The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRR_4 | PF12799 | 310 - 346 | 8.4e-06 | Leucine Rich repeats (2 copies) |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 495 |
| Acc16I | TGCGCA | 1 cut(s) | 197 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 45 |
| AccI | GTMKAC | 1 cut(s) | 336 |
| AccII | CGCG | 1 cut(s) | 732 |
| AccIII | TCCGGA | 1 cut(s) | 367 |
| AciI | CCGC | 1 cut(s) | 730 |
| AclWI | GGATC | 3 cut(s) | 112, 430, 800 |
| AcsI | RAATTY | 3 cut(s) | 326, 443, 994 |
| AfaI | GTAC | 7 cut(s) | 70, 715, 823, 901, 973, 1045, 1050 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 45, 352, 353, 354, 537, 815, 887, 1100, 1130 |
| AflIII | ACRYGT | 1 cut(s) | 842 |
| AgeI | ACCGGT | 1 cut(s) | 968 |
| AgsI | TTSAA | 4 cut(s) | 323, 559, 937, 1010 |
| AjiI | CACGTC | 2 cut(s) | 334, 679 |
| AjnI | CCWGG | 2 cut(s) | 71, 351 |
| Alw21I | GWGCWC | 1 cut(s) | 990 |
| AlwI | GGATC | 3 cut(s) | 112, 430, 800 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 184 |
| Ama87I | CYCGRG | 1 cut(s) | 618 |
| Aor13HI | TCCGGA | 1 cut(s) | 367 |
| AoxI | GGCC | 2 cut(s) | 307, 1120 |
| ApeKI | GCWGC | 1 cut(s) | 178 |
| ApoI | RAATTY | 3 cut(s) | 326, 443, 994 |
| AsiGI | ACCGGT | 1 cut(s) | 968 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 9, 272 |
| AspLEI | GCGC | 1 cut(s) | 198 |
| AspS9I | GGNCC | 4 cut(s) | 212, 635, 1108, 1121 |
| AsuC2I | CCSGG | 2 cut(s) | 440, 538 |
| AsuHPI | GGTGA | 3 cut(s) | 100, 199, 521 |
| AvaI | CYCGRG | 1 cut(s) | 618 |
| AvaII | GGWCC | 3 cut(s) | 212, 635, 1108 |
| BanII | GRGCYC | 1 cut(s) | 990 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 892, 924 |
| Bbv12I | GWGCWC | 1 cut(s) | 990 |
| BbvI | GCAGC | 1 cut(s) | 190 |
| BccI | CCATC | 3 cut(s) | 119, 156, 1119 |
| BciT130I | CCWGG | 2 cut(s) | 73, 353 |
| BcnI | CCSGG | 2 cut(s) | 440, 538 |
| BfaI | CTAG | 5 cut(s) | 411, 468, 1053, 1116, 1195 |
| BglII | AGATCT | 1 cut(s) | 1018 |
| BisI | GCNGC | 1 cut(s) | 179 |
| BlsI | GCNGC | 1 cut(s) | 180 |
| BmcAI | AGTACT | 1 cut(s) | 823 |
| Bme1390I | CCNGG | 4 cut(s) | 73, 353, 440, 538 |
| Bme18I | GGWCC | 3 cut(s) | 212, 635, 1108 |
| BmeT110I | CYCGRG | 1 cut(s) | 618 |
| BmgBI | CACGTC | 2 cut(s) | 334, 679 |
| BmgT120I | GGNCC | 4 cut(s) | 212, 635, 1108, 1121 |
| BmiI | GGNNCC | 2 cut(s) | 214, 535 |
| BmrFI | CCNGG | 4 cut(s) | 73, 353, 440, 538 |
| BmsI | GCATC | 1 cut(s) | 697 |
| BpuEI | CTTGAG | 1 cut(s) | 266 |
| BpuMI | CCSGG | 2 cut(s) | 440, 538 |
| BsaBI | GATNNNNATC | 1 cut(s) | 129 |
| BsaJI | CCNNGG | 3 cut(s) | 72, 352, 480 |
| BsaWI | WCCGGW | 4 cut(s) | 209, 367, 530, 968 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 45, 352, 353, 354, 537, 815, 887, 1100, 1130 |
