Rh6AG387400

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001768
Physical Location & Seq
Forward (+)
58649869 .. 58656950
7082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG387400.1

Sequence Viewer

Length: 558 bp
ATGTCTTCTCTCGCCTCGATCTACTTCACCGTTGAGTCCGACATTGAAGCTGTTCTTCAGCTTCCGAGTGTTGAGATTAATCCACAATTCATAACATTTATGCATGTTAATATGGAGTCCAATAAGTACACATGTGTTCGGAAAACAATGCCGCAGAATAGTATTGTGATTATTGATATGAGTGTGCCGAATCAACTCCGACTACGCCGACTCTGCACTTATGAATCCAAACTCCCATATCCTTGCATTGAAAGGGATCCACTGAATGTCCAAATATTCCTCAAAATGCATAGGTCTGATTATGCTAAAAGATGGTTGAAGGAAATGCAAAAGATTGATGAGGACCACACCTTAACTCAACTTGAAACAGCATGGCAAAATCTAGCTGTGTTACAGTACTGGTATGATATATTGAGCAAATATACAGAGGAGGTTCATATTCCGAAATTAAACAAGTTCAAGCTCATAGCACATGGTTTTGTTCCCACCATCCCACCAGCTAGCACAGGCTGTCCAGATCCATTTGCTGCAGTTTTAAGGTTTTCTGCGACAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100
Pfam Domains
Protein Families
Clathrin Clathrin-link Clathrin_H_link Clathrin_propel

Protein Analysis

185

Amino Acids

21.5

Weight (kDa)

6.95

Isoelectric Point (pI)

