Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001768

Physical Location & Seq

Genomic Coordinates Forward (+)

26390299 .. 26393608

Gene Structure 3310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00238240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGATCTCTGACGAGAGCTTGGAGCTGATTGCCAAGTCTTTCAAGAATTTCAAGCTCCTTGTGCTTTCGTCCTGTGAGGGATTTAGTACCGATGGCGTTGCCTCCATTGCGGCTAATTGCAGGTTCATCTCTCTGCTGCTATGGTTATCTATTGCACTGTGTTTGCTGATGTTCATCACTCTCTCTCTCTCTCTCTCTCTCTCTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000822 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008144 GO:0008150 GO:0008152 GO:0009267 GO:0009555 GO:0009605 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0009991 GO:0010011 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010152 GO:0010311 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016036 GO:0016567 GO:0016740 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031461 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033554 GO:0036094 GO:0036211 GO:0038023 GO:0038198 GO:0042221 GO:0042562 GO:0042594 GO:0043167 GO:0043168 GO:0043170 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045013 GO:0045014 GO:0045892 GO:0045934 GO:0045990 GO:0046015 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060089 GO:0060255 GO:0061458 GO:0061984 GO:0061985 GO:0061986 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

69

Amino Acids

7.5

Weight (kDa)

4.94

Isoelectric Point (pI)

19.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001768)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501101 RchiOBHm_Chr1g0337861 RchiOBHm_Chr3g0465841 RchiOBHm_Chr3g0478461 RchiOBHm_Chr4g0403301 RchiOBHm_Chr4g0426291 RchiOBHm_Chr5g0002501 RchiOBHm_Chr5g0047701 RchiOBHm_Chr5g0057331 RchiOBHm_Chr6g0289621 RchiOBHm_Chr6g0289631
rosa_laevigata	RLG00000014682 RLG00000018045
rosa_multiflora	Rmu_co8182516.1_g000001 Rmu_sc0000335.1_g000004 Rmu_sc0041332.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155570 Rroxscaffold_3G00238240
rosa_rugosa	Rorug04G0219900 Rorug04G0220000 Rorug04G0420300 Rorug04G0420400 Rorug04G0420500 Rorug04G0420600 Rorug05G0111700 Rorug05G0325900 Rorug05G0326000 Rorug06G0152100 Rorug06G0152200 Rorug06G0152300 Rorug07G0231200
rosa_samantha	Rh2AG305300 Rh3AG218400 Rh3BG144900 Rh3BG365600 Rh3CG146200 Rh3DG146000 Rh5AG097100 Rh5DG428000 Rh6AG164100 Rh6AG387400 Rh6BG079000 Rh6BG285500 Rh6BG475400 Rh6CG330000 Rh7AG293100 Rh7CG313100
rosa_wichuraiana	Rw6G033750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	111
AciI	CCGC	1 cut(s)	110
AcsI	RAATTY	1 cut(s)	46
AfaI	GTAC	1 cut(s)	88
AgsI	TTSAA	2 cut(s)	43, 52
AluBI	AGCT	3 cut(s)	18, 25, 55
AluI	AGCT	3 cut(s)	18, 25, 55
ApeKI	GCWGC	1 cut(s)	136
ApoI	RAATTY	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	123
BccI	CCATC	1 cut(s)	86
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BfuAI	ACCTGC	1 cut(s)	111
BisI	GCNGC	2 cut(s)	111, 137
BlsI	GCNGC	2 cut(s)	112, 138
BsaBI	GATNNNNATC	1 cut(s)	173
Bse3DI	GCAATG	1 cut(s)	105
Bse8I	GATNNNNATC	1 cut(s)	173
BseJI	GATNNNNATC	1 cut(s)	173
BseMI	GCAATG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	123
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	1 cut(s)	110
BspMI	ACCTGC	1 cut(s)	111
BsrDI	GCAATG	1 cut(s)	105
BssMI	GATC	1 cut(s)	3
Bst4CI	ACNGT	1 cut(s)	159
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 107
BstV1I	GCAGC	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	155
BveI	ACCTGC	1 cut(s)	111
Csp6I	GTAC	1 cut(s)	87
CviJI	RGCY	4 cut(s)	18, 25, 55, 113
CviKI_1	RGCY	4 cut(s)	18, 25, 55, 113
CviQI	GTAC	1 cut(s)	87
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
FaiI	YATR	1 cut(s)	142
Fnu4HI	GCNGC	2 cut(s)	111, 137
Fsp4HI	GCNGC	2 cut(s)	111, 137
GluI	GCNGC	2 cut(s)	111, 137
Hpy188I	TCNGA	2 cut(s)	10, 209
Hpy188III	TCNNGA	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4V	TGCA	2 cut(s)	120, 155
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 107
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	2 cut(s)	22, 60
LpnPI	CCDG	2 cut(s)	85, 106
Lsp1109I	GCAGC	1 cut(s)	123
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MluCI	AATT	2 cut(s)	46, 115
MnlI	CCTC	2 cut(s)	70, 112
MwoI	GCNNNNNNNGC	2 cut(s)	61, 107
NdeII	GATC	1 cut(s)	3
PkrI	GCNGC	2 cut(s)	112, 138
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
SatI	GCNGC	2 cut(s)	111, 137
Sau3AI	GATC	1 cut(s)	3
SetI	ASST	4 cut(s)	20, 27, 57, 125
SgeI	CNNG	8 cut(s)	25, 31, 46, 55, 64, 71, 84, 133
Sse9I	AATT	2 cut(s)	46, 115
SsiI	CCGC	1 cut(s)	110
TaaI	ACNGT	1 cut(s)	159
TasI	AATT	2 cut(s)	46, 115
TauI	GCSGC	1 cut(s)	113
TscAI	CASTG	1 cut(s)	162
TseI	GCWGC	1 cut(s)	136
TspDTI	ATGAA	2 cut(s)	115, 163
TspRI	CASTG	1 cut(s)	162
XapI	RAATTY	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.