Rorug04G0420400

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
58076812 .. 58078088
1277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0420400.1

Sequence Viewer

Length: 1197 bp
ATGGAAGCTATTCTCGAAAACATCAAACCAAAACCACCCACTAATTGGTCGTCTGGCTCTGATTGCTGTACCTGGGGCGACGTAACGTGCGAAAATGGCAAGGTGGTCACCATCATGATCCAAGATCAACATCTCTCCGGCTCTCTCCATCCAGACATCAATAAGCTGACTTCTTTGCAGCGTCTGCACATTATGCGCAACAATCTCACCGGACCCTTCCCAACCCTACAAGGCTTGGCAGAGCTTGAGGAGATTTATGCCAACCAGAACAGCTTCACTTATTTTCCAGTAGATGATTTCTTCTCCGGCCTCGATTCCCTTCAAGAATTCCACGTCGACTACAACCCCTTCCAGGGGTGGCAGATTCCGGATAGCACTAAGTTTGCCTCCAAGCTGACCAGTTTCACAGCTAGTGGTGCAAACATTTCAGGAAAGATCCCGGAATTCTTTGACAGCAACAATATGCCTAGTTTGGTTACCTTGGAGTTGGCTTATAATAATCTCGAAGGTGAATTGCCTGCCAGTTTTTCCGGTTCCGGGATTCAGTCCCTTTTGTTGAACAACAACAATAAGCTCAATGGGACTATCTCTGTGTTACAGAACATGACCAGCTTGACTCGAGTTTGGCTACATGGACCTATGCCCAATTTCATCGGTGGTGCTATTAAGCAAGTGGACGTGACATCTAATAACTTTTGCACCAATGATGCTGGTACTAAATGCAATCCCCGCGTGACTATATTGCTCTCCATTGCCAAAGACATAGGTTACCCTGCTGTGTTTGCAGAGAATTGGATAGGGAATGATCCTTGTGGTGGTAGTACTCATTGGACTGATCTAACATGTTCAGGAAAAGATGACATCACAGTTCTCAATTTTCCCAACATGGGTCTGACGGGTACGATTTCTTCCAATTTTTCATTGCTTACATCGTTGAATAGATTGATACTTAGAGATAATAGTCTAACCGGTACTATACCCCAAGAGCTCACAAATTTGCACAACCTTGAAGAAATAGATCTCTCAAACAATCAACTTTATGGTACAGTACCTAGCTTTCGAGAAAATGTGGTGGTTAAGTTAGGAGGAAACCCAGACATAGGTAAGGACCATCCTAGTGGCCCTACTAATGGTGGAGGTAGCAAGAAATCCACGACTGGTGTGATTGTTGGGGTTGCTATGGGATGTGCCTTCTAG

Protein Analysis

398

Amino Acids

43.07

Weight (kDa)

4.92

Isoelectric Point (pI)

