Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001768

Physical Location & Seq

Genomic Coordinates Reverse (-)

21833035 .. 21833707

Gene Structure 673 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0152300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGACCAAGAAACGTTAAGTGAGAAGAGGAGGTTTGGTTTCTTGCCACCATTCTCTGGGCCGCCACTTCGTCGTCACTGCCAACCCGGCCGTGACCTCCTCGGCGACAACATTTTCAACACCGAAGGTGACAATTGGAAATCCCAGCGGCAGCTTTCCAGCCACGAATTCAACACAAAGTCGCTTAGGAAATTCGTGGAAGAGGTGGTGGACATTGAGCTATACGATCAGATGATCCCTATTCTATCCAAATCTTCCAGCGATCGAACCGTTCTCGATTTCCAAGACATTTTCCTGCAGTTCGCCTTCGACAACATTTGCCAGGTAGGGTTCGGGTATGACTCAGAGTATCTCCTTCCTTCTTTGCCTCAAGCTAAATTCGCGATGGCGTTCGACTATGCGGTCCAGATGAGTTGCGACAGGTTCAGTTCCATGCGCTCGATGTGGAAGATCAAGCGGTCTTTCAGAATTGGGTCGGAAAGCCATCTTCGCGGTGTGGTCTCCAAAGTCCGAGAGTTTGCGAACACCATCGTCAGGCAAAAGAAACGCGAACTAGACGAGAAGAAGACTCTAGATCTCACGACCTGCTGTCTCGGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005798 GO:0005829 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0008150 GO:0012505 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coatomer_E

Protein Analysis

200

Amino Acids

23.22

Weight (kDa)

8.26

Isoelectric Point (pI)

