Rmu_sc0041332.1_g000001

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0041332.1
OG0001768
Physical Location & Seq
Forward (+)
1 .. 1529
1529 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0041332.1_g000001.1.cds

Sequence Viewer

Length: 633 bp
atctgcactctctctcagagcttcgccaatcgggtcggtccatcccttcgaagccccgatccaggcgccatggccgccgctgccaatgcccccatgaccatgaaagagcagctcacgctgcctagtattgggattaatccccaattcattacgtttacgcatgtgactatggaatcggataagtacatttgcgttagggagacctcgccgcagaatagcatcgtgatcgttgacatgaacatgccaatgcagccgttgcgacggccgattactgctgattccgctttgatgaatcctaattcgaggattctggctcttaaagctcaagtgcaaggaactactcaggatcatttacagatatttaacattgaactgaaaacgaagatgaaatcacatcagatgcctgagcagatcgtgttttggaagtgggtcactcctaagatgctggggatggtcacacagacctcagtataccactggttaattgacggggagtctgagccaacaaaggtgtttgagcgtacagctaatttagcaaataatcaaattatcaactaccgttgtgatccctctgaaaagtggttggtcttaattggaattgctcctggttctcctgaggttagtgtttcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100
Pfam Domains
Protein Families
Clathrin Clathrin-link Clathrin_H_link Clathrin_propel

Protein Analysis

210

Amino Acids

23.44

Weight (kDa)

7.91

Isoelectric Point (pI)