| Bse118I | RCCGGY | 1 cut(s) | 968 |
| Bse1I | ACTGG | 4 cut(s) | 287, 399, 522, 1162 |
| Bse3DI | GCAATG | 2 cut(s) | 750, 920 |
| Bse8I | GATNNNNATC | 1 cut(s) | 129 |
| BseAI | TCCGGA | 1 cut(s) | 367 |
| BseBI | CCWGG | 2 cut(s) | 73, 353 |
| BseDI | CCNNGG | 3 cut(s) | 72, 352, 480 |
| BseGI | GGATG | 3 cut(s) | 148, 1111, 1190 |
| BseJI | GATNNNNATC | 1 cut(s) | 129 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 45, 352, 353, 354, 537, 815, 887, 1100, 1130 |
| BseMI | GCAATG | 2 cut(s) | 750, 920 |
| BseNI | ACTGG | 4 cut(s) | 287, 399, 522, 1162 |
| BseRI | GAGGAG | 1 cut(s) | 263 |
| BseXI | GCAGC | 1 cut(s) | 190 |
| BsgI | GTGCAG | 1 cut(s) | 170 |
| Bsh1236I | CGCG | 1 cut(s) | 732 |
| BshFI | GGCC | 2 cut(s) | 309, 1122 |
| BshTI | ACCGGT | 1 cut(s) | 968 |
| BsiHKAI | GWGCWC | 1 cut(s) | 990 |
| BsiHKCI | CYCGRG | 1 cut(s) | 618 |
| BsiSI | CCGG | 8 cut(s) | 138, 210, 306, 368, 440, 531, 537, 969 |
| BslFI | GGGAC | 2 cut(s) | 532, 595 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 45, 352, 353, 354, 537, 815, 887, 1100, 1130 |
| BsmFI | GGGAC | 2 cut(s) | 532, 595 |
| BsnI | GGCC | 2 cut(s) | 309, 1122 |
| BsoBI | CYCGRG | 1 cut(s) | 618 |
| Bsp1286I | GDGCHC | 1 cut(s) | 990 |
| Bsp13I | TCCGGA | 1 cut(s) | 367 |
| Bsp143I | GATC | 6 cut(s) | 117, 124, 435, 805, 835, 1018 |
| BspACI | CCGC | 1 cut(s) | 730 |
| BspANI | GGCC | 2 cut(s) | 309, 1122 |
| BspEI | TCCGGA | 1 cut(s) | 367 |
| BspFNI | CGCG | 1 cut(s) | 732 |
| BspHI | TCATGA | 1 cut(s) | 114 |
| BspLI | GGNNCC | 2 cut(s) | 214, 535 |
| BspPI | GGATC | 3 cut(s) | 112, 430, 800 |
| BsrDI | GCAATG | 2 cut(s) | 750, 920 |
| BsrFI | RCCGGY | 1 cut(s) | 968 |
| BsrI | ACTGG | 4 cut(s) | 287, 399, 522, 1162 |
| BssAI | RCCGGY | 1 cut(s) | 968 |
| BssECI | CCNNGG | 3 cut(s) | 72, 352, 480 |
| BssMI | GATC | 6 cut(s) | 117, 124, 435, 805, 835, 1018 |
| BssT1I | CCWWGG | 1 cut(s) | 480 |
| Bst2UI | CCWGG | 2 cut(s) | 73, 353 |
| Bst4CI | ACNGT | 2 cut(s) | 868, 1048 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 184, 193 |
| BstC8I | GCNNGC | 1 cut(s) | 519 |
| BstDEI | CTNAG | 2 cut(s) | 378, 950 |
| BstEII | GGTNACC | 3 cut(s) | 106, 475, 767 |
| BstF5I | GGATG | 3 cut(s) | 148, 1111, 1190 |
| BstFNI | CGCG | 1 cut(s) | 732 |
| BstHHI | GCGC | 1 cut(s) | 198 |
| BstKTI | GATC | 6 cut(s) | 120, 127, 438, 808, 838, 1021 |
| BstMBI | GATC | 6 cut(s) | 117, 124, 435, 805, 835, 1018 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 63, 96, 184, 193, 416, 729, 782 |
| BstNI | CCWGG | 2 cut(s) | 73, 353 |
| BstNSI | RCATGY | 1 cut(s) | 846 |
