Rh3BG365600

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Forward (+)
45185503 .. 45188159
2657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG365600.1

Sequence Viewer

Length: 327 bp
ATGATCTCCGACGAGAGCTTGGAGCTAATTGCCAAGTCTTTCAAGAATTTCAAGCTCCTTGTGCTTTCGTCCTGTGAGGGATTCGGTACCGATGGCCTTGCCTCCATTGCGGCTAATTGCAGGTTCATCTCTCTGCTGCTTCTGAGTGTTGAGATTAATCCACAATTCATAACATTTACGCATGTTACTATGGAGTCCAATAAGTACACATGTGTTCGGGAAACAACTCCGCAGAATAGTATTGTGATTATTGATATGAGTGTGCTGAATCAACGCCGACTCTGCACTTATGAATCCAAACTCCCAAATCCTTGCTTTGAAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.

Protein Analysis

108

Amino Acids

12.19

Weight (kDa)

5.76

Isoelectric Point (pI)

29.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clathrin_propel PF01394 52 - 86 6.9e-07 Clathrin propeller repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 111
Acc65I GGTACC 1 cut(s) 86
AccB1I GGYRCC 1 cut(s) 86
AciI CCGC 2 cut(s) 110, 230
AcsI RAATTY 1 cut(s) 46
AfaI GTAC 2 cut(s) 88, 206
AflIII ACRYGT 1 cut(s) 209
AgsI TTSAA 3 cut(s) 43, 52, 320
AluBI AGCT 3 cut(s) 18, 25, 55
AluI AGCT 3 cut(s) 18, 25, 55
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 1 cut(s) 136
ApoI RAATTY 1 cut(s) 46
AseI ATTAAT 1 cut(s) 156
Asp718I GGTACC 1 cut(s) 86
BanI GGYRCC 1 cut(s) 86
BbvI GCAGC 1 cut(s) 123
BccI CCATC 1 cut(s) 86
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BfuAI ACCTGC 1 cut(s) 111
BisI GCNGC 2 cut(s) 111, 137
BlsI GCNGC 2 cut(s) 112, 138
BmiI GGNNCC 1 cut(s) 88
Bse3DI GCAATG 1 cut(s) 105
BseMI GCAATG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 134
BseXI GCAGC 1 cut(s) 123
BsgI GTGCAG 1 cut(s) 268
BshFI GGCC 1 cut(s) 96
BshNI GGYRCC 1 cut(s) 86
BsnI GGCC 1 cut(s) 96
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 2 cut(s) 110, 230
BspANI GGCC 1 cut(s) 96
BspCNI CTCAG 1 cut(s) 135
BspLI GGNNCC 1 cut(s) 88
BspMI ACCTGC 1 cut(s) 111
BspT107I GGYRCC 1 cut(s) 86
BsrDI GCAATG 1 cut(s) 105
BssMI GATC 1 cut(s) 3
BstDEI CTNAG 1 cut(s) 143
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 3 cut(s) 61, 107, 282
BstNSI RCATGY 2 cut(s) 185, 213
BstV1I GCAGC 1 cut(s) 123
BsuRI GGCC 1 cut(s) 96
BveI ACCTGC 1 cut(s) 111
Csp6I GTAC 2 cut(s) 87, 205
CviAII CATG 2 cut(s) 182, 210
CviJI RGCY 5 cut(s) 18, 25, 55, 96, 113
CviKI_1 RGCY 5 cut(s) 18, 25, 55, 96, 113
CviQI GTAC 2 cut(s) 87, 205
DdeI CTNAG 1 cut(s) 143
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
FaeI CATG 2 cut(s) 185, 213
FaiI YATR 6 cut(s) 170, 183, 191, 211, 257, 291
FatI CATG 2 cut(s) 181, 209
Fnu4HI GCNGC 2 cut(s) 111, 137
Fsp4HI GCNGC 2 cut(s) 111, 137
GluI GCNGC 2 cut(s) 111, 137
HaeIII GGCC 1 cut(s) 96
Hin1II CATG 2 cut(s) 185, 213
HinfI GANTC 5 cut(s) 81, 194, 268, 279, 293
Hpy166II GTNNAC 1 cut(s) 207
Hpy188I TCNGA 2 cut(s) 10, 144
Hpy188III TCNNGA 2 cut(s) 43, 218
Hpy8I GTNNAC 1 cut(s) 207
Hpy99I CGWCG 1 cut(s) 14
HpyCH4V TGCA 2 cut(s) 120, 285
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 107, 282
HpyF3I CTNAG 1 cut(s) 143
Hsp92II CATG 2 cut(s) 185, 213
KpnI GGTACC 1 cut(s) 90
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 2 cut(s) 22, 60
LpnPI CCDG 2 cut(s) 85, 106
Lsp1109I GCAGC 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 184
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MluCI AATT 4 cut(s) 27, 46, 115, 164
MlyI GAGTC 2 cut(s) 203, 273
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 2 cut(s) 70, 112
MseI TTAA 1 cut(s) 156
MwoI GCNNNNNNNGC 3 cut(s) 61, 107, 282
NdeII GATC 1 cut(s) 3
NlaIII CATG 2 cut(s) 185, 213
NlaIV GGNNCC 1 cut(s) 88
NspI RCATGY 2 cut(s) 185, 213
PciI ACATGT 1 cut(s) 209
PfeI GAWTC 3 cut(s) 81, 268, 293
PkrI GCNGC 2 cut(s) 112, 138
PleI GAGTC 2 cut(s) 202, 273
PpsI GAGTC 2 cut(s) 202, 273
PscI ACATGT 1 cut(s) 209
PshBI ATTAAT 1 cut(s) 156
PspN4I GGNNCC 1 cut(s) 88
RsaI GTAC 2 cut(s) 88, 206
RsaNI GTAC 2 cut(s) 87, 205
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 2 cut(s) 111, 137
Sau3AI GATC 1 cut(s) 3
SchI GAGTC 2 cut(s) 203, 273
SetI ASST 5 cut(s) 20, 27, 57, 125, 326
Sse9I AATT 4 cut(s) 27, 46, 115, 164
SsiI CCGC 2 cut(s) 110, 230
TasI AATT 4 cut(s) 27, 46, 115, 164
TatI WGTACW 1 cut(s) 204
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 3 cut(s) 81, 268, 293
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TseI GCWGC 1 cut(s) 136
TspDTI ATGAA 3 cut(s) 115, 157, 306
VspI ATTAAT 1 cut(s) 156
XapI RAATTY 1 cut(s) 46
XceI RCATGY 2 cut(s) 185, 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.