65.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	34 - 198	1.5e-12	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001768)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501101 RchiOBHm_Chr1g0337861 RchiOBHm_Chr3g0465841 RchiOBHm_Chr3g0478461 RchiOBHm_Chr4g0403301 RchiOBHm_Chr4g0426291 RchiOBHm_Chr5g0002501 RchiOBHm_Chr5g0047701 RchiOBHm_Chr5g0057331 RchiOBHm_Chr6g0289621 RchiOBHm_Chr6g0289631
rosa_laevigata	RLG00000014682 RLG00000018045
rosa_multiflora	Rmu_co8182516.1_g000001 Rmu_sc0000335.1_g000004 Rmu_sc0041332.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155570 Rroxscaffold_3G00238240
rosa_rugosa	Rorug04G0219900 Rorug04G0220000 Rorug04G0420300 Rorug04G0420400 Rorug04G0420500 Rorug04G0420600 Rorug05G0111700 Rorug05G0325900 Rorug05G0326000 Rorug06G0152100 Rorug06G0152200 Rorug06G0152300 Rorug07G0231200
rosa_samantha	Rh2AG305300 Rh3AG218400 Rh3BG144900 Rh3BG365600 Rh3CG146200 Rh3DG146000 Rh5AG097100 Rh5DG428000 Rh6AG164100 Rh6AG387400 Rh6BG079000 Rh6BG285500 Rh6BG475400 Rh6CG330000 Rh7AG293100 Rh7CG313100
rosa_wichuraiana	Rw6G033750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	401
Acc36I	ACCTGC	1 cut(s)	593
AccB7I	CCANNNNNTGG	1 cut(s)	56
AccII	CGCG	3 cut(s)	383, 492, 549
AciI	CCGC	5 cut(s)	62, 148, 401, 457, 492
AclI	AACGTT	1 cut(s)	14
AclWI	GGATC	1 cut(s)	229
AcoI	YGGCCR	1 cut(s)	88
AcsI	RAATTY	3 cut(s)	167, 191, 377
AfiI	CCNNNNNNNGG	2 cut(s)	56, 534
AgsI	TTSAA	2 cut(s)	118, 172
AhdI	GACNNNNNGTC	1 cut(s)	588
AjnI	CCWGG	1 cut(s)	321
AluBI	AGCT	3 cut(s)	154, 220, 374
AluI	AGCT	3 cut(s)	154, 220, 374
Alw26I	GTCTC	2 cut(s)	505, 596
AlwI	GGATC	1 cut(s)	229
AoxI	GGCC	2 cut(s)	59, 88
ApeKI	GCWGC	1 cut(s)	151
ApoI	RAATTY	3 cut(s)	167, 191, 377
AspLEI	GCGC	1 cut(s)	438
AspS9I	GGNCC	3 cut(s)	4, 59, 403
AsuC2I	CCSGG	1 cut(s)	87
AsuHPI	GGTGA	1 cut(s)	140
AvaII	GGWCC	2 cut(s)	4, 403
BbsI	GAAGAC	1 cut(s)	572
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	3 cut(s)	379, 492, 536
BceAI	ACGGC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	323
BcnI	CCSGG	1 cut(s)	87
BcoDI	GTCTC	2 cut(s)	505, 596
BfaI	CTAG	2 cut(s)	554, 572
BfmI	CTRYAG	1 cut(s)	296
BfuAI	ACCTGC	1 cut(s)	593
BglI	GCCNNNNNGGC	1 cut(s)	87
BglII	AGATCT	1 cut(s)	574
BisI	GCNGC	3 cut(s)	62, 149, 152
BlsI	GCNGC	3 cut(s)	63, 150, 153
Bme1390I	CCNGG	2 cut(s)	87, 323
Bme18I	GGWCC	2 cut(s)	4, 403
BmeRI	GACNNNNNGTC	1 cut(s)	588
BmgT120I	GGNCC	3 cut(s)	4, 59, 403
BmrFI	CCNGG	2 cut(s)	87, 323
BpiI	GAAGAC	1 cut(s)	572
Bpu10I	CCTNAGC	1 cut(s)	185
BpuEI	CTTGAG	1 cut(s)	354
BpuMI	CCSGG	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	505
BsaJI	CCNNGG	1 cut(s)	100
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 534
BseBI	CCWGG	1 cut(s)	323
BseDI	CCNNGG	1 cut(s)	100
BseLI	CCNNNNNNNGG	2 cut(s)	56, 534
BseMII	CTCAG	1 cut(s)	357
BseRI	GAGGAG	2 cut(s)	43, 89
BseX3I	CGGCCG	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	163
BseYI	CCCAGC	1 cut(s)	144
Bsh1236I	CGCG	3 cut(s)	383, 492, 549
Bsh1285I	CGRYCG	2 cut(s)	91, 265
BshFI	GGCC	2 cut(s)	61, 90
BsiEI	CGRYCG	2 cut(s)	91, 265
BsiSI	CCGG	1 cut(s)	87
BslI	CCNNNNNNNGG	2 cut(s)	56, 534
BsmAI	GTCTC	2 cut(s)	505, 596
BsnI	GGCC	2 cut(s)	61, 90
Bso31I	GGTCTC	1 cut(s)	505
Bsp143I	GATC	5 cut(s)	226, 234, 262, 450, 574
Bsp68I	TCGCGA	1 cut(s)	383
BspACI	CCGC	5 cut(s)	62, 148, 401, 457, 492
BspANI	GGCC	2 cut(s)	61, 90
BspCNI	CTCAG	1 cut(s)	356
BspFNI	CGCG	3 cut(s)	383, 492, 549
BspMAI	CTGCAG	1 cut(s)	300
BspMI	ACCTGC	1 cut(s)	593
BspPI	GGATC	1 cut(s)	229
BspTNI	GGTCTC	1 cut(s)	505
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	5 cut(s)	226, 234, 262, 450, 574
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	2 cut(s)	20, 195
BstDEI	CTNAG	2 cut(s)	185, 343
BstFNI	CGCG	3 cut(s)	383, 492, 549
BstHHI	GCGC	1 cut(s)	438
BstKTI	GATC	5 cut(s)	229, 237, 265, 453, 577
BstMAI	GTCTC	2 cut(s)	505, 596
BstMBI	GATC	5 cut(s)	226, 234, 262, 450, 574
BstMCI	CGRYCG	2 cut(s)	91, 265
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 380, 489
BstNI	CCWGG	1 cut(s)	323
BstSCI	CCNGG	2 cut(s)	85, 321
BstSFI	CTRYAG	1 cut(s)	296
BstUI	CGCG	3 cut(s)	383, 492, 549
BstV1I	GCAGC	1 cut(s)	163
BstV2I	GAAGAC	1 cut(s)	572
BstX2I	RGATCY	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	574
BstZI	CGGCCG	1 cut(s)	88