51.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 65
AccI GTMKAC 1 cut(s) 471
AciI CCGC 4 cut(s) 75, 78, 209, 282
AclWI GGATC 3 cut(s) 53, 354, 560
AcoI YGGCCR 2 cut(s) 72, 263
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 2 cut(s) 185, 523
AfiI CCNNNNNNNGG 2 cut(s) 62, 128
AgsI TTSAA 1 cut(s) 371
AhdI GACNNNNNGTC 1 cut(s) 493
AjnI CCWGG 2 cut(s) 61, 604
AluBI AGCT 4 cut(s) 21, 112, 323, 527
AluI AGCT 4 cut(s) 21, 112, 323, 527
Alw26I GTCTC 1 cut(s) 194
AlwI GGATC 3 cut(s) 53, 354, 560
AoxI GGCC 2 cut(s) 72, 263
ApeKI GCWGC 4 cut(s) 80, 109, 118, 250
AseI ATTAAT 1 cut(s) 135
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 38
AsuII TTCGAA 1 cut(s) 49
AvaII GGWCC 1 cut(s) 38
AxyI CCTNAGG 1 cut(s) 615
BanI GGYRCC 1 cut(s) 65
BbvI GCAGC 4 cut(s) 67, 105, 121, 262
BccI CCATC 2 cut(s) 49, 445
BceAI ACGGC 2 cut(s) 238, 278
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BciT130I CCWGG 2 cut(s) 63, 606
BcoDI GTCTC 1 cut(s) 194
BfaI CTAG 1 cut(s) 123
BfoI RGCGCY 1 cut(s) 69
BisI GCNGC 7 cut(s) 75, 78, 81, 110, 119, 209, 251
BlsI GCNGC 7 cut(s) 76, 79, 82, 111, 120, 210, 252
Bme1390I CCNGG 2 cut(s) 63, 606
Bme18I GGWCC 1 cut(s) 38
BmeRI GACNNNNNGTC 1 cut(s) 493
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 2 cut(s) 63, 606
BmsI GCATC 3 cut(s) 228, 390, 432
Bpu10I CCTNAGC 1 cut(s) 405
Bpu14I TTCGAA 1 cut(s) 49
BpuEI CTTGAG 1 cut(s) 309
BsaHI GRCGYC 1 cut(s) 66
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 69
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 128
Bse1I ACTGG 1 cut(s) 482
Bse21I CCTNAGG 1 cut(s) 615
BseBI CCWGG 2 cut(s) 63, 606
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 2 cut(s) 41, 456
BseLI CCNNNNNNNGG 2 cut(s) 62, 128
BseMII CTCAG 6 cut(s) 29, 356, 396, 480, 489, 606
BseNI ACTGG 1 cut(s) 482
BseX3I CGGCCG 1 cut(s) 263
BseXI GCAGC 4 cut(s) 67, 105, 121, 262
BseYI CCCAGC 1 cut(s) 445
Bsh1285I CGRYCG 1 cut(s) 266
BshFI GGCC 2 cut(s) 74, 265
BshNI GGYRCC 1 cut(s) 65
BsiEI CGRYCG 1 cut(s) 266
BslI CCNNNNNNNGG 2 cut(s) 62, 128
BsmAI GTCTC 1 cut(s) 194
BsnI GGCC 2 cut(s) 74, 265
Bso31I GGTCTC 1 cut(s) 194
Bsp119I TTCGAA 1 cut(s) 49
Bsp143I GATC 5 cut(s) 58, 225, 346, 411, 565
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 4 cut(s) 75, 78, 209, 282
BspANI GGCC 2 cut(s) 74, 265
BspCNI CTCAG 6 cut(s) 28, 355, 397, 479, 490, 607
BspLI GGNNCC 1 cut(s) 67
BspPI GGATC 3 cut(s) 53, 354, 560
BspT104I TTCGAA 1 cut(s) 49
BspT107I GGYRCC 1 cut(s) 65
BspTNI GGTCTC 1 cut(s) 194
BsrI ACTGG 1 cut(s) 482
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 5 cut(s) 58, 225, 346, 411, 565
BssNAI GTATAC 1 cut(s) 472
BssNI GRCGYC 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 69
Bst1107I GTATAC 1 cut(s) 472
Bst2UI CCWGG 2 cut(s) 63, 606
Bst4CI ACNGT 1 cut(s) 560
BstACI GRCGYC 1 cut(s) 66
BstAPI GCANNNNNTGC 1 cut(s) 256
BstBI TTCGAA 1 cut(s) 49
BstDEI CTNAG 7 cut(s) 15, 342, 405, 438, 466, 498, 615
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 2 cut(s) 41, 456
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 5 cut(s) 61, 228, 349, 414, 568
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 5 cut(s) 58, 225, 346, 411, 565
BstMCI CGRYCG 1 cut(s) 266
BstNI CCWGG 2 cut(s) 63, 606
BstNSI RCATGY 2 cut(s) 164, 244
BstSCI CCNGG 2 cut(s) 61, 604
BstV1I GCAGC 4 cut(s) 67, 105, 121, 262
BstZ17I GTATAC 1 cut(s) 472
BstZI CGGCCG 1 cut(s) 263
Bsu36I CCTNAGG 1 cut(s) 615
BsuRI GGCC 2 cut(s) 74, 265
BtgI CCRYGG 1 cut(s) 69
BtsCI GGATG 2 cut(s) 41, 456
BtsIMutI CAGTG 1 cut(s) 475
CfoI GCGC 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 38
Csp6I GTAC 2 cut(s) 184, 522
CviAII CATG 6 cut(s) 70, 94, 100, 161, 235, 241
CviQI GTAC 2 cut(s) 184, 522
DdeI CTNAG 7 cut(s) 15, 342, 405, 438, 466, 498, 615
DinI GGCGCC 1 cut(s) 67
DpnI GATC 5 cut(s) 60, 227, 348, 413, 567
DpnII GATC 5 cut(s) 58, 225, 346, 411, 565
DriI GACNNNNNGTC 1 cut(s) 493
EaeI YGGCCR 2 cut(s) 72, 263
EagI CGGCCG 1 cut(s) 263
Eam1105I GACNNNNNGTC 1 cut(s) 493
EclXI CGGCCG 1 cut(s) 263
Eco130I CCWWGG 1 cut(s) 69
Eco31I GGTCTC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 38
Eco52I CGGCCG 1 cut(s) 263