| BstPI | GGTNACC | 3 cut(s) | 106, 475, 767 |
| BstSCI | CCNGG | 4 cut(s) | 71, 351, 438, 536 |
| BstUI | CGCG | 1 cut(s) | 732 |
| BstV1I | GCAGC | 1 cut(s) | 190 |
| BstX2I | RGATCY | 2 cut(s) | 435, 1018 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1118 |
| BstYI | RGATCY | 2 cut(s) | 435, 1018 |
| BsuRI | GGCC | 2 cut(s) | 309, 1122 |
| BtrI | CACGTC | 2 cut(s) | 334, 679 |
| BtsCI | GGATG | 3 cut(s) | 148, 1111, 1190 |
| Cac8I | GCNNGC | 1 cut(s) | 519 |
| CaiI | CAGNNNCTG | 1 cut(s) | 184 |
| CciI | TCATGA | 1 cut(s) | 114 |
| CfoI | GCGC | 1 cut(s) | 198 |
| Cfr10I | RCCGGY | 1 cut(s) | 968 |
| Cfr13I | GGNCC | 4 cut(s) | 212, 635, 1108, 1121 |
| CseI | GACGC | 1 cut(s) | 170 |
| Csp6I | GTAC | 7 cut(s) | 69, 714, 822, 900, 972, 1044, 1049 |
| CspAI | ACCGGT | 1 cut(s) | 968 |
| CviAII | CATG | 5 cut(s) | 115, 604, 632, 843, 886 |
| CviQI | GTAC | 7 cut(s) | 69, 714, 822, 900, 972, 1044, 1049 |
| DdeI | CTNAG | 2 cut(s) | 378, 950 |
| DpnI | GATC | 6 cut(s) | 119, 126, 437, 807, 837, 1020 |
| DpnII | GATC | 6 cut(s) | 117, 124, 435, 805, 835, 1018 |
| Ecl136II | GAGCTC | 1 cut(s) | 988 |
| Eco130I | CCWWGG | 1 cut(s) | 480 |
| Eco24I | GRGCYC | 1 cut(s) | 990 |
| Eco47I | GGWCC | 3 cut(s) | 212, 635, 1108 |
| Eco53kI | GAGCTC | 1 cut(s) | 988 |
| Eco88I | CYCGRG | 1 cut(s) | 618 |
| Eco91I | GGTNACC | 3 cut(s) | 106, 475, 767 |
| EcoICRI | GAGCTC | 1 cut(s) | 988 |
| EcoO65I | GGTNACC | 3 cut(s) | 106, 475, 767 |
| EcoRI | GAATTC | 2 cut(s) | 326, 443 |
| EcoRII | CCWGG | 2 cut(s) | 71, 351 |
| EcoT14I | CCWWGG | 1 cut(s) | 480 |
| EcoT38I | GRGCYC | 1 cut(s) | 990 |
| ErhI | CCWWGG | 1 cut(s) | 480 |
| FaeI | CATG | 5 cut(s) | 118, 607, 635, 846, 889 |
| FaqI | GGGAC | 2 cut(s) | 532, 595 |
| FatI | CATG | 5 cut(s) | 114, 603, 631, 842, 885 |
| FauI | CCCGC | 1 cut(s) | 737 |
| FblI | GTMKAC | 1 cut(s) | 336 |
| Fnu4HI | GCNGC | 1 cut(s) | 179 |
| FokI | GGATG | 2 cut(s) | 135, 1098 |
| FriOI | GRGCYC | 1 cut(s) | 990 |
| Fsp4HI | GCNGC | 1 cut(s) | 179 |
| FspBI | CTAG | 5 cut(s) | 411, 468, 1053, 1116, 1195 |
| FspI | TGCGCA | 1 cut(s) | 197 |
| GlaI | GCGC | 1 cut(s) | 197 |
| GluI | GCNGC | 1 cut(s) | 179 |
| HaeIII | GGCC | 2 cut(s) | 309, 1122 |
| HapII | CCGG | 8 cut(s) | 138, 210, 306, 368, 440, 531, 537, 969 |
| HgaI | GACGC | 1 cut(s) | 170 |
| HhaI | GCGC | 1 cut(s) | 198 |
| Hin1II | CATG | 5 cut(s) | 118, 607, 635, 846, 889 |
| Hin6I | GCGC | 1 cut(s) | 196 |
| HinP1I | GCGC | 1 cut(s) | 196 |
| HincII | GTYRAC | 1 cut(s) | 337 |
| HindII | GTYRAC | 1 cut(s) | 337 |
| HinfI | GANTC | 4 cut(s) | 314, 364, 541, 616 |
| HpaII | CCGG | 8 cut(s) | 138, 210, 306, 368, 440, 531, 537, 969 |
