RchiOBHm_Chr5g0047701

Protein TRANSPORT INHIBITOR RESPONSE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001768
Physical Location & Seq
Forward (+)
44241873 .. 44242150
278 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32558

Sequence Viewer

Length: 189 bp
ATGATCTCTGACAAGATCTTGGAGCTGATTGCCAAGTCTTTCAAGAATTTCGAGCTCCTTGTGCTTTCGTCCTGTGAGGGATTCAGTACCGATAGCCTTGCCTCCATTGCAGCTAATTGCAGGTTCATCTCTTTGTTGCTATGGTTATCTATTGCACTGTTTGCTAGAGTTTTGGGATTTAACTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0000822 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008144 GO:0008150 GO:0008152 GO:0009267 GO:0009555 GO:0009605 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0009991 GO:0010011 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010152 GO:0010311 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016036 GO:0016567 GO:0016740 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031461 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033554 GO:0036094 GO:0036211 GO:0038023 GO:0038198 GO:0042221 GO:0042562 GO:0042594 GO:0043167 GO:0043168 GO:0043170 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045013 GO:0045014 GO:0045892 GO:0045934 GO:0045990 GO:0046015 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060089 GO:0060255 GO:0061458 GO:0061984 GO:0061985 GO:0061986 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1990234 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

62

Amino Acids

6.91

Weight (kDa)

6.03

Isoelectric Point (pI)

22.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 111
AcsI RAATTY 1 cut(s) 46
AfaI GTAC 1 cut(s) 88
AgsI TTSAA 1 cut(s) 43
AluBI AGCT 3 cut(s) 25, 55, 113
AluI AGCT 3 cut(s) 25, 55, 113
Alw21I GWGCWC 1 cut(s) 57
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 46
BanII GRGCYC 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 122
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BfaI CTAG 1 cut(s) 165
BfuAI ACCTGC 1 cut(s) 111
BglII AGATCT 1 cut(s) 15
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bse3DI GCAATG 1 cut(s) 105
BseMI GCAATG 1 cut(s) 105
BseXI GCAGC 1 cut(s) 122
BsiHKAI GWGCWC 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 2 cut(s) 3, 15
BspMI ACCTGC 1 cut(s) 111
BsrDI GCAATG 1 cut(s) 105
BssMI GATC 2 cut(s) 3, 15
Bst4CI ACNGT 1 cut(s) 159
BstAPI GCANNNNNTGC 1 cut(s) 161
BstKTI GATC 2 cut(s) 6, 18
BstMBI GATC 2 cut(s) 3, 15
BstMWI GCNNNNNNNGC 3 cut(s) 61, 107, 161
BstV1I GCAGC 1 cut(s) 122
BstX2I RGATCY 1 cut(s) 15
BstYI RGATCY 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 155
BveI ACCTGC 1 cut(s) 111
Csp6I GTAC 1 cut(s) 87
CviJI RGCY 4 cut(s) 25, 55, 96, 113
CviKI_1 RGCY 4 cut(s) 25, 55, 96, 113
CviQI GTAC 1 cut(s) 87
DpnI GATC 2 cut(s) 5, 17
DpnII GATC 2 cut(s) 3, 15
Ecl136II GAGCTC 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 55
EcoICRI GAGCTC 1 cut(s) 55
EcoT38I GRGCYC 1 cut(s) 57
FaiI YATR 1 cut(s) 142
Fnu4HI GCNGC 1 cut(s) 111
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 1 cut(s) 165
GluI GCNGC 1 cut(s) 111
HinfI GANTC 1 cut(s) 81
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 1 cut(s) 43
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4V TGCA 3 cut(s) 110, 120, 155
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 107, 161
Kzo9I GATC 2 cut(s) 3, 15
LmnI GCTCC 2 cut(s) 22, 60
LpnPI CCDG 2 cut(s) 85, 106
Lsp1109I GCAGC 1 cut(s) 122
MaeI CTAG 1 cut(s) 165
MalI GATC 2 cut(s) 5, 17
MboI GATC 2 cut(s) 3, 15
MflI RGATCY 1 cut(s) 15
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 2 cut(s) 46, 115
MnlI CCTC 2 cut(s) 70, 112
MseI TTAA 1 cut(s) 180
MwoI GCNNNNNNNGC 3 cut(s) 61, 107, 161
NdeII GATC 2 cut(s) 3, 15
PfeI GAWTC 1 cut(s) 81
PkrI GCNGC 1 cut(s) 112
Psp124BI GAGCTC 1 cut(s) 57
PsuI RGATCY 1 cut(s) 15
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
SacI GAGCTC 1 cut(s) 57
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 2 cut(s) 3, 15
SduI GDGCHC 1 cut(s) 57
SetI ASST 4 cut(s) 27, 57, 115, 125
Sse9I AATT 2 cut(s) 46, 115
SspMI CTAG 1 cut(s) 165
SstI GAGCTC 1 cut(s) 57
TaaI ACNGT 1 cut(s) 159
TaqI TCGA 1 cut(s) 51
TasI AATT 2 cut(s) 46, 115
TfiI GAWTC 1 cut(s) 81
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 1 cut(s) 162
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 115
TspRI CASTG 1 cut(s) 162
XapI RAATTY 1 cut(s) 46
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.