Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002269

Physical Location & Seq

Genomic Coordinates Reverse (-)

53370433 .. 53372100

Gene Structure 1668 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39724

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGCTGACATGAACTGGATTATTGAAGAAGATATGGAAGGTGTTTCTACACAGGAGCAGTGGAAGGGGTCTATTTACAAACTTCCAGCCGGCATTGCAGACATAAACAAGAAGGCCTACAAGCCCCAGACAGTCTCCTTCGGCCCTTACCATTTCAATCATTCAAATCCGATGGAGAAGCACAAGCATCGTGTGCTGCTTCATTTCCTCAAAAGATGTGGAAAACCTGTTGAACTGTTTGCAGATGCACTTGCTGAAGTAGTGGAAGATTTGAAGGACTCATACAATCCTCTTGAACCAGTGACTGCTTCTCATATACTTGATGATTATGCTCCTACTGATCCTATCTTCAGCAAGCACTGGAAGTTTCATGTCATGCCCTTCATTAAACGCGACATGTTAATGCTCGAGAATCAGTTGCCAATGCTTGTTCTTGTCAAGCTGGTCACAGTTGAAACTAATAAAGCTAAGTTCTGCTGCTCCTGCACGGTACCCCGGAACATGGGCAAGTGTGTGCACGTATTGGACATGTACAGGAAGAGCCTGCTTCAGGAAGATCCCCACCAGAAAATAGTTTGCCACAGAGCGTCTGTGAATGGCAATGCGATCATCTGGTCTGCAACAGAGCTTCAAAGACATCCATGGGCTATTAGATTCAAGAAAAGCAAATCTTCAAGCCTCAAAGACATCTCATTCTCTTGGGGAATCCTGAAGCTCCCACTTATGGTTGTGGATGATTCAACCGAGTCCATGTTCTTGAATATGACAGCATTTGAGAGATTCCATGTTGGAGCAGGAAATGAGGTGACGTCTTACATATTCTTCATGGACAGCATCATAGACAATCACAGAGATGTTGGCCTCCTGCAATCAAