Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001768

Physical Location & Seq

Genomic Coordinates Reverse (-)

24786659 .. 24789527

Gene Structure 2869 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018045

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTCTTCACTCGCCTCGATCTACTCCACCGTCGAGTCGGACATTGAAGCTGTTCCTCAGCGACAGAGAGAAATGAGGAGCAAAAAGAACAGGAGACTCCGCTTCGAGTTGCTGTTAATTATGATGAAGGAAACAATACCGCAAAATAGTATTGTGATTATTGATATGAGTGTGCCGAATCAACGCCGACTCTGCACTTATGAATCCAAACTCCCAAATTCTTGCTTTGAAAGGGATCCACTGAATGTCCAAATATTCCTCAAAATGCATAGGTCTGATTATGCTAAAAGATGGCTGAAGGAAATGCAAAAGATTGATGAGGACCACACCTTAACTCAACTTGAAACAGCATGGCAAAATCTGTCTGTGTTACTGGAGGCATATCTCATCTTCCAAGATTTCTCTGAGAAGTCTCAGGATGCAGAGGATCCAAAAACTCTAGCCAACCTGGTCGTATGCTGTCTTCACCTTAGAAAACCACCTTCTCGTTTTGTCATCCAATCAAGACTTGCACATCCAGACCACGTCCTCGTCAAAGGTGCCTCAGCTGTAGAAGAGAGCTTTGACAGAGCTCTTCAATCAGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005798 GO:0005829 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0008150 GO:0012505 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coatomer_E

Protein Analysis

197

Amino Acids

22.79

Weight (kDa)

7.7

Isoelectric Point (pI)

