Rh3BG144900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Forward (+)
12279986 .. 12280258
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG144900.1

Sequence Viewer

Length: 273 bp
ATGCTAAAAGAAAACAAAAATGAACTACTCCACAATATACTTAAACGCTTCATATCAGTAATCTTCTACCTAAAATTCGATCTACATGGATCAAATCCATTGTATACGCAAATTGAATTATTGAGAAAACAAGTGCAAAAACGAAAGCGCAGAAGCACCTTTGGAGGTCCAGGACTGATCGTAAGGTTTGGAGGAGAGGAGATCGTCGGGGAGAGCGAGCTTATAGTGACGAAGGAGATGGATCGCGGCGGCGGCGACGACGAGGATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.35

Weight (kDa)

8.03

Isoelectric Point (pI)

65.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 104
AccII CGCG 1 cut(s) 246
AciI CCGC 3 cut(s) 246, 249, 252
AclWI GGATC 2 cut(s) 97, 249
AcsI RAATTY 1 cut(s) 74
AgsI TTSAA 1 cut(s) 116
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
AlwI GGATC 2 cut(s) 97, 249
ApoI RAATTY 1 cut(s) 74
AspLEI GCGC 1 cut(s) 150
AspS9I GGNCC 1 cut(s) 167
AvaII GGWCC 1 cut(s) 167
BccI CCATC 1 cut(s) 232
BciT130I CCWGG 1 cut(s) 171
BisI GCNGC 3 cut(s) 247, 250, 253
BlsI GCNGC 3 cut(s) 248, 251, 254
Bme1390I CCNGG 1 cut(s) 171
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 167
BmrFI CCNGG 1 cut(s) 171
BseBI CCWGG 1 cut(s) 171
BseRI GAGGAG 2 cut(s) 207, 212
Bsh1236I CGCG 1 cut(s) 246
Bsp143I GATC 5 cut(s) 79, 89, 177, 201, 241
BspACI CCGC 3 cut(s) 246, 249, 252
BspFNI CGCG 1 cut(s) 246
BspPI GGATC 2 cut(s) 97, 249
BssMI GATC 5 cut(s) 79, 89, 177, 201, 241
BssNAI GTATAC 1 cut(s) 105
Bst1107I GTATAC 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 218
BstFNI CGCG 1 cut(s) 246
BstHHI GCGC 1 cut(s) 150
BstKTI GATC 5 cut(s) 82, 92, 180, 204, 244
BstMBI GATC 5 cut(s) 79, 89, 177, 201, 241
BstMWI GCNNNNNNNGC 1 cut(s) 252
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 169
BstUI CGCG 1 cut(s) 246
BstZ17I GTATAC 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 218
CfoI GCGC 1 cut(s) 150
Cfr13I GGNCC 1 cut(s) 167
CviAII CATG 1 cut(s) 86
CviJI RGCY 1 cut(s) 220
CviKI_1 RGCY 1 cut(s) 220
DpnI GATC 5 cut(s) 81, 91, 179, 203, 243
DpnII GATC 5 cut(s) 79, 89, 177, 201, 241
Eco47I GGWCC 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 169
FaeI CATG 1 cut(s) 89
FaiI YATR 5 cut(s) 38, 53, 87, 105, 224
FatI CATG 1 cut(s) 85
FblI GTMKAC 1 cut(s) 104
Fnu4HI GCNGC 3 cut(s) 247, 250, 253
Fsp4HI GCNGC 3 cut(s) 247, 250, 253
GlaI GCGC 1 cut(s) 149
GluI GCNGC 3 cut(s) 247, 250, 253
HhaI GCGC 1 cut(s) 150
Hin1II CATG 1 cut(s) 89
Hin6I GCGC 1 cut(s) 148
HinP1I GCGC 1 cut(s) 148
HinfI GANTC 1 cut(s) 266
Hpy166II GTNNAC 1 cut(s) 105
Hpy8I GTNNAC 1 cut(s) 105
Hpy99I CGWCG 3 cut(s) 209, 260, 263
HpyAV CCTTC 1 cut(s) 226
HpyCH4V TGCA 1 cut(s) 136
HpyF10VI GCNNNNNNNGC 1 cut(s) 252
Hsp92II CATG 1 cut(s) 89
HspAI GCGC 1 cut(s) 148
Kzo9I GATC 5 cut(s) 79, 89, 177, 201, 241
LpnPI CCDG 2 cut(s) 156, 183
MaeIII GTNAC 1 cut(s) 226
MalI GATC 5 cut(s) 81, 91, 179, 203, 243
MboI GATC 5 cut(s) 79, 89, 177, 201, 241
MboII GAAGA 1 cut(s) 55
MluCI AATT 3 cut(s) 74, 111, 116
MnlI CCTC 4 cut(s) 158, 185, 190, 256
MseI TTAA 2 cut(s) 42, 271
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 252
NdeII GATC 5 cut(s) 79, 89, 177, 201, 241
NlaIII CATG 1 cut(s) 89
NmuCI GTSAC 1 cut(s) 226
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PfeI GAWTC 1 cut(s) 266
PfoI TCCNGGA 1 cut(s) 169
PkrI GCNGC 3 cut(s) 248, 251, 254
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspPI GGNCC 1 cut(s) 167
SaqAI TTAA 2 cut(s) 42, 271
SatI GCNGC 3 cut(s) 247, 250, 253
Sau3AI GATC 5 cut(s) 79, 89, 177, 201, 241
Sau96I GGNCC 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 171
SetI ASST 5 cut(s) 72, 161, 169, 188, 222
SgeI CNNG 7 cut(s) 98, 143, 182, 183, 220, 229, 257
SinI GGWCC 1 cut(s) 167
Sse9I AATT 3 cut(s) 74, 111, 116
SsiI CCGC 3 cut(s) 246, 249, 252
StyD4I CCNGG 1 cut(s) 169
TaqI TCGA 1 cut(s) 78
TasI AATT 3 cut(s) 74, 111, 116
TauI GCSGC 3 cut(s) 249, 252, 255
TfiI GAWTC 1 cut(s) 266
Tru1I TTAA 2 cut(s) 42, 271
Tru9I TTAA 2 cut(s) 42, 271
TseFI GTSAC 1 cut(s) 226
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 2 cut(s) 36, 40
VpaK11BI GGWCC 1 cut(s) 167
XapI RAATTY 1 cut(s) 74
XmiI GTMKAC 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.