25.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_4 PF12799 310 - 346 8.4e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 495
Acc16I TGCGCA 1 cut(s) 197
AccB7I CCANNNNNTGG 1 cut(s) 45
AccI GTMKAC 1 cut(s) 336
AccII CGCG 1 cut(s) 732
AccIII TCCGGA 1 cut(s) 367
AciI CCGC 1 cut(s) 730
AclWI GGATC 3 cut(s) 112, 430, 800
AcsI RAATTY 3 cut(s) 326, 443, 994
AfaI GTAC 7 cut(s) 70, 715, 823, 901, 973, 1045, 1050
AfiI CCNNNNNNNGG 9 cut(s) 45, 352, 353, 354, 537, 815, 887, 1100, 1130
AflIII ACRYGT 1 cut(s) 842
AgeI ACCGGT 1 cut(s) 968
AgsI TTSAA 4 cut(s) 323, 559, 937, 1010
AjiI CACGTC 2 cut(s) 334, 679
AjnI CCWGG 2 cut(s) 71, 351
Alw21I GWGCWC 1 cut(s) 990
AlwI GGATC 3 cut(s) 112, 430, 800
AlwNI CAGNNNCTG 1 cut(s) 184
Ama87I CYCGRG 1 cut(s) 618
Aor13HI TCCGGA 1 cut(s) 367
AoxI GGCC 2 cut(s) 307, 1120
ApeKI GCWGC 1 cut(s) 178
ApoI RAATTY 3 cut(s) 326, 443, 994
AsiGI ACCGGT 1 cut(s) 968
Asp700I GAANNNNTTC 2 cut(s) 9, 272
AspLEI GCGC 1 cut(s) 198
AspS9I GGNCC 4 cut(s) 212, 635, 1108, 1121
AsuC2I CCSGG 2 cut(s) 440, 538
AsuHPI GGTGA 3 cut(s) 100, 199, 521
AvaI CYCGRG 1 cut(s) 618
AvaII GGWCC 3 cut(s) 212, 635, 1108
BanII GRGCYC 1 cut(s) 990
BarI GAAGNNNNNNTAC 2 cut(s) 892, 924
Bbv12I GWGCWC 1 cut(s) 990
BbvI GCAGC 1 cut(s) 190
BccI CCATC 3 cut(s) 119, 156, 1119
BciT130I CCWGG 2 cut(s) 73, 353
BcnI CCSGG 2 cut(s) 440, 538
BfaI CTAG 5 cut(s) 411, 468, 1053, 1116, 1195
BglII AGATCT 1 cut(s) 1018
BisI GCNGC 1 cut(s) 179
BlsI GCNGC 1 cut(s) 180
BmcAI AGTACT 1 cut(s) 823
Bme1390I CCNGG 4 cut(s) 73, 353, 440, 538
Bme18I GGWCC 3 cut(s) 212, 635, 1108
BmeT110I CYCGRG 1 cut(s) 618
BmgBI CACGTC 2 cut(s) 334, 679
BmgT120I GGNCC 4 cut(s) 212, 635, 1108, 1121
BmiI GGNNCC 2 cut(s) 214, 535
BmrFI CCNGG 4 cut(s) 73, 353, 440, 538
BmsI GCATC 1 cut(s) 697
BpuEI CTTGAG 1 cut(s) 266
BpuMI CCSGG 2 cut(s) 440, 538
BsaBI GATNNNNATC 1 cut(s) 129
BsaJI CCNNGG 3 cut(s) 72, 352, 480
BsaWI WCCGGW 4 cut(s) 209, 367, 530, 968
Bsc4I CCNNNNNNNGG 9 cut(s) 45, 352, 353, 354, 537, 815, 887, 1100, 1130
Bse118I RCCGGY 1 cut(s) 968
Bse1I ACTGG 4 cut(s) 287, 399, 522, 1162
Bse3DI GCAATG 2 cut(s) 750, 920
Bse8I GATNNNNATC 1 cut(s) 129
BseAI TCCGGA 1 cut(s) 367
BseBI CCWGG 2 cut(s) 73, 353
BseDI CCNNGG 3 cut(s) 72, 352, 480
BseGI GGATG 3 cut(s) 148, 1111, 1190
BseJI GATNNNNATC 1 cut(s) 129
BseLI CCNNNNNNNGG 9 cut(s) 45, 352, 353, 354, 537, 815, 887, 1100, 1130
BseMI GCAATG 2 cut(s) 750, 920
BseNI ACTGG 4 cut(s) 287, 399, 522, 1162
BseRI GAGGAG 1 cut(s) 263
BseXI GCAGC 1 cut(s) 190
BsgI GTGCAG 1 cut(s) 170
Bsh1236I CGCG 1 cut(s) 732