64.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Coatomer_E	PF04733	77 - 139	1.5e-19	Coatomer epsilon subunit
Coatomer_E	PF04733	139 - 195	4.5e-12	Coatomer epsilon subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001768)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501101 RchiOBHm_Chr1g0337861 RchiOBHm_Chr3g0465841 RchiOBHm_Chr3g0478461 RchiOBHm_Chr4g0403301 RchiOBHm_Chr4g0426291 RchiOBHm_Chr5g0002501 RchiOBHm_Chr5g0047701 RchiOBHm_Chr5g0057331 RchiOBHm_Chr6g0289621 RchiOBHm_Chr6g0289631
rosa_laevigata	RLG00000014682 RLG00000018045
rosa_multiflora	Rmu_co8182516.1_g000001 Rmu_sc0000335.1_g000004 Rmu_sc0041332.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155570 Rroxscaffold_3G00238240
rosa_rugosa	Rorug04G0219900 Rorug04G0220000 Rorug04G0420300 Rorug04G0420400 Rorug04G0420500 Rorug04G0420600 Rorug05G0111700 Rorug05G0325900 Rorug05G0326000 Rorug06G0152100 Rorug06G0152200 Rorug06G0152300 Rorug07G0231200
rosa_samantha	Rh2AG305300 Rh3AG218400 Rh3BG144900 Rh3BG365600 Rh3CG146200 Rh3DG146000 Rh5AG097100 Rh5DG428000 Rh6AG164100 Rh6AG387400 Rh6BG079000 Rh6BG285500 Rh6BG475400 Rh6CG330000 Rh7AG293100 Rh7CG313100
rosa_wichuraiana	Rw6G033750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	539
AciI	CCGC	2 cut(s)	100, 140
AclWI	GGATC	4 cut(s)	230, 243, 422, 435
AcsI	RAATTY	1 cut(s)	217
AcuI	CTGAAG	1 cut(s)	317
AgsI	TTSAA	4 cut(s)	47, 230, 344, 578
AjiI	CACGTC	1 cut(s)	526
AjnI	CCWGG	1 cut(s)	447
AluBI	AGCT	4 cut(s)	50, 548, 561, 572
AluI	AGCT	4 cut(s)	50, 548, 561, 572
Alw21I	GWGCWC	1 cut(s)	574
Alw26I	GTCTC	2 cut(s)	88, 417
AlwI	GGATC	4 cut(s)	230, 243, 422, 435
ApoI	RAATTY	1 cut(s)	217
Asp700I	GAANNNNTTC	1 cut(s)	51
AspS9I	GGNCC	1 cut(s)	322
AsuHPI	GGTGA	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	322
BamHI	GGATCC	2 cut(s)	235, 427
BanI	GGYRCC	1 cut(s)	539
BanII	GRGCYC	1 cut(s)	574
BarI	GAAGNNNNNNTAC	2 cut(s)	447, 479
BbsI	GAAGAC	1 cut(s)	455
Bbv12I	GWGCWC	1 cut(s)	574
BbvCI	CCTCAGC	2 cut(s)	57, 544
BccI	CCATC	1 cut(s)	285
BciT130I	CCWGG	1 cut(s)	449
BcoDI	GTCTC	2 cut(s)	88, 417
BfaI	CTAG	1 cut(s)	440
BfmI	CTRYAG	1 cut(s)	549
Bme1390I	CCNGG	1 cut(s)	449
Bme18I	GGWCC	1 cut(s)	322
BmgBI	CACGTC	1 cut(s)	526
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	3 cut(s)	237, 429, 541
BmrFI	CCNGG	1 cut(s)	449
BmsI	GCATC	1 cut(s)	409
BpiI	GAAGAC	1 cut(s)	455
BpmI	CTGGAG	1 cut(s)	395
Bpu10I	CCTNAGC	2 cut(s)	57, 544
Bse1I	ACTGG	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	449
BseGI	GGATG	3 cut(s)	424, 495, 514
BseMII	CTCAG	4 cut(s)	71, 396, 428, 558
BseNI	ACTGG	1 cut(s)	378
BseRI	GAGGAG	1 cut(s)	91
BsgI	GTGCAG	1 cut(s)	178
BshNI	GGYRCC	1 cut(s)	539
BsiHKAI	GWGCWC	1 cut(s)	574
BsmAI	GTCTC	2 cut(s)	88, 417
Bsp1286I	GDGCHC	1 cut(s)	574
Bsp143I	GATC	3 cut(s)	18, 235, 427
BspACI	CCGC	2 cut(s)	100, 140
BspCNI	CTCAG	4 cut(s)	70, 397, 427, 557
BspLI	GGNNCC	3 cut(s)	237, 429, 541
BspPI	GGATC	4 cut(s)	230, 243, 422, 435
BspQI	GCTCTTC	1 cut(s)	579
BspT107I	GGYRCC	1 cut(s)	539
BsrI	ACTGG	1 cut(s)	378
BssMI	GATC	3 cut(s)	18, 235, 427
Bst2UI	CCWGG	1 cut(s)	449
Bst4CI	ACNGT	1 cut(s)	31
Bst6I	CTCTTC	2 cut(s)	549, 579
BstDEI	CTNAG	5 cut(s)	57, 405, 414, 470, 544
BstF5I	GGATG	3 cut(s)	424, 495, 514
BstKTI	GATC	3 cut(s)	21, 238, 430
BstMAI	GTCTC	2 cut(s)	88, 417
BstMBI	GATC	3 cut(s)	18, 235, 427
BstMWI	GCNNNNNNNGC	1 cut(s)	192
BstNI	CCWGG	1 cut(s)	449
BstSCI	CCNGG	1 cut(s)	447
BstSFI	CTRYAG	1 cut(s)	549
BstV2I	GAAGAC	1 cut(s)	455
BstX2I	RGATCY	2 cut(s)	235, 427
BstYI	RGATCY	2 cut(s)	235, 427
BtrI	CACGTC	1 cut(s)	526
BtsCI	GGATG	3 cut(s)	424, 495, 514