Eco81I CCTNAGG 1 cut(s) 615
EcoRII CCWGG 2 cut(s) 61, 604
EcoT14I CCWWGG 1 cut(s) 69
EgeI GGCGCC 1 cut(s) 67
EheI GGCGCC 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 6 cut(s) 73, 97, 103, 164, 238, 244
FaiI YATR 9 cut(s) 71, 95, 101, 162, 170, 236, 242, 472, 631
FatI CATG 6 cut(s) 69, 93, 99, 160, 234, 240
FblI GTMKAC 1 cut(s) 471
Fnu4HI GCNGC 7 cut(s) 75, 78, 81, 110, 119, 209, 251
FokI GGATG 2 cut(s) 28, 463
Fsp4HI GCNGC 7 cut(s) 75, 78, 81, 110, 119, 209, 251
FspBI CTAG 1 cut(s) 123
GlaI GCGC 1 cut(s) 67
GluI GCNGC 7 cut(s) 75, 78, 81, 110, 119, 209, 251
GsaI CCCAGC 1 cut(s) 449
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 2 cut(s) 74, 265
HhaI GCGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 6 cut(s) 73, 97, 103, 164, 238, 244
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 5 cut(s) 173, 278, 292, 307, 494
Hpy166II GTNNAC 3 cut(s) 156, 232, 472
Hpy188I TCNGA 5 cut(s) 18, 178, 399, 499, 574
Hpy188III TCNNGA 3 cut(s) 223, 344, 614
Hpy8I GTNNAC 3 cut(s) 156, 232, 472
Hpy99I CGWCG 1 cut(s) 264
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 1 cut(s) 560
HpyCH4IV ACGT 1 cut(s) 152
HpyCH4V TGCA 3 cut(s) 6, 250, 331
HpyF3I CTNAG 7 cut(s) 15, 342, 405, 438, 466, 498, 615
HpySE526I ACGT 1 cut(s) 152
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 6 cut(s) 73, 97, 103, 164, 238, 244
HspAI GCGC 1 cut(s) 66
KasI GGCGCC 1 cut(s) 65
Kzo9I GATC 5 cut(s) 58, 225, 346, 411, 565
LmnI GCTCC 1 cut(s) 607
Lsp1109I GCAGC 4 cut(s) 67, 105, 121, 262
LweI GCATC 3 cut(s) 228, 390, 432
MaeI CTAG 1 cut(s) 123
MaeII ACGT 1 cut(s) 152
MaeIII GTNAC 3 cut(s) 163, 430, 454
MalI GATC 5 cut(s) 60, 227, 348, 413, 567
MboI GATC 5 cut(s) 58, 225, 346, 411, 565
MboII GAAGA 1 cut(s) 394
MluCI AATT 7 cut(s) 143, 298, 483, 529, 546, 591, 597
Mly113I GGCGCC 1 cut(s) 66
MlyI GAGTC 1 cut(s) 503
MnlI CCTC 5 cut(s) 214, 297, 475, 580, 610
MseI TTAA 5 cut(s) 135, 318, 363, 482, 590
MslI CAYNNNNRTG 3 cut(s) 98, 239, 245
MspA1I CMGCKG 1 cut(s) 80
MspR9I CCNGG 2 cut(s) 63, 606
MvaI CCWGG 2 cut(s) 63, 606
NarI GGCGCC 1 cut(s) 66
NcoI CCATGG 1 cut(s) 69
NdeII GATC 5 cut(s) 58, 225, 346, 411, 565
NlaIII CATG 6 cut(s) 73, 97, 103, 164, 238, 244
NlaIV GGNNCC 1 cut(s) 67
NmuCI GTSAC 3 cut(s) 163, 430, 454
NspI RCATGY 2 cut(s) 164, 244
NspV TTCGAA 1 cut(s) 49
PfeI GAWTC 4 cut(s) 173, 278, 292, 307
PkrI GCNGC 7 cut(s) 76, 79, 82, 111, 120, 210, 252
PleI GAGTC 1 cut(s) 502
PluTI GGCGCC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 502
PshBI ATTAAT 1 cut(s) 135
Psp6I CCWGG 2 cut(s) 61, 604
PspFI CCCAGC 1 cut(s) 445
PspGI CCWGG 2 cut(s) 61, 604
PspN4I GGNNCC 1 cut(s) 67
PspPI GGNCC 1 cut(s) 38
RsaI GTAC 2 cut(s) 185, 523
RsaNI GTAC 2 cut(s) 184, 522
RseI CAYNNNNRTG 3 cut(s) 98, 239, 245
SaqAI TTAA 5 cut(s) 135, 318, 363, 482, 590
SatI GCNGC 7 cut(s) 75, 78, 81, 110, 119, 209, 251
Sau3AI GATC 5 cut(s) 58, 225, 346, 411, 565
Sau96I GGNCC 1 cut(s) 38
SchI GAGTC 1 cut(s) 503
ScrFI CCNGG 2 cut(s) 63, 606
SetI ASST 9 cut(s) 23, 114, 155, 206, 325, 467, 513, 529, 621
SfaNI GCATC 3 cut(s) 228, 390, 432
SfoI GGCGCC 1 cut(s) 67
SfuI TTCGAA 1 cut(s) 49
SinI GGWCC 1 cut(s) 38
SmiMI CAYNNNNRTG 3 cut(s) 98, 239, 245
SmlI CTYRAG 1 cut(s) 324
SmoI CTYRAG 1 cut(s) 324
Sse9I AATT 7 cut(s) 143, 298, 483, 529, 546, 591, 597
SsiI CCGC 4 cut(s) 75, 78, 209, 282
SspDI GGCGCC 1 cut(s) 65
SspMI CTAG 1 cut(s) 123
StyD4I CCNGG 2 cut(s) 61, 604
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 560
TaiI ACGT 1 cut(s) 155
TaqI TCGA 2 cut(s) 49, 302
TaqII GACCGA 1 cut(s) 26
TasI AATT 7 cut(s) 143, 298, 483, 529, 546, 591, 597
TatI WGTACW 1 cut(s) 183
TauI GCSGC 3 cut(s) 77, 80, 211
TfiI GAWTC 4 cut(s) 173, 278, 292, 307
Tru1I TTAA 5 cut(s) 135, 318, 363, 482, 590
Tru9I TTAA 5 cut(s) 135, 318, 363, 482, 590
TscAI CASTG 1 cut(s) 482
TseFI GTSAC 3 cut(s) 163, 430, 454
TseI GCWGC 4 cut(s) 80, 109, 118, 250
Tsp45I GTSAC 3 cut(s) 163, 430, 454
TspDTI ATGAA 6 cut(s) 116, 136, 251, 305, 401, 618
TspRI CASTG 1 cut(s) 482
VpaK11BI GGWCC 1 cut(s) 38
VspI ATTAAT 1 cut(s) 135
XceI RCATGY 2 cut(s) 164, 244
XmiI GTMKAC 1 cut(s) 471
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.