGATTGCAGTTCTTACTAAGGTACGACATCGCCACTTGGTGGGACTTCTTGGATATTGTTTGGATGGGAATGAGAGGCTTCTTGTCTATGAGCACATGCCGCAGGGGACGCTTAGTAGACATTTGTTCAACTGGAAAGAAGAAGGGCTGGAGCCACTTGAATGGACTAGAAGACTAACCATTGCCTTGGATGTTGCGAGGGGTGTTCAATACGTGCATGGTTTGGCCAACGAAATCTTCATTCATAGAGACCTTAAACCTTCAAATATTTTACTTGGAGATGATATGCGGGCGAAAGTGGCAGATTTTGGATTGGTTTGTCTTGCTCCAGCAGGGAAAGCCTCTATTGAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005798 GO:0005829 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0008150 GO:0012505 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coatomer_E

Protein Analysis

231

Amino Acids

25.7

Weight (kDa)

6.87

Isoelectric Point (pI)

25.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	68 - 224	1.3e-28	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	71 - 219	1.8e-30	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001768)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501101 RchiOBHm_Chr1g0337861 RchiOBHm_Chr3g0465841 RchiOBHm_Chr3g0478461 RchiOBHm_Chr4g0403301 RchiOBHm_Chr4g0426291 RchiOBHm_Chr5g0002501 RchiOBHm_Chr5g0047701 RchiOBHm_Chr5g0057331 RchiOBHm_Chr6g0289621 RchiOBHm_Chr6g0289631
rosa_laevigata	RLG00000014682 RLG00000018045
rosa_multiflora	Rmu_co8182516.1_g000001 Rmu_sc0000335.1_g000004 Rmu_sc0041332.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155570 Rroxscaffold_3G00238240
rosa_rugosa	Rorug04G0219900 Rorug04G0220000 Rorug04G0420300 Rorug04G0420400 Rorug04G0420500 Rorug04G0420600 Rorug05G0111700 Rorug05G0325900 Rorug05G0326000 Rorug06G0152100 Rorug06G0152200 Rorug06G0152300 Rorug07G0231200
rosa_samantha	Rh2AG305300 Rh3AG218400 Rh3BG144900 Rh3BG365600 Rh3CG146200 Rh3DG146000 Rh5AG097100 Rh5DG428000 Rh6AG164100 Rh6AG387400 Rh6BG079000 Rh6BG285500 Rh6BG475400 Rh6CG330000 Rh7AG293100 Rh7CG313100
rosa_wichuraiana	Rw6G033750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	379
AccI	GTMKAC	1 cut(s)	457
AccIII	TCCGGA	1 cut(s)	299
AciI	CCGC	2 cut(s)	440, 628
AcoI	YGGCCR	1 cut(s)	564
AcsI	RAATTY	1 cut(s)	21
AdeI	CACNNNGTG	1 cut(s)	379
AfaI	GTAC	2 cut(s)	39, 363
AfiI	CCNNNNNNNGG	1 cut(s)	379
AgsI	TTSAA	7 cut(s)	143, 205, 334, 469, 500, 548, 603
AjuI	GAANNNNNNNTTGG	2 cut(s)	560, 592
AleI	CACNNNNGTG	1 cut(s)	54
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
Alw21I	GWGCWC	1 cut(s)	435
Alw26I	GTCTC	1 cut(s)	582
Aor13HI	TCCGGA	1 cut(s)	299
AoxI	GGCC	2 cut(s)	319, 564
ApoI	RAATTY	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	128
BalI	TGGCCA	1 cut(s)	566
BbsI	GAAGAC	1 cut(s)	517
Bbv12I	GWGCWC	1 cut(s)	435
BccI	CCATC	2 cut(s)	260, 398
BclI	TGATCA	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	582
BfaI	CTAG	1 cut(s)	507
BisI	GCNGC	1 cut(s)	440
BlsI	GCNGC	1 cut(s)	441
Bme18I	GGWCC	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	1 cut(s)	492
BpiI	GAAGAC	1 cut(s)	517
BpmI	CTGGAG	2 cut(s)	509, 651