BtsIMutI	CAGTG	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	322
CsiI	ACCWGGT	1 cut(s)	447
CviAII	CATG	1 cut(s)	351
CviJI	RGCY	6 cut(s)	50, 295, 443, 548, 561, 572
CviKI_1	RGCY	6 cut(s)	50, 295, 443, 548, 561, 572
DdeI	CTNAG	5 cut(s)	57, 405, 414, 470, 544
DpnI	GATC	3 cut(s)	20, 237, 429
DpnII	GATC	3 cut(s)	18, 235, 427
Eam1104I	CTCTTC	2 cut(s)	549, 579
EarI	CTCTTC	2 cut(s)	549, 579
Ecl136II	GAGCTC	1 cut(s)	572
Eco24I	GRGCYC	1 cut(s)	574
Eco47I	GGWCC	1 cut(s)	322
Eco53kI	GAGCTC	1 cut(s)	572
Eco57I	CTGAAG	1 cut(s)	317
EcoICRI	GAGCTC	1 cut(s)	572
EcoRII	CCWGG	1 cut(s)	447
EcoT22I	ATGCAT	1 cut(s)	270
EcoT38I	GRGCYC	1 cut(s)	574
FaeI	CATG	1 cut(s)	354
FaiI	YATR	8 cut(s)	122, 167, 201, 270, 282, 352, 382, 457
FatI	CATG	1 cut(s)	350
FokI	GGATG	3 cut(s)	431, 482, 501
FriOI	GRGCYC	1 cut(s)	574
FspBI	CTAG	1 cut(s)	440
GsuI	CTGGAG	1 cut(s)	395
Hin1II	CATG	1 cut(s)	354
HinfI	GANTC	5 cut(s)	35, 96, 178, 189, 203
HphI	GGTGA	1 cut(s)	458
Hpy188I	TCNGA	3 cut(s)	40, 277, 406
Hpy188III	TCNNGA	3 cut(s)	416, 504, 518
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	3 cut(s)	121, 292, 492
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4IV	ACGT	1 cut(s)	525
HpyCH4V	TGCA	5 cut(s)	195, 268, 307, 422, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	192
HpyF3I	CTNAG	5 cut(s)	57, 405, 414, 470, 544
HpySE526I	ACGT	1 cut(s)	525
Hsp92II	CATG	1 cut(s)	354
Kzo9I	GATC	3 cut(s)	18, 235, 427
LguI	GCTCTTC	1 cut(s)	579
LmnI	GCTCC	1 cut(s)	78
LpnPI	CCDG	6 cut(s)	76, 359, 401, 434, 461, 531
LweI	GCATC	1 cut(s)	409
MabI	ACCWGGT	1 cut(s)	447
MaeI	CTAG	1 cut(s)	440
MaeII	ACGT	1 cut(s)	525
MaeIII	GTNAC	1 cut(s)	369
MalI	GATC	3 cut(s)	20, 237, 429
MboI	GATC	3 cut(s)	18, 235, 427
MboII	GAAGA	4 cut(s)	382, 455, 566, 566
MflI	RGATCY	2 cut(s)	235, 427
MhlI	GDGCHC	1 cut(s)	574
MluCI	AATT	2 cut(s)	117, 217
MlyI	GAGTC	3 cut(s)	44, 90, 183
MmeI	TCCRAC	1 cut(s)	18
MnlI	CCTC	9 cut(s)	25, 66, 69, 269, 313, 370, 418, 539, 553
Mph1103I	ATGCAT	1 cut(s)	270
MroXI	GAANNNNTTC	1 cut(s)	51
MseI	TTAA	2 cut(s)	116, 332
MspA1I	CMGCKG	1 cut(s)	548
MspR9I	CCNGG	1 cut(s)	449
MvaI	CCWGG	1 cut(s)	449
MwoI	GCNNNNNNNGC	1 cut(s)	192
NdeII	GATC	3 cut(s)	18, 235, 427
NlaIII	CATG	1 cut(s)	354
NlaIV	GGNNCC	3 cut(s)	237, 429, 541
NsiI	ATGCAT	1 cut(s)	270
PciSI	GCTCTTC	1 cut(s)	579
PdmI	GAANNNNTTC	1 cut(s)	51
PfeI	GAWTC	2 cut(s)	178, 203
PflFI	GACNNNGTC	1 cut(s)	524
PleI	GAGTC	3 cut(s)	43, 90, 183
PpsI	GAGTC	3 cut(s)	43, 90, 183
Psp124BI	GAGCTC	1 cut(s)	574
Psp6I	CCWGG	1 cut(s)	447
PspGI	CCWGG	1 cut(s)	447
PspN4I	GGNNCC	3 cut(s)	237, 429, 541
PspPI	GGNCC	1 cut(s)	322
PsuI	RGATCY	2 cut(s)	235, 427
PsyI	GACNNNGTC	1 cut(s)	524
PvuII	CAGCTG	1 cut(s)	548
SacI	GAGCTC	1 cut(s)	574
SapI	GCTCTTC	1 cut(s)	579
SaqAI	TTAA	2 cut(s)	116, 332
Sau3AI	GATC	3 cut(s)	18, 235, 427
Sau96I	GGNCC	1 cut(s)	322
SchI	GAGTC	3 cut(s)	44, 90, 183
ScrFI	CCNGG	1 cut(s)	449
SduI	GDGCHC	1 cut(s)	574
SexAI	ACCWGGT	1 cut(s)	447
SfaNI	GCATC	1 cut(s)	409
SfcI	CTRYAG	1 cut(s)	549
SinI	GGWCC	1 cut(s)	322
Sse9I	AATT	2 cut(s)	117, 217
SsiI	CCGC	2 cut(s)	100, 140
SspI	AATATT	1 cut(s)	255
SspMI	CTAG	1 cut(s)	440
SstI	GAGCTC	1 cut(s)	574
StyD4I	CCNGG	1 cut(s)	447
TaaI	ACNGT	1 cut(s)	31
TaiI	ACGT	1 cut(s)	528
TaqI	TCGA	3 cut(s)	17, 33, 105
TasI	AATT	2 cut(s)	117, 217
TfiI	GAWTC	2 cut(s)	178, 203
Tru1I	TTAA	2 cut(s)	116, 332
Tru9I	TTAA	2 cut(s)	116, 332
TscAI	CASTG	1 cut(s)	246
TspDTI	ATGAA	2 cut(s)	140, 216
TspRI	CASTG	1 cut(s)	246
Tth111I	GACNNNGTC	1 cut(s)	524
VpaK11BI	GGWCC	1 cut(s)	322
XapI	RAATTY	1 cut(s)	217
XmnI	GAANNNNTTC	1 cut(s)	51
XspI	CTAG	1 cut(s)	440
Zsp2I	ATGCAT	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.