Rh3AG218400

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0001768
Physical Location & Seq
Forward (+)
22248431 .. 22250206
1776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG218400.1

Sequence Viewer

Length: 504 bp
ATGAAGAGCGAAAAGGTTTTCTTTGATTGTAACCCTGACTTCAATTCTGAAATTTCACCTAAGAGCAGGAGACTCCGCTTCGAGCTGCTGTTAATTATGGCGAAGCTTCCGAGTGTTGAGATTAATCCGCAATTCATAACATTTACGCATGTTACTATGGAGTCCAATAAGTACACATGTGTTCAGGAAACAATGTCGCAGAATAGTATTGTGATTATTGATATGAGTGTGCTGAATCAACGCCGACTCTGCACTTATGAATCCAAACTCCCAAATCCTTGCTTTGAAAGGTGGCCGATGTCTTCTGTAGCAACATGTGCACTACTTCTCCTTGTGCTCCTTCTTGGTAGCTTTGTCTCACCATCAACAACATCACCAGCGGTATCTAGGTTACCCAGGTCTACAGTCTTCTTCAGCAATAGGCGCACTAATTGTCCTCGTGCTCTTTTTTGGTTCTTTCTTTGTCTTACCATCAAGATCACAAGCAATAGTAGCAACATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100
Pfam Domains
Protein Families
Clathrin Clathrin-link Clathrin_H_link Clathrin_propel

Protein Analysis

167

Amino Acids

19.12

Weight (kDa)

9.27

Isoelectric Point (pI)