BshFI GGCC 2 cut(s) 309, 1122
BshTI ACCGGT 1 cut(s) 968
BsiHKAI GWGCWC 1 cut(s) 990
BsiHKCI CYCGRG 1 cut(s) 618
BsiSI CCGG 8 cut(s) 138, 210, 306, 368, 440, 531, 537, 969
BslFI GGGAC 2 cut(s) 532, 595
BslI CCNNNNNNNGG 9 cut(s) 45, 352, 353, 354, 537, 815, 887, 1100, 1130
BsmFI GGGAC 2 cut(s) 532, 595
BsnI GGCC 2 cut(s) 309, 1122
BsoBI CYCGRG 1 cut(s) 618
Bsp1286I GDGCHC 1 cut(s) 990
Bsp13I TCCGGA 1 cut(s) 367
Bsp143I GATC 6 cut(s) 117, 124, 435, 805, 835, 1018
BspACI CCGC 1 cut(s) 730
BspANI GGCC 2 cut(s) 309, 1122
BspEI TCCGGA 1 cut(s) 367
BspFNI CGCG 1 cut(s) 732
BspHI TCATGA 1 cut(s) 114
BspLI GGNNCC 2 cut(s) 214, 535
BspPI GGATC 3 cut(s) 112, 430, 800
BsrDI GCAATG 2 cut(s) 750, 920
BsrFI RCCGGY 1 cut(s) 968
BsrI ACTGG 4 cut(s) 287, 399, 522, 1162
BssAI RCCGGY 1 cut(s) 968
BssECI CCNNGG 3 cut(s) 72, 352, 480
BssMI GATC 6 cut(s) 117, 124, 435, 805, 835, 1018
BssT1I CCWWGG 1 cut(s) 480
Bst2UI CCWGG 2 cut(s) 73, 353
Bst4CI ACNGT 2 cut(s) 868, 1048
BstAPI GCANNNNNTGC 2 cut(s) 184, 193
BstC8I GCNNGC 1 cut(s) 519
BstDEI CTNAG 2 cut(s) 378, 950
BstEII GGTNACC 3 cut(s) 106, 475, 767
BstF5I GGATG 3 cut(s) 148, 1111, 1190
BstFNI CGCG 1 cut(s) 732
BstHHI GCGC 1 cut(s) 198
BstKTI GATC 6 cut(s) 120, 127, 438, 808, 838, 1021
BstMBI GATC 6 cut(s) 117, 124, 435, 805, 835, 1018
BstMWI GCNNNNNNNGC 7 cut(s) 63, 96, 184, 193, 416, 729, 782
BstNI CCWGG 2 cut(s) 73, 353
BstNSI RCATGY 1 cut(s) 846
BstPI GGTNACC 3 cut(s) 106, 475, 767
BstSCI CCNGG 4 cut(s) 71, 351, 438, 536
BstUI CGCG 1 cut(s) 732
BstV1I GCAGC 1 cut(s) 190
BstX2I RGATCY 2 cut(s) 435, 1018
BstXI CCANNNNNNTGG 1 cut(s) 1118
BstYI RGATCY 2 cut(s) 435, 1018
BsuRI GGCC 2 cut(s) 309, 1122
BtrI CACGTC 2 cut(s) 334, 679
BtsCI GGATG 3 cut(s) 148, 1111, 1190
Cac8I GCNNGC 1 cut(s) 519
CaiI CAGNNNCTG 1 cut(s) 184
CciI TCATGA 1 cut(s) 114
CfoI GCGC 1 cut(s) 198
Cfr10I RCCGGY 1 cut(s) 968
Cfr13I GGNCC 4 cut(s) 212, 635, 1108, 1121
CseI GACGC 1 cut(s) 170
Csp6I GTAC 7 cut(s) 69, 714, 822, 900, 972, 1044, 1049
CspAI ACCGGT 1 cut(s) 968
CviAII CATG 5 cut(s) 115, 604, 632, 843, 886
CviQI GTAC 7 cut(s) 69, 714, 822, 900, 972, 1044, 1049
DdeI CTNAG 2 cut(s) 378, 950
DpnI GATC 6 cut(s) 119, 126, 437, 807, 837, 1020
DpnII GATC 6 cut(s) 117, 124, 435, 805, 835, 1018
Ecl136II GAGCTC 1 cut(s) 988
Eco130I CCWWGG 1 cut(s) 480
Eco24I GRGCYC 1 cut(s) 990
Eco47I GGWCC 3 cut(s) 212, 635, 1108
Eco53kI GAGCTC 1 cut(s) 988
Eco88I CYCGRG 1 cut(s) 618
Eco91I GGTNACC 3 cut(s) 106, 475, 767
EcoICRI GAGCTC 1 cut(s) 988
EcoO65I GGTNACC 3 cut(s) 106, 475, 767
EcoRI GAATTC 2 cut(s) 326, 443
EcoRII CCWGG 2 cut(s) 71, 351
EcoT14I CCWWGG 1 cut(s) 480
EcoT38I GRGCYC 1 cut(s) 990
ErhI CCWWGG 1 cut(s) 480
FaeI CATG 5 cut(s) 118, 607, 635, 846, 889
FaqI GGGAC 2 cut(s) 532, 595
FatI CATG 5 cut(s) 114, 603, 631, 842, 885
FauI CCCGC 1 cut(s) 737
FblI GTMKAC 1 cut(s) 336
Fnu4HI GCNGC 1 cut(s) 179
FokI GGATG 2 cut(s) 135, 1098
FriOI GRGCYC 1 cut(s) 990
Fsp4HI GCNGC 1 cut(s) 179
FspBI CTAG 5 cut(s) 411, 468, 1053, 1116, 1195
FspI TGCGCA 1 cut(s) 197
GlaI GCGC 1 cut(s) 197
GluI GCNGC 1 cut(s) 179
HaeIII GGCC 2 cut(s) 309, 1122
HapII CCGG 8 cut(s) 138, 210, 306, 368, 440, 531, 537, 969
HgaI GACGC 1 cut(s) 170
HhaI GCGC 1 cut(s) 198
Hin1II CATG 5 cut(s) 118, 607, 635, 846, 889
Hin6I GCGC 1 cut(s) 196
HinP1I GCGC 1 cut(s) 196
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HinfI GANTC 4 cut(s) 314, 364, 541, 616
HpaII CCGG 8 cut(s) 138, 210, 306, 368, 440, 531, 537, 969
HphI GGTGA 3 cut(s) 100, 199, 521
Hpy166II GTNNAC 2 cut(s) 337, 676
Hpy188I TCNGA 2 cut(s) 61, 894
Hpy188III TCNNGA 9 cut(s) 14, 115, 152, 323, 368, 429, 503, 849, 1061
Hpy8I GTNNAC 2 cut(s) 337, 676
Hpy99I CGWCG 2 cut(s) 83, 338
HpyAV CCTTC 4 cut(s) 226, 329, 358, 500
HpyCH4III ACNGT 2 cut(s) 868, 1048
HpyCH4IV ACGT 4 cut(s) 81, 86, 333, 678
HpyCH4V TGCA 7 cut(s) 178, 187, 419, 699, 723, 785, 1000
HpyF10VI GCNNNNNNNGC 7 cut(s) 63, 96, 184, 193, 416, 729, 782
HpyF3I CTNAG 2 cut(s) 378, 950
HpySE526I ACGT 4 cut(s) 81, 86, 333, 678
Hsp92II CATG 5 cut(s) 118, 607, 635, 846, 889
HspAI GCGC 1 cut(s) 196
Kpn2I TCCGGA 1 cut(s) 367
Kzo9I GATC 6 cut(s) 117, 124, 435, 805, 835, 1018
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 1 cut(s) 697
MaeI CTAG 5 cut(s) 411, 468, 1053, 1116, 1195
MaeII ACGT 4 cut(s) 81, 86, 333, 678
MaeIII GTNAC 7 cut(s) 82, 106, 475, 594, 679, 733, 767
MalI GATC 6 cut(s) 119, 126, 437, 807, 837, 1020
MboI GATC 6 cut(s) 117, 124, 435, 805, 835, 1018
MboII GAAGA 3 cut(s) 292, 900, 1022
MflI RGATCY 2 cut(s) 435, 1018
MhlI GDGCHC 1 cut(s) 990
MluCI AATT 9 cut(s) 43, 326, 443, 512, 646, 790, 874, 913, 994
MlyI GAGTC 1 cut(s) 610
MnlI CCTC 5 cut(s) 241, 320, 397, 1079, 1130
MroI TCCGGA 1 cut(s) 367
MroXI GAANNNNTTC 2 cut(s) 9, 272
MseI TTAA 2 cut(s) 666, 1077
MslI CAYNNNNRTG 2 cut(s) 113, 1116
MspI CCGG 8 cut(s) 138, 210, 306, 368, 440, 531, 537, 969
MspR9I CCNGG 4 cut(s) 73, 353, 440, 538
MvaI CCWGG 2 cut(s) 73, 353
MvnI CGCG 1 cut(s) 732
MwoI GCNNNNNNNGC 7 cut(s) 63, 96, 184, 193, 416, 729, 782
NciI CCSGG 2 cut(s) 440, 538
NdeII GATC 6 cut(s) 117, 124, 435, 805, 835, 1018
NlaIII CATG 5 cut(s) 118, 607, 635, 846, 889
NlaIV GGNNCC 2 cut(s) 214, 535
NmuCI GTSAC 3 cut(s) 106, 679, 733
NsbI TGCGCA 1 cut(s) 197
NspI RCATGY 1 cut(s) 846
PaeR7I CTCGAG 1 cut(s) 618
PagI TCATGA 1 cut(s) 114
PciI ACATGT 1 cut(s) 842
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PdmI GAANNNNTTC 2 cut(s) 9, 272
PfeI GAWTC 3 cut(s) 314, 364, 541
PflMI CCANNNNNTGG 1 cut(s) 45
PfoI TCCNGGA 2 cut(s) 438, 536
PinAI ACCGGT 1 cut(s) 968
PkrI GCNGC 1 cut(s) 180
PleI GAGTC 1 cut(s) 610
PpsI GAGTC 1 cut(s) 610
PscI ACATGT 1 cut(s) 842
PsiI TTATAA 1 cut(s) 495
Psp124BI GAGCTC 1 cut(s) 990
Psp6I CCWGG 2 cut(s) 71, 351
PspEI GGTNACC 3 cut(s) 106, 475, 767
PspGI CCWGG 2 cut(s) 71, 351
PspN4I GGNNCC 2 cut(s) 214, 535
PspPI GGNCC 4 cut(s) 212, 635, 1108, 1121
PspXI VCTCGAGB 1 cut(s) 618
PstNI CAGNNNCTG 1 cut(s) 184
PsuI RGATCY 2 cut(s) 435, 1018
RsaI GTAC 7 cut(s) 70, 715, 823, 901, 973, 1045, 1050
RsaNI GTAC 7 cut(s) 69, 714, 822, 900, 972, 1044, 1049
RseI CAYNNNNRTG 2 cut(s) 113, 1116
SacI GAGCTC 1 cut(s) 990
SalI GTCGAC 1 cut(s) 335
SaqAI TTAA 2 cut(s) 666, 1077
SatI GCNGC 1 cut(s) 179
Sau3AI GATC 6 cut(s) 117, 124, 435, 805, 835, 1018
Sau96I GGNCC 4 cut(s) 212, 635, 1108, 1121
ScaI AGTACT 1 cut(s) 823
SchI GAGTC 1 cut(s) 610
ScrFI CCNGG 4 cut(s) 73, 353, 440, 538
SduI GDGCHC 1 cut(s) 990
SfaNI GCATC 1 cut(s) 697
Sfr274I CTCGAG 1 cut(s) 618
SinI GGWCC 3 cut(s) 212, 635, 1108
SlaI CTCGAG 1 cut(s) 618
SmiMI CAYNNNNRTG 2 cut(s) 113, 1116
SmlI CTYRAG 2 cut(s) 245, 618
SmoI CTYRAG 2 cut(s) 245, 618
Sse9I AATT 9 cut(s) 43, 326, 443, 512, 646, 790, 874, 913, 994
SsiI CCGC 1 cut(s) 730
SspMI CTAG 5 cut(s) 411, 468, 1053, 1116, 1195
SstI GAGCTC 1 cut(s) 990
StyD4I CCNGG 4 cut(s) 71, 351, 438, 536
StyI CCWWGG 1 cut(s) 480
TaaI ACNGT 2 cut(s) 868, 1048
TaiI ACGT 4 cut(s) 84, 89, 336, 681
TaqI TCGA 6 cut(s) 15, 312, 336, 504, 619, 1060
TasI AATT 9 cut(s) 43, 326, 443, 512, 646, 790, 874, 913, 994
TatI WGTACW 1 cut(s) 821
TfiI GAWTC 3 cut(s) 314, 364, 541
Tru1I TTAA 2 cut(s) 666, 1077
Tru9I TTAA 2 cut(s) 666, 1077
TseFI GTSAC 3 cut(s) 106, 679, 733
TseI GCWGC 1 cut(s) 178
Tsp45I GTSAC 3 cut(s) 106, 679, 733
TspDTI ATGAA 2 cut(s) 640, 909
Van91I CCANNNNNTGG 1 cut(s) 45
VpaK11BI GGWCC 3 cut(s) 212, 635, 1108
XapI RAATTY 3 cut(s) 326, 443, 994
XceI RCATGY 1 cut(s) 846
XcmI CCANNNNNNNNNTGG 1 cut(s) 42
XhoI CTCGAG 1 cut(s) 618
XmiI GTMKAC 1 cut(s) 336
XmnI GAANNNNTTC 2 cut(s) 9, 272
XspI CTAG 5 cut(s) 411, 468, 1053, 1116, 1195
ZrmI AGTACT 1 cut(s) 823
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.