Rh3DG146000

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
12468381 .. 12471225
2845 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG146000.1

Sequence Viewer

Length: 327 bp
ATGATCTCTGATGAGAGCTTGGAACTGATTGCCAAGTATTTCAAGAATTTCAATCTCTTTGTGCTTTCGTCCTGTGATGGATTCGGTACCGATGGCCTTGCCTCCATTGCGGCTAATTGCAGGTTCATCTCTCTGCTGCTTCCGAGTGTTGAGATTAATCCGCAATTCATAACATTTACGCATGTTACTATGGAGTCCAATAAGTACACATGTGTTCGAGAAACAACGCTGCAGAATAGTATTGTGATTATTGAAATGAGTGTGCCGAATCAACGCCGACTTTGCACCTATGAATCCAAACTCCTAAATCCTTGCTTTGAAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.

Protein Analysis

108

Amino Acids

12.28

Weight (kDa)

5.29

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 111
Acc65I GGTACC 1 cut(s) 86
AccB1I GGYRCC 1 cut(s) 86
AciI CCGC 2 cut(s) 110, 161
AcsI RAATTY 1 cut(s) 46
AfaI GTAC 2 cut(s) 88, 206
AflIII ACRYGT 1 cut(s) 209
AgsI TTSAA 4 cut(s) 43, 52, 254, 320
AluBI AGCT 1 cut(s) 18
AluI AGCT 1 cut(s) 18
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 2 cut(s) 136, 229
ApoI RAATTY 1 cut(s) 46
AseI ATTAAT 1 cut(s) 156
Asp718I GGTACC 1 cut(s) 86
BanI GGYRCC 1 cut(s) 86
BbvI GCAGC 2 cut(s) 123, 216
BccI CCATC 2 cut(s) 71, 86
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BfmI CTRYAG 1 cut(s) 230
BfuAI ACCTGC 1 cut(s) 111
BisI GCNGC 3 cut(s) 111, 137, 230
BlsI GCNGC 3 cut(s) 112, 138, 231
BmiI GGNNCC 1 cut(s) 88
Bse3DI GCAATG 1 cut(s) 105
BseMI GCAATG 1 cut(s) 105
BseXI GCAGC 2 cut(s) 123, 216
BshFI GGCC 1 cut(s) 96
BshNI GGYRCC 1 cut(s) 86
BsnI GGCC 1 cut(s) 96
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 2 cut(s) 110, 161
BspANI GGCC 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 88
BspMAI CTGCAG 1 cut(s) 234
BspMI ACCTGC 1 cut(s) 111
BspT107I GGYRCC 1 cut(s) 86
BsrDI GCAATG 1 cut(s) 105
BssMI GATC 1 cut(s) 3
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 2 cut(s) 107, 282
BstNSI RCATGY 2 cut(s) 185, 213
BstSFI CTRYAG 1 cut(s) 230
BstV1I GCAGC 2 cut(s) 123, 216
BsuRI GGCC 1 cut(s) 96
BveI ACCTGC 1 cut(s) 111
Csp6I GTAC 2 cut(s) 87, 205
CviAII CATG 2 cut(s) 182, 210
CviJI RGCY 3 cut(s) 18, 96, 113
CviKI_1 RGCY 3 cut(s) 18, 96, 113
CviQI GTAC 2 cut(s) 87, 205
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
FaeI CATG 2 cut(s) 185, 213
FaiI YATR 5 cut(s) 170, 183, 191, 211, 291
FatI CATG 2 cut(s) 181, 209
Fnu4HI GCNGC 3 cut(s) 111, 137, 230
Fsp4HI GCNGC 3 cut(s) 111, 137, 230
GluI GCNGC 3 cut(s) 111, 137, 230
HaeIII GGCC 1 cut(s) 96
Hin1II CATG 2 cut(s) 185, 213
HinfI GANTC 4 cut(s) 81, 194, 268, 293
Hpy166II GTNNAC 1 cut(s) 207
Hpy188I TCNGA 2 cut(s) 10, 144
Hpy188III TCNNGA 2 cut(s) 43, 218
Hpy8I GTNNAC 1 cut(s) 207
HpyCH4V TGCA 3 cut(s) 120, 232, 285
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 282
Hsp92II CATG 2 cut(s) 185, 213
KpnI GGTACC 1 cut(s) 90
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 2 cut(s) 85, 106
Lsp1109I GCAGC 2 cut(s) 123, 216
MaeIII GTNAC 1 cut(s) 184
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MluCI AATT 3 cut(s) 46, 115, 164
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 1 cut(s) 112
MseI TTAA 1 cut(s) 156
MwoI GCNNNNNNNGC 2 cut(s) 107, 282
NdeII GATC 1 cut(s) 3
NlaIII CATG 2 cut(s) 185, 213
NlaIV GGNNCC 1 cut(s) 88
NspI RCATGY 2 cut(s) 185, 213
PciI ACATGT 1 cut(s) 209
PfeI GAWTC 3 cut(s) 81, 268, 293
PkrI GCNGC 3 cut(s) 112, 138, 231
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PscI ACATGT 1 cut(s) 209
PshBI ATTAAT 1 cut(s) 156
PspN4I GGNNCC 1 cut(s) 88
PstI CTGCAG 1 cut(s) 234
RsaI GTAC 2 cut(s) 88, 206
RsaNI GTAC 2 cut(s) 87, 205
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 3 cut(s) 111, 137, 230
Sau3AI GATC 1 cut(s) 3
SchI GAGTC 1 cut(s) 203
SetI ASST 4 cut(s) 20, 125, 290, 326
SfcI CTRYAG 1 cut(s) 230
Sse9I AATT 3 cut(s) 46, 115, 164
SsiI CCGC 2 cut(s) 110, 161
TaqI TCGA 1 cut(s) 217
TasI AATT 3 cut(s) 46, 115, 164
TatI WGTACW 1 cut(s) 204
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 3 cut(s) 81, 268, 293
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TseI GCWGC 2 cut(s) 136, 229
TspDTI ATGAA 3 cut(s) 115, 157, 306
VspI ATTAAT 1 cut(s) 156
XapI RAATTY 1 cut(s) 46
XceI RCATGY 2 cut(s) 185, 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.