| HphI | GGTGA | 3 cut(s) | 100, 199, 521 |
| Hpy166II | GTNNAC | 2 cut(s) | 337, 676 |
| Hpy188I | TCNGA | 2 cut(s) | 61, 894 |
| Hpy188III | TCNNGA | 9 cut(s) | 14, 115, 152, 323, 368, 429, 503, 849, 1061 |
| Hpy8I | GTNNAC | 2 cut(s) | 337, 676 |
| Hpy99I | CGWCG | 2 cut(s) | 83, 338 |
| HpyAV | CCTTC | 4 cut(s) | 226, 329, 358, 500 |
| HpyCH4III | ACNGT | 2 cut(s) | 868, 1048 |
| HpyCH4IV | ACGT | 4 cut(s) | 81, 86, 333, 678 |
| HpyCH4V | TGCA | 7 cut(s) | 178, 187, 419, 699, 723, 785, 1000 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 63, 96, 184, 193, 416, 729, 782 |
| HpyF3I | CTNAG | 2 cut(s) | 378, 950 |
| HpySE526I | ACGT | 4 cut(s) | 81, 86, 333, 678 |
| Hsp92II | CATG | 5 cut(s) | 118, 607, 635, 846, 889 |
| HspAI | GCGC | 1 cut(s) | 196 |
| Kpn2I | TCCGGA | 1 cut(s) | 367 |
| Kzo9I | GATC | 6 cut(s) | 117, 124, 435, 805, 835, 1018 |
| Lsp1109I | GCAGC | 1 cut(s) | 190 |
| LweI | GCATC | 1 cut(s) | 697 |
| MaeI | CTAG | 5 cut(s) | 411, 468, 1053, 1116, 1195 |
| MaeII | ACGT | 4 cut(s) | 81, 86, 333, 678 |
| MaeIII | GTNAC | 7 cut(s) | 82, 106, 475, 594, 679, 733, 767 |
| MalI | GATC | 6 cut(s) | 119, 126, 437, 807, 837, 1020 |
| MboI | GATC | 6 cut(s) | 117, 124, 435, 805, 835, 1018 |
| MboII | GAAGA | 3 cut(s) | 292, 900, 1022 |
| MflI | RGATCY | 2 cut(s) | 435, 1018 |
| MhlI | GDGCHC | 1 cut(s) | 990 |
| MluCI | AATT | 9 cut(s) | 43, 326, 443, 512, 646, 790, 874, 913, 994 |
| MlyI | GAGTC | 1 cut(s) | 610 |
| MnlI | CCTC | 5 cut(s) | 241, 320, 397, 1079, 1130 |
| MroI | TCCGGA | 1 cut(s) | 367 |
| MroXI | GAANNNNTTC | 2 cut(s) | 9, 272 |
| MseI | TTAA | 2 cut(s) | 666, 1077 |
| MslI | CAYNNNNRTG | 2 cut(s) | 113, 1116 |
| MspI | CCGG | 8 cut(s) | 138, 210, 306, 368, 440, 531, 537, 969 |
| MspR9I | CCNGG | 4 cut(s) | 73, 353, 440, 538 |
| MvaI | CCWGG | 2 cut(s) | 73, 353 |
| MvnI | CGCG | 1 cut(s) | 732 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 63, 96, 184, 193, 416, 729, 782 |
| NciI | CCSGG | 2 cut(s) | 440, 538 |
| NdeII | GATC | 6 cut(s) | 117, 124, 435, 805, 835, 1018 |
| NlaIII | CATG | 5 cut(s) | 118, 607, 635, 846, 889 |
| NlaIV | GGNNCC | 2 cut(s) | 214, 535 |
| NmuCI | GTSAC | 3 cut(s) | 106, 679, 733 |
| NsbI | TGCGCA | 1 cut(s) | 197 |
| NspI | RCATGY | 1 cut(s) | 846 |
| PaeR7I | CTCGAG | 1 cut(s) | 618 |
| PagI | TCATGA | 1 cut(s) | 114 |
| PciI | ACATGT | 1 cut(s) | 842 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 87 |
| PdmI | GAANNNNTTC | 2 cut(s) | 9, 272 |
| PfeI | GAWTC | 3 cut(s) | 314, 364, 541 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 45 |
| PfoI | TCCNGGA | 2 cut(s) | 438, 536 |
| PinAI | ACCGGT | 1 cut(s) | 968 |
| PkrI | GCNGC | 1 cut(s) | 180 |
