Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001768

Physical Location & Seq

Genomic Coordinates Reverse (-)

26134227 .. 26137102

Gene Structure 2876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG164100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGATCTCTGATGAGAGCTTAGAGCTGATTGCCAAGTCTTTCAAGAATTTCAAGCTCCTTGTGCTTTTGTCTTGTGAGGGATTCAGTACCGATGGCCTTGCCTCCATTGTGGCTAATTGCAGATTAGAGGGCATGCATATCAACTTAATCCTAATGCCCCTAAAGAAAGAGTTGATAAGAGAGTACTATGAGCAAAAATTTGGGCAGGAGTGCAGCTTCTTTTCTTTATATTGCAGTCCACTTCGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000822 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008144 GO:0008150 GO:0008152 GO:0009267 GO:0009555 GO:0009605 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0009991 GO:0010011 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010152 GO:0010311 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016036 GO:0016567 GO:0016740 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031461 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033554 GO:0036094 GO:0036211 GO:0038023 GO:0038198 GO:0042221 GO:0042562 GO:0042594 GO:0043167 GO:0043168 GO:0043170 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045013 GO:0045014 GO:0045892 GO:0045934 GO:0045990 GO:0046015 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060089 GO:0060255 GO:0061458 GO:0061984 GO:0061985 GO:0061986 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

83

Amino Acids

9.52

Weight (kDa)

5.75

Isoelectric Point (pI)

45.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001768)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501101 RchiOBHm_Chr1g0337861 RchiOBHm_Chr3g0465841 RchiOBHm_Chr3g0478461 RchiOBHm_Chr4g0403301 RchiOBHm_Chr4g0426291 RchiOBHm_Chr5g0002501 RchiOBHm_Chr5g0047701 RchiOBHm_Chr5g0057331 RchiOBHm_Chr6g0289621 RchiOBHm_Chr6g0289631
rosa_laevigata	RLG00000014682 RLG00000018045
rosa_multiflora	Rmu_co8182516.1_g000001 Rmu_sc0000335.1_g000004 Rmu_sc0041332.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155570 Rroxscaffold_3G00238240
rosa_rugosa	Rorug04G0219900 Rorug04G0220000 Rorug04G0420300 Rorug04G0420400 Rorug04G0420500 Rorug04G0420600 Rorug05G0111700 Rorug05G0325900 Rorug05G0326000 Rorug06G0152100 Rorug06G0152200 Rorug06G0152300 Rorug07G0231200
rosa_samantha	Rh2AG305300 Rh3AG218400 Rh3BG144900 Rh3BG365600 Rh3CG146200 Rh3DG146000 Rh5AG097100 Rh5DG428000 Rh6AG164100 Rh6AG387400 Rh6BG079000 Rh6BG285500 Rh6BG475400 Rh6CG330000 Rh7AG293100 Rh7CG313100
rosa_wichuraiana	Rw6G033750

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	46, 197
AfaI	GTAC	2 cut(s)	88, 185
AgsI	TTSAA	2 cut(s)	43, 52
AluBI	AGCT	4 cut(s)	18, 25, 55, 216
AluI	AGCT	4 cut(s)	18, 25, 55, 216
AoxI	GGCC	1 cut(s)	94
ApeKI	GCWGC	1 cut(s)	213
ApoI	RAATTY	2 cut(s)	46, 197
AsuII	TTCGAA	1 cut(s)	244
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	1 cut(s)	86
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BisI	GCNGC	1 cut(s)	214
BlsI	GCNGC	1 cut(s)	215
BmcAI	AGTACT	1 cut(s)	185
Bpu14I	TTCGAA	1 cut(s)	244
BseXI	GCAGC	1 cut(s)	225
BsgI	GTGCAG	1 cut(s)	232
BshFI	GGCC	1 cut(s)	96
BsnI	GGCC	1 cut(s)	96
Bsp119I	TTCGAA	1 cut(s)	244
Bsp143I	GATC	1 cut(s)	3
BspANI	GGCC	1 cut(s)	96
BspT104I	TTCGAA	1 cut(s)	244
BssMI	GATC	1 cut(s)	3
BstBI	TTCGAA	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	1 cut(s)	19
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	1 cut(s)	61
BstNSI	RCATGY	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	134
Csp6I	GTAC	2 cut(s)	87, 184
CviAII	CATG	2 cut(s)	133, 249
CviJI	RGCY	6 cut(s)	18, 25, 55, 96, 113, 216
CviKI_1	RGCY	6 cut(s)	18, 25, 55, 96, 113, 216
CviQI	GTAC	2 cut(s)	87, 184
DdeI	CTNAG	1 cut(s)	19
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
EcoT22I	ATGCAT	1 cut(s)	138
FaeI	CATG	2 cut(s)	136, 252
FaiI	YATR	5 cut(s)	134, 138, 189, 229, 250
FatI	CATG	2 cut(s)	132, 248
Fnu4HI	GCNGC	1 cut(s)	214
Fsp4HI	GCNGC	1 cut(s)	214
GluI	GCNGC	1 cut(s)	214
HaeIII	GGCC	1 cut(s)	96
Hin1II	CATG	2 cut(s)	136, 252
HinfI	GANTC	1 cut(s)	81
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	1 cut(s)	43
Hpy8I	GTNNAC	1 cut(s)	239
HpyCH4V	TGCA	4 cut(s)	120, 136, 213, 234
HpyF10VI	GCNNNNNNNGC	1 cut(s)	61
HpyF3I	CTNAG	1 cut(s)	19
Hsp92II	CATG	2 cut(s)	136, 252
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	60
LpnPI	CCDG	1 cut(s)	191
Lsp1109I	GCAGC	1 cut(s)	225
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MluCI	AATT	3 cut(s)	46, 115, 197
MnlI	CCTC	3 cut(s)	70, 112, 121
Mph1103I	ATGCAT	1 cut(s)	138
MseI	TTAA	1 cut(s)	146
MwoI	GCNNNNNNNGC	1 cut(s)	61
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	2 cut(s)	136, 252
NsiI	ATGCAT	1 cut(s)	138
NspI	RCATGY	1 cut(s)	136
NspV	TTCGAA	1 cut(s)	244
PaeI	GCATGC	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	81
PkrI	GCNGC	1 cut(s)	215
RsaI	GTAC	2 cut(s)	88, 185
RsaNI	GTAC	2 cut(s)	87, 184
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	1 cut(s)	214
Sau3AI	GATC	1 cut(s)	3
ScaI	AGTACT	1 cut(s)	185
SetI	ASST	4 cut(s)	20, 27, 57, 218
SfuI	TTCGAA	1 cut(s)	244
SgeI	CNNG	8 cut(s)	46, 55, 64, 71, 84, 110, 145, 218
SphI	GCATGC	1 cut(s)	136
Sse9I	AATT	3 cut(s)	46, 115, 197
TaqI	TCGA	1 cut(s)	244
TasI	AATT	3 cut(s)	46, 115, 197
TatI	WGTACW	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	81
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TseI	GCWGC	1 cut(s)	213
XapI	RAATTY	2 cut(s)	46, 197
XceI	RCATGY	1 cut(s)	136
ZrmI	AGTACT	1 cut(s)	185
Zsp2I	ATGCAT	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.