BsuRI	GGCC	2 cut(s)	61, 90
BtgZI	GCGATG	1 cut(s)	398
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	76
BtuMI	TCGCGA	1 cut(s)	383
BveI	ACCTGC	1 cut(s)	593
CfoI	GCGC	1 cut(s)	438
Cfr13I	GGNCC	3 cut(s)	4, 59, 403
CviAII	CATG	1 cut(s)	433
CviJI	RGCY	7 cut(s)	61, 90, 154, 162, 220, 374, 483
CviKI_1	RGCY	7 cut(s)	61, 90, 154, 162, 220, 374, 483
DdeI	CTNAG	2 cut(s)	185, 343
DpnI	GATC	5 cut(s)	228, 236, 264, 452, 576
DpnII	GATC	5 cut(s)	226, 234, 262, 450, 574
DrdI	GACNNNNNNGTC	1 cut(s)	401
DriI	GACNNNNNGTC	1 cut(s)	588
DseDI	GACNNNNNNGTC	1 cut(s)	401
EaeI	YGGCCR	1 cut(s)	88
EagI	CGGCCG	1 cut(s)	88
Eam1104I	CTCTTC	2 cut(s)	20, 195
Eam1105I	GACNNNNNGTC	1 cut(s)	588
EarI	CTCTTC	2 cut(s)	20, 195
EclXI	CGGCCG	1 cut(s)	88
Eco31I	GGTCTC	1 cut(s)	505
Eco47I	GGWCC	2 cut(s)	4, 403
Eco52I	CGGCCG	1 cut(s)	88
EcoRI	GAATTC	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	321
FaeI	CATG	1 cut(s)	436
FaiI	YATR	4 cut(s)	223, 339, 399, 434
FatI	CATG	1 cut(s)	432
Fnu4HI	GCNGC	3 cut(s)	62, 149, 152
Fsp4HI	GCNGC	3 cut(s)	62, 149, 152
FspBI	CTAG	2 cut(s)	554, 572
GlaI	GCGC	1 cut(s)	437
GluI	GCNGC	3 cut(s)	62, 149, 152
GsaI	CCCAGC	1 cut(s)	148
HaeIII	GGCC	2 cut(s)	61, 90
HapII	CCGG	1 cut(s)	87
HhaI	GCGC	1 cut(s)	438
Hin1II	CATG	1 cut(s)	436
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HinfI	GANTC	2 cut(s)	341, 568
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	5 cut(s)	231, 346, 467, 478, 512
Hpy188III	TCNNGA	6 cut(s)	275, 382, 406, 572, 580, 600
Hpy8I	GTNNAC	1 cut(s)	211
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	4 cut(s)	119, 316, 365, 369
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	1 cut(s)	298
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 380, 489
HpyF3I	CTNAG	2 cut(s)	185, 343
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	1 cut(s)	436
HspAI	GCGC	1 cut(s)	436
Kzo9I	GATC	5 cut(s)	226, 234, 262, 450, 574
Lsp1109I	GCAGC	1 cut(s)	163
MaeI	CTAG	2 cut(s)	554, 572
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	3 cut(s)	74, 92, 128
MalI	GATC	5 cut(s)	228, 236, 264, 452, 576
MboI	GATC	5 cut(s)	226, 234, 262, 450, 574
MboII	GAAGA	7 cut(s)	37, 212, 246, 460, 479, 574, 577
MfeI	CAATTG	1 cut(s)	133
MflI	RGATCY	1 cut(s)	574
MluCI	AATT	5 cut(s)	133, 167, 191, 377, 468
MlyI	GAGTC	2 cut(s)	335, 562
MmeI	TCCRAC	1 cut(s)	456
MnlI	CCTC	6 cut(s)	21, 24, 107, 110, 196, 378
MseI	TTAA	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	148
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	2 cut(s)	87, 323
MunI	CAATTG	1 cut(s)	133
MvaI	CCWGG	1 cut(s)	323
MvnI	CGCG	3 cut(s)	383, 492, 549
MwoI	GCNNNNNNNGC	3 cut(s)	87, 380, 489
NciI	CCSGG	1 cut(s)	87
NdeII	GATC	5 cut(s)	226, 234, 262, 450, 574
NlaIII	CATG	1 cut(s)	436
NmeAIII	GCCGAG	1 cut(s)	81
NmuCI	GTSAC	3 cut(s)	74, 92, 128
NruI	TCGCGA	1 cut(s)	383
PflMI	CCANNNNNTGG	1 cut(s)	56
PkrI	GCNGC	3 cut(s)	63, 150, 153
Ple19I	CGATCG	1 cut(s)	265
PleI	GAGTC	2 cut(s)	335, 562
PpsI	GAGTC	2 cut(s)	335, 562
Psp1406I	AACGTT	1 cut(s)	14
Psp6I	CCWGG	1 cut(s)	321
PspFI	CCCAGC	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	321
PspPI	GGNCC	3 cut(s)	4, 59, 403
PstI	CTGCAG	1 cut(s)	300
PsuI	RGATCY	1 cut(s)	574
PvuI	CGATCG	1 cut(s)	265
RruI	TCGCGA	1 cut(s)	383
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	3 cut(s)	62, 149, 152
Sau3AI	GATC	5 cut(s)	226, 234, 262, 450, 574
Sau96I	GGNCC	3 cut(s)	4, 59, 403
SchI	GAGTC	2 cut(s)	335, 562
ScrFI	CCNGG	2 cut(s)	87, 323
SfcI	CTRYAG	1 cut(s)	296
SinI	GGWCC	2 cut(s)	4, 403
SmlI	CTYRAG	1 cut(s)	369
SmoI	CTYRAG	1 cut(s)	369
Sse9I	AATT	5 cut(s)	133, 167, 191, 377, 468
SsiI	CCGC	5 cut(s)	62, 148, 401, 457, 492
SspMI	CTAG	2 cut(s)	554, 572
StyD4I	CCNGG	2 cut(s)	85, 321
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	5 cut(s)	265, 276, 309, 393, 440
TasI	AATT	5 cut(s)	133, 167, 191, 377, 468
TauI	GCSGC	2 cut(s)	64, 151
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TscAI	CASTG	1 cut(s)	83
TseFI	GTSAC	3 cut(s)	74, 92, 128
TseI	GCWGC	1 cut(s)	151
Tsp45I	GTSAC	3 cut(s)	74, 92, 128
TspRI	CASTG	1 cut(s)	83
Van91I	CCANNNNNTGG	1 cut(s)	56
VpaK11BI	GGWCC	2 cut(s)	4, 403
XapI	RAATTY	3 cut(s)	167, 191, 377
XbaI	TCTAGA	1 cut(s)	571
XspI	CTAG	2 cut(s)	554, 572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.