| PleI | GAGTC | 1 cut(s) | 610 |
| PpsI | GAGTC | 1 cut(s) | 610 |
| PscI | ACATGT | 1 cut(s) | 842 |
| PsiI | TTATAA | 1 cut(s) | 495 |
| Psp124BI | GAGCTC | 1 cut(s) | 990 |
| Psp6I | CCWGG | 2 cut(s) | 71, 351 |
| PspEI | GGTNACC | 3 cut(s) | 106, 475, 767 |
| PspGI | CCWGG | 2 cut(s) | 71, 351 |
| PspN4I | GGNNCC | 2 cut(s) | 214, 535 |
| PspPI | GGNCC | 4 cut(s) | 212, 635, 1108, 1121 |
| PspXI | VCTCGAGB | 1 cut(s) | 618 |
| PstNI | CAGNNNCTG | 1 cut(s) | 184 |
| PsuI | RGATCY | 2 cut(s) | 435, 1018 |
| RsaI | GTAC | 7 cut(s) | 70, 715, 823, 901, 973, 1045, 1050 |
| RsaNI | GTAC | 7 cut(s) | 69, 714, 822, 900, 972, 1044, 1049 |
| RseI | CAYNNNNRTG | 2 cut(s) | 113, 1116 |
| SacI | GAGCTC | 1 cut(s) | 990 |
| SalI | GTCGAC | 1 cut(s) | 335 |
| SaqAI | TTAA | 2 cut(s) | 666, 1077 |
| SatI | GCNGC | 1 cut(s) | 179 |
| Sau3AI | GATC | 6 cut(s) | 117, 124, 435, 805, 835, 1018 |
| Sau96I | GGNCC | 4 cut(s) | 212, 635, 1108, 1121 |
| ScaI | AGTACT | 1 cut(s) | 823 |
| SchI | GAGTC | 1 cut(s) | 610 |
| ScrFI | CCNGG | 4 cut(s) | 73, 353, 440, 538 |
| SduI | GDGCHC | 1 cut(s) | 990 |
| SfaNI | GCATC | 1 cut(s) | 697 |
| Sfr274I | CTCGAG | 1 cut(s) | 618 |
| SinI | GGWCC | 3 cut(s) | 212, 635, 1108 |
| SlaI | CTCGAG | 1 cut(s) | 618 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 113, 1116 |
| SmlI | CTYRAG | 2 cut(s) | 245, 618 |
| SmoI | CTYRAG | 2 cut(s) | 245, 618 |
| Sse9I | AATT | 9 cut(s) | 43, 326, 443, 512, 646, 790, 874, 913, 994 |
| SsiI | CCGC | 1 cut(s) | 730 |
| SspMI | CTAG | 5 cut(s) | 411, 468, 1053, 1116, 1195 |
| SstI | GAGCTC | 1 cut(s) | 990 |
| StyD4I | CCNGG | 4 cut(s) | 71, 351, 438, 536 |
| StyI | CCWWGG | 1 cut(s) | 480 |
| TaaI | ACNGT | 2 cut(s) | 868, 1048 |
| TaiI | ACGT | 4 cut(s) | 84, 89, 336, 681 |
| TaqI | TCGA | 6 cut(s) | 15, 312, 336, 504, 619, 1060 |
| TasI | AATT | 9 cut(s) | 43, 326, 443, 512, 646, 790, 874, 913, 994 |
| TatI | WGTACW | 1 cut(s) | 821 |
| TfiI | GAWTC | 3 cut(s) | 314, 364, 541 |
| Tru1I | TTAA | 2 cut(s) | 666, 1077 |
| Tru9I | TTAA | 2 cut(s) | 666, 1077 |
| TseFI | GTSAC | 3 cut(s) | 106, 679, 733 |
| TseI | GCWGC | 1 cut(s) | 178 |
| Tsp45I | GTSAC | 3 cut(s) | 106, 679, 733 |
| TspDTI | ATGAA | 2 cut(s) | 640, 909 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 45 |
| VpaK11BI | GGWCC | 3 cut(s) | 212, 635, 1108 |
| XapI | RAATTY | 3 cut(s) | 326, 443, 994 |
| XceI | RCATGY | 1 cut(s) | 846 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 42 |
| XhoI | CTCGAG | 1 cut(s) | 618 |
| XmiI | GTMKAC | 1 cut(s) | 336 |
| XmnI | GAANNNNTTC | 2 cut(s) | 9, 272 |
| XspI | CTAG | 5 cut(s) | 411, 468, 1053, 1116, 1195 |
| ZrmI | AGTACT | 1 cut(s) | 823 |