67.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Coatomer_E PF04733 84 - 130 2.1e-15 Coatomer epsilon subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 152
AclWI GGATC 3 cut(s) 251, 264, 512
AcuI CTGAAG 1 cut(s) 41
AfaI GTAC 2 cut(s) 128, 398
AflIII ACRYGT 1 cut(s) 131
AgsI TTSAA 5 cut(s) 47, 251, 319, 365, 460
AluBI AGCT 5 cut(s) 50, 61, 386, 463, 500
AluI AGCT 5 cut(s) 50, 61, 386, 463, 500
AlwI GGATC 3 cut(s) 251, 264, 512
ApeKI GCWGC 1 cut(s) 527
AseI ATTAAT 1 cut(s) 78
Asp700I GAANNNNTTC 1 cut(s) 51
AspS9I GGNCC 1 cut(s) 343
AsuHPI GGTGA 1 cut(s) 19
AsuNHI GCTAGC 1 cut(s) 500
AvaII GGWCC 1 cut(s) 343
BamHI GGATCC 1 cut(s) 256
BbvI GCAGC 1 cut(s) 514
BccI CCATC 2 cut(s) 306, 497
BfaI CTAG 2 cut(s) 383, 501
BfmI CTRYAG 1 cut(s) 528
BisI GCNGC 2 cut(s) 152, 528
BlsI GCNGC 2 cut(s) 153, 529
BmcAI AGTACT 1 cut(s) 398
Bme18I GGWCC 1 cut(s) 343
BmgT120I GGNCC 1 cut(s) 343
BmiI GGNNCC 1 cut(s) 258
BmtI GCTAGC 1 cut(s) 504
Bse1I ACTGG 1 cut(s) 404
BseGI GGATG 1 cut(s) 489
BseNI ACTGG 1 cut(s) 404
BseRI GAGGAG 1 cut(s) 443
BseXI GCAGC 1 cut(s) 514
BsgI GTGCAG 1 cut(s) 199
Bsp143I GATC 3 cut(s) 18, 256, 517
BspACI CCGC 1 cut(s) 152
BspLI GGNNCC 1 cut(s) 258
BspMAI CTGCAG 1 cut(s) 532
BspOI GCTAGC 1 cut(s) 504
BspPI GGATC 3 cut(s) 251, 264, 512
BsrI ACTGG 1 cut(s) 404
BssMI GATC 3 cut(s) 18, 256, 517
Bst4CI ACNGT 2 cut(s) 31, 396
BstC8I GCNNGC 1 cut(s) 502
BstF5I GGATG 1 cut(s) 489
BstKTI GATC 3 cut(s) 21, 259, 520
BstMBI GATC 3 cut(s) 18, 256, 517
BstMWI GCNNNNNNNGC 1 cut(s) 213
BstNSI RCATGY 2 cut(s) 107, 135
BstSFI CTRYAG 1 cut(s) 528
BstV1I GCAGC 1 cut(s) 514
BstX2I RGATCY 2 cut(s) 256, 517
BstYI RGATCY 2 cut(s) 256, 517
BtsCI GGATG 1 cut(s) 489
BtsIMutI CAGTG 1 cut(s) 260
Cac8I GCNNGC 1 cut(s) 502
Cfr13I GGNCC 1 cut(s) 343
Csp6I GTAC 2 cut(s) 127, 397
CviAII CATG 4 cut(s) 104, 132, 372, 473
CviJI RGCY 6 cut(s) 50, 61, 386, 463, 500, 510
CviKI_1 RGCY 6 cut(s) 50, 61, 386, 463, 500, 510
CviQI GTAC 2 cut(s) 127, 397
DpnI GATC 3 cut(s) 20, 258, 519
DpnII GATC 3 cut(s) 18, 256, 517
Eco47I GGWCC 1 cut(s) 343
Eco57I CTGAAG 1 cut(s) 41
EcoT22I ATGCAT 2 cut(s) 105, 291
FaeI CATG 4 cut(s) 107, 135, 375, 476
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FatI CATG 4 cut(s) 103, 131, 371, 472
Fnu4HI GCNGC 2 cut(s) 152, 528
FokI GGATG 1 cut(s) 476
Fsp4HI GCNGC 2 cut(s) 152, 528
FspBI CTAG 2 cut(s) 383, 501
GluI GCNGC 2 cut(s) 152, 528
Hin1II CATG 4 cut(s) 107, 135, 375, 476
HinfI GANTC 5 cut(s) 35, 116, 190, 210, 224
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 129
Hpy188I TCNGA 6 cut(s) 40, 66, 141, 200, 298, 444
Hpy188III TCNNGA 1 cut(s) 515
Hpy8I GTNNAC 1 cut(s) 129
HpyAV CCTTC 1 cut(s) 313
HpyCH4III ACNGT 2 cut(s) 31, 396
HpyCH4V TGCA 6 cut(s) 103, 216, 246, 289, 328, 530
HpyF10VI GCNNNNNNNGC 1 cut(s) 213
Hsp92II CATG 4 cut(s) 107, 135, 375, 476
Kzo9I GATC 3 cut(s) 18, 256, 517
LpnPI CCDG 4 cut(s) 385, 492, 510, 528
Lsp1109I GCAGC 1 cut(s) 514
MaeI CTAG 2 cut(s) 383, 501
MaeIII GTNAC 1 cut(s) 390
MalI GATC 3 cut(s) 20, 258, 519
MboI GATC 3 cut(s) 18, 256, 517
MboII GAAGA 1 cut(s) 47
MflI RGATCY 2 cut(s) 256, 517
MluCI AATT 3 cut(s) 86, 446, 553
MlyI GAGTC 3 cut(s) 44, 125, 204
MmeI TCCRAC 2 cut(s) 63, 223
MnlI CCTC 5 cut(s) 25, 290, 334, 421, 424
Mph1103I ATGCAT 2 cut(s) 105, 291
MroXI GAANNNNTTC 1 cut(s) 51
MseI TTAA 6 cut(s) 78, 108, 353, 449, 536, 556
MwoI GCNNNNNNNGC 1 cut(s) 213
NdeII GATC 3 cut(s) 18, 256, 517
NheI GCTAGC 1 cut(s) 500
NlaIII CATG 4 cut(s) 107, 135, 375, 476
NlaIV GGNNCC 1 cut(s) 258
NsiI ATGCAT 2 cut(s) 105, 291
NspI RCATGY 2 cut(s) 107, 135
PciI ACATGT 1 cut(s) 131
PdmI GAANNNNTTC 1 cut(s) 51
PfeI GAWTC 2 cut(s) 190, 224
PkrI GCNGC 2 cut(s) 153, 529
PleI GAGTC 3 cut(s) 43, 124, 204
PpsI GAGTC 3 cut(s) 43, 124, 204
PscI ACATGT 1 cut(s) 131
PshBI ATTAAT 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 258
PspPI GGNCC 1 cut(s) 343
PstI CTGCAG 1 cut(s) 532
PsuI RGATCY 2 cut(s) 256, 517
RsaI GTAC 2 cut(s) 128, 398
RsaNI GTAC 2 cut(s) 127, 397
SaqAI TTAA 6 cut(s) 78, 108, 353, 449, 536, 556
SatI GCNGC 2 cut(s) 152, 528
Sau3AI GATC 3 cut(s) 18, 256, 517
Sau96I GGNCC 1 cut(s) 343
ScaI AGTACT 1 cut(s) 398
SchI GAGTC 3 cut(s) 44, 125, 204
SetI ASST 9 cut(s) 52, 63, 296, 353, 388, 435, 465, 502, 542
SfcI CTRYAG 1 cut(s) 528
SinI GGWCC 1 cut(s) 343
Sse9I AATT 3 cut(s) 86, 446, 553
SsiI CCGC 1 cut(s) 152
SspI AATATT 1 cut(s) 276
SspMI CTAG 2 cut(s) 383, 501
TaaI ACNGT 2 cut(s) 31, 396
TaqI TCGA 1 cut(s) 17
TasI AATT 3 cut(s) 86, 446, 553
TatI WGTACW 2 cut(s) 126, 396
TauI GCSGC 1 cut(s) 154
TfiI GAWTC 2 cut(s) 190, 224
Tru1I TTAA 6 cut(s) 78, 108, 353, 449, 536, 556
Tru9I TTAA 6 cut(s) 78, 108, 353, 449, 536, 556
TscAI CASTG 1 cut(s) 267
TseI GCWGC 1 cut(s) 527
TspDTI ATGAA 3 cut(s) 79, 237, 425
TspRI CASTG 1 cut(s) 267
VpaK11BI GGWCC 1 cut(s) 343
VspI ATTAAT 1 cut(s) 78
XceI RCATGY 2 cut(s) 107, 135
XmnI GAANNNNTTC 1 cut(s) 51
XspI CTAG 2 cut(s) 383, 501
ZrmI AGTACT 1 cut(s) 398
Zsp2I ATGCAT 2 cut(s) 105, 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.