65.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 401
AciI CCGC 3 cut(s) 76, 128, 380
AcoI YGGCCR 1 cut(s) 293
AcsI RAATTY 1 cut(s) 51
AcuI CTGAAG 1 cut(s) 397
AfaI GTAC 1 cut(s) 173
AflIII ACRYGT 2 cut(s) 176, 314
AgsI TTSAA 2 cut(s) 43, 287
AjnI CCWGG 1 cut(s) 395
AluBI AGCT 3 cut(s) 85, 106, 351
AluI AGCT 3 cut(s) 85, 106, 351
Alw21I GWGCWC 3 cut(s) 322, 339, 445
Alw26I GTCTC 2 cut(s) 64, 361
Alw44I GTGCAC 1 cut(s) 318
AoxI GGCC 1 cut(s) 293
ApaLI GTGCAC 1 cut(s) 318
ApeKI GCWGC 1 cut(s) 85
ApoI RAATTY 1 cut(s) 51
AseI ATTAAT 1 cut(s) 123
AspLEI GCGC 1 cut(s) 426
AsuHPI GGTGA 3 cut(s) 48, 351, 366
BaeGI GKGCMC 1 cut(s) 322
BauI CACGAG 1 cut(s) 438
BbsI GAAGAC 2 cut(s) 294, 400
Bbv12I GWGCWC 3 cut(s) 322, 339, 445
BbvI GCAGC 1 cut(s) 72
BccI CCATC 2 cut(s) 370, 479
BciT130I CCWGG 1 cut(s) 397
BcoDI GTCTC 2 cut(s) 64, 361
BfaI CTAG 2 cut(s) 387, 502
BfmI CTRYAG 2 cut(s) 306, 402
BisI GCNGC 1 cut(s) 86
BlsI GCNGC 1 cut(s) 87
Bme1390I CCNGG 1 cut(s) 397
BmrFI CCNGG 1 cut(s) 397
BpiI GAAGAC 2 cut(s) 294, 400
BsaJI CCNNGG 1 cut(s) 395
BsaXI ACNNNNNCTCC 2 cut(s) 312, 342
BseBI CCWGG 1 cut(s) 397
BseDI CCNNGG 1 cut(s) 395
BseSI GKGCMC 1 cut(s) 322
BseXI GCAGC 1 cut(s) 72
BsgI GTGCAG 1 cut(s) 235
BshFI GGCC 1 cut(s) 295
BsiHKAI GWGCWC 3 cut(s) 322, 339, 445
BsmAI GTCTC 2 cut(s) 64, 361
BsnI GGCC 1 cut(s) 295
Bsp1286I GDGCHC 3 cut(s) 322, 339, 445
Bsp143I GATC 1 cut(s) 477
BspACI CCGC 3 cut(s) 76, 128, 380
BspANI GGCC 1 cut(s) 295
BssECI CCNNGG 1 cut(s) 395
BssMI GATC 1 cut(s) 477
BssSI CACGAG 1 cut(s) 438
Bst2BI CACGAG 1 cut(s) 438
Bst2UI CCWGG 1 cut(s) 397
Bst4CI ACNGT 1 cut(s) 406
BstAPI GCANNNNNTGC 1 cut(s) 317
BstDEI CTNAG 1 cut(s) 60
BstEII GGTNACC 1 cut(s) 390
BstHHI GCGC 1 cut(s) 426
BstKTI GATC 1 cut(s) 480
BstMAI GTCTC 2 cut(s) 64, 361
BstMBI GATC 1 cut(s) 477
BstMWI GCNNNNNNNGC 4 cut(s) 249, 317, 423, 492
BstNI CCWGG 1 cut(s) 397
BstNSI RCATGY 3 cut(s) 152, 180, 318
BstPI GGTNACC 1 cut(s) 390
BstSCI CCNGG 1 cut(s) 395
BstSFI CTRYAG 2 cut(s) 306, 402
BstSLI GKGCMC 1 cut(s) 322
BstV1I GCAGC 1 cut(s) 72
BstV2I GAAGAC 2 cut(s) 294, 400
BsuRI GGCC 1 cut(s) 295
CfoI GCGC 1 cut(s) 426
Csp6I GTAC 1 cut(s) 172
CviAII CATG 3 cut(s) 149, 177, 315
CviJI RGCY 4 cut(s) 85, 106, 295, 351
CviKI_1 RGCY 4 cut(s) 85, 106, 295, 351
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 1 cut(s) 60
DpnI GATC 1 cut(s) 479
DpnII GATC 1 cut(s) 477
EaeI YGGCCR 1 cut(s) 293
Eco57I CTGAAG 1 cut(s) 397
Eco91I GGTNACC 1 cut(s) 390
EcoO65I GGTNACC 1 cut(s) 390
EcoRII CCWGG 1 cut(s) 395
FaeI CATG 3 cut(s) 152, 180, 318
FaiI YATR 8 cut(s) 98, 137, 150, 158, 178, 224, 258, 316
FalI AAGNNNNNCTT 1 cut(s) 37
FatI CATG 3 cut(s) 148, 176, 314
FblI GTMKAC 1 cut(s) 401
Fnu4HI GCNGC 1 cut(s) 86
Fsp4HI GCNGC 1 cut(s) 86
FspBI CTAG 2 cut(s) 387, 502
GlaI GCGC 1 cut(s) 425
GluI GCNGC 1 cut(s) 86
HaeIII GGCC 1 cut(s) 295
HhaI GCGC 1 cut(s) 426
Hin1II CATG 3 cut(s) 152, 180, 318
Hin6I GCGC 1 cut(s) 424
HinP1I GCGC 1 cut(s) 424
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 5 cut(s) 72, 161, 235, 246, 260
HphI GGTGA 3 cut(s) 48, 351, 366
Hpy166II GTNNAC 3 cut(s) 174, 320, 402
Hpy188I TCNGA 2 cut(s) 49, 111
Hpy188III TCNNGA 2 cut(s) 185, 475
Hpy8I GTNNAC 3 cut(s) 174, 320, 402
HpyAV CCTTC 1 cut(s) 350
HpyCH4III ACNGT 1 cut(s) 406
HpyCH4V TGCA 2 cut(s) 252, 320
HpyF10VI GCNNNNNNNGC 4 cut(s) 249, 317, 423, 492
HpyF3I CTNAG 1 cut(s) 60
Hsp92II CATG 3 cut(s) 152, 180, 318
HspAI GCGC 1 cut(s) 424
Kzo9I GATC 1 cut(s) 477
LmnI GCTCC 1 cut(s) 342
LpnPI CCDG 6 cut(s) 48, 52, 170, 382, 390, 409
Lsp1109I GCAGC 1 cut(s) 72
MaeI CTAG 2 cut(s) 387, 502
MaeIII GTNAC 3 cut(s) 29, 151, 390
MalI GATC 1 cut(s) 479
MboI GATC 1 cut(s) 477
MboII GAAGA 4 cut(s) 16, 294, 400, 403
MhlI GDGCHC 3 cut(s) 322, 339, 445
MluCI AATT 5 cut(s) 43, 51, 93, 131, 430
MlyI GAGTC 3 cut(s) 66, 170, 240
MnlI CCTC 1 cut(s) 447
MseI TTAA 2 cut(s) 92, 123
MspA1I CMGCKG 1 cut(s) 380
MspR9I CCNGG 1 cut(s) 397
MvaI CCWGG 1 cut(s) 397
MwoI GCNNNNNNNGC 4 cut(s) 249, 317, 423, 492
NdeII GATC 1 cut(s) 477
NlaIII CATG 3 cut(s) 152, 180, 318
NspI RCATGY 3 cut(s) 152, 180, 318
PciI ACATGT 2 cut(s) 176, 314
PfeI GAWTC 2 cut(s) 235, 260
PkrI GCNGC 1 cut(s) 87
PleI GAGTC 3 cut(s) 66, 169, 240
PpsI GAGTC 3 cut(s) 66, 169, 240
PscI ACATGT 2 cut(s) 176, 314
PshBI ATTAAT 1 cut(s) 123
Psp6I CCWGG 1 cut(s) 395
PspEI GGTNACC 1 cut(s) 390
PspGI CCWGG 1 cut(s) 395
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
SaqAI TTAA 2 cut(s) 92, 123
SatI GCNGC 1 cut(s) 86
Sau3AI GATC 1 cut(s) 477
SchI GAGTC 3 cut(s) 66, 170, 240
ScrFI CCNGG 1 cut(s) 397
SduI GDGCHC 3 cut(s) 322, 339, 445
SetI ASST 8 cut(s) 18, 61, 87, 108, 293, 353, 392, 401
SfcI CTRYAG 2 cut(s) 306, 402
Sse9I AATT 5 cut(s) 43, 51, 93, 131, 430
SsiI CCGC 3 cut(s) 76, 128, 380
SspMI CTAG 2 cut(s) 387, 502
StyD4I CCNGG 1 cut(s) 395
TaaI ACNGT 1 cut(s) 406
TaqI TCGA 1 cut(s) 81
TasI AATT 5 cut(s) 43, 51, 93, 131, 430
TatI WGTACW 1 cut(s) 171
TfiI GAWTC 2 cut(s) 235, 260
Tru1I TTAA 2 cut(s) 92, 123
Tru9I TTAA 2 cut(s) 92, 123
TseI GCWGC 1 cut(s) 85
TspDTI ATGAA 3 cut(s) 17, 124, 273
VneI GTGCAC 1 cut(s) 318
VspI ATTAAT 1 cut(s) 123
XapI RAATTY 1 cut(s) 51
XceI RCATGY 3 cut(s) 152, 180, 318
XmiI GTMKAC 1 cut(s) 401
XspI CTAG 2 cut(s) 387, 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.