BsaAI	YACGTR	2 cut(s)	37, 553
BsaI	GGTCTC	1 cut(s)	582
BsaJI	CCNNGG	1 cut(s)	525
BsaWI	WCCGGW	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
Bse1I	ACTGG	1 cut(s)	476
Bse3DI	GCAATG	1 cut(s)	519
BseAI	TCCGGA	1 cut(s)	299
BseDI	CCNNGG	1 cut(s)	525
BseGI	GGATG	3 cut(s)	40, 409, 535
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	2 cut(s)	303, 330
BseNI	ACTGG	1 cut(s)	476
BseRI	GAGGAG	1 cut(s)	199
BshFI	GGCC	2 cut(s)	321, 566
BsiHKAI	GWGCWC	1 cut(s)	435
BsiSI	CCGG	1 cut(s)	300
BslFI	GGGAC	2 cut(s)	396, 460
BslI	CCNNNNNNNGG	1 cut(s)	379
BsmAI	GTCTC	1 cut(s)	582
BsmFI	GGGAC	2 cut(s)	396, 460
BsnI	GGCC	2 cut(s)	321, 566
Bso31I	GGTCTC	1 cut(s)	582
Bsp1286I	GDGCHC	1 cut(s)	435
Bsp13I	TCCGGA	1 cut(s)	299
Bsp143I	GATC	1 cut(s)	58
BspACI	CCGC	2 cut(s)	440, 628
BspANI	GGCC	2 cut(s)	321, 566
BspCNI	CTCAG	2 cut(s)	304, 331
BspEI	TCCGGA	1 cut(s)	299
BspLI	GGNNCC	1 cut(s)	492
BspTNI	GGTCTC	1 cut(s)	582
BsrDI	GCAATG	1 cut(s)	519
BsrI	ACTGG	1 cut(s)	476
BssECI	CCNNGG	1 cut(s)	525
BssMI	GATC	1 cut(s)	58
BssT1I	CCWWGG	1 cut(s)	525
Bst4CI	ACNGT	3 cut(s)	82, 122, 244
Bst6I	CTCTTC	1 cut(s)	281
BstBAI	YACGTR	2 cut(s)	37, 553
BstC8I	GCNNGC	2 cut(s)	323, 630
BstDEI	CTNAG	4 cut(s)	312, 339, 357, 452
BstF5I	GGATG	3 cut(s)	40, 409, 535
BstKTI	GATC	1 cut(s)	61
BstMAI	GTCTC	1 cut(s)	582
BstMBI	GATC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	4 cut(s)	439, 448, 638, 677
BstNSI	RCATGY	1 cut(s)	439
BstSNI	TACGTA	1 cut(s)	37
BstV2I	GAAGAC	1 cut(s)	517
BstXI	CCANNNNNNTGG	2 cut(s)	501, 526
BsuRI	GGCC	2 cut(s)	321, 566
BtgZI	GCGATG	1 cut(s)	353
BtsCI	GGATG	3 cut(s)	40, 409, 535
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	2 cut(s)	323, 630
Cfr13I	GGNCC	1 cut(s)	128
CseI	GACGC	1 cut(s)	457
Csp6I	GTAC	2 cut(s)	38, 362
CviAII	CATG	4 cut(s)	263, 326, 436, 557
CviJI	RGCY	8 cut(s)	152, 311, 321, 418, 487, 493, 566, 680
CviKI_1	RGCY	8 cut(s)	152, 311, 321, 418, 487, 493, 566, 680
CviQI	GTAC	2 cut(s)	38, 362
DdeI	CTNAG	4 cut(s)	312, 339, 357, 452
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
DraIII	CACNNNGTG	1 cut(s)	379
EaeI	YGGCCR	1 cut(s)	564
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
Eco105I	TACGTA	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	525
Eco147I	AGGCCT	1 cut(s)	321
Eco31I	GGTCTC	1 cut(s)	582
Eco47I	GGWCC	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	525
ErhI	CCWWGG	1 cut(s)	525
FaeI	CATG	4 cut(s)	266, 329, 439, 560
FaqI	GGGAC	2 cut(s)	396, 460
FatI	CATG	4 cut(s)	262, 325, 435, 556
FauI	CCCGC	1 cut(s)	621
FbaI	TGATCA	1 cut(s)	58
FblI	GTMKAC	1 cut(s)	457
Fnu4HI	GCNGC	1 cut(s)	440
FokI	GGATG	3 cut(s)	27, 416, 542
Fsp4HI	GCNGC	1 cut(s)	440
FspBI	CTAG	1 cut(s)	507
GluI	GCNGC	1 cut(s)	440
GsuI	CTGGAG	2 cut(s)	509, 651
HaeIII	GGCC	2 cut(s)	321, 566
HapII	CCGG	1 cut(s)	300
HgaI	GACGC	1 cut(s)	457
Hin1II	CATG	4 cut(s)	266, 329, 439, 560
HinfI	GANTC	1 cut(s)	296
HpaII	CCGG	1 cut(s)	300
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	1 cut(s)	458
Hpy188I	TCNGA	1 cut(s)	340
Hpy188III	TCNNGA	2 cut(s)	143, 300
Hpy8I	GTNNAC	1 cut(s)	458
HpyAV	CCTTC	3 cut(s)	245, 476, 609
HpyCH4III	ACNGT	3 cut(s)	82, 122, 244
HpyCH4IV	ACGT	2 cut(s)	36, 552
HpyCH4V	TGCA	6 cut(s)	12, 262, 281, 325, 347, 556
HpyF10VI	GCNNNNNNNGC	4 cut(s)	439, 448, 638, 677
HpyF3I	CTNAG	4 cut(s)	312, 339, 357, 452
HpySE526I	ACGT	2 cut(s)	36, 552
Hsp92II	CATG	4 cut(s)	266, 329, 439, 560
Kpn2I	TCCGGA	1 cut(s)	299
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	1 cut(s)	58
LmnI	GCTCC	2 cut(s)	490, 670
MaeI	CTAG	1 cut(s)	507
MaeII	ACGT	2 cut(s)	36, 552
MaeIII	GTNAC	3 cut(s)	47, 122, 190
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MboII	GAAGA	5 cut(s)	221, 298, 491, 522, 568
MhlI	GDGCHC	1 cut(s)	435
MlsI	TGGCCA	1 cut(s)	566
MluCI	AATT	4 cut(s)	21, 75, 257, 276
MluNI	TGGCCA	1 cut(s)	566
MnlI	CCTC	6 cut(s)	54, 142, 177, 408, 531, 691
Mox20I	TGGCCA	1 cut(s)	566
MroI	TCCGGA	1 cut(s)	299
MscI	TGGCCA	1 cut(s)	566
MseI	TTAA	2 cut(s)	96, 594
MslI	CAYNNNNRTG	2 cut(s)	54, 499
Msp20I	TGGCCA	1 cut(s)	566
MspI	CCGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	4 cut(s)	439, 448, 638, 677
NdeII	GATC	1 cut(s)	58
NlaIII	CATG	4 cut(s)	266, 329, 439, 560
NlaIV	GGNNCC	1 cut(s)	492
NmuCI	GTSAC	2 cut(s)	47, 190
NspI	RCATGY	1 cut(s)	439
OliI	CACNNNNGTG	1 cut(s)	54
PceI	AGGCCT	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	296
PflMI	CCANNNNNTGG	1 cut(s)	379
PkrI	GCNGC	1 cut(s)	441
Ppu21I	YACGTR	2 cut(s)	37, 553
PspN4I	GGNNCC	1 cut(s)	492
PspPI	GGNCC	1 cut(s)	128
RsaI	GTAC	2 cut(s)	39, 363
RsaNI	GTAC	2 cut(s)	38, 362
RseI	CAYNNNNRTG	2 cut(s)	54, 499
SaqAI	TTAA	2 cut(s)	96, 594
SatI	GCNGC	1 cut(s)	440
Sau3AI	GATC	1 cut(s)	58
Sau96I	GGNCC	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	435
SetI	ASST	8 cut(s)	39, 133, 232, 313, 363, 555, 594, 601
SinI	GGWCC	1 cut(s)	128
SmiMI	CAYNNNNRTG	2 cut(s)	54, 499
SnaBI	TACGTA	1 cut(s)	37
Sse9I	AATT	4 cut(s)	21, 75, 257, 276
SseBI	AGGCCT	1 cut(s)	321
SsiI	CCGC	2 cut(s)	440, 628
SspI	AATATT	1 cut(s)	607
SspMI	CTAG	1 cut(s)	507
StuI	AGGCCT	1 cut(s)	321
StyI	CCWWGG	1 cut(s)	525
TaaI	ACNGT	3 cut(s)	82, 122, 244
TaiI	ACGT	2 cut(s)	39, 555
TasI	AATT	4 cut(s)	21, 75, 257, 276
TauI	GCSGC	1 cut(s)	442
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	2 cut(s)	96, 594
Tru9I	TTAA	2 cut(s)	96, 594
TscAI	CASTG	1 cut(s)	288
TseFI	GTSAC	2 cut(s)	47, 190
Tsp45I	GTSAC	2 cut(s)	47, 190
TspDTI	ATGAA	5 cut(s)	14, 222, 264, 568, 572
TspGWI	ACGGA	1 cut(s)	141
TspRI	CASTG	1 cut(s)	288
Van91I	CCANNNNNTGG	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	128
XapI	RAATTY	1 cut(s)	21
XceI	RCATGY	1 cut(s)	439
XmiI	GTMKAC	1 cut(s)	457
XspI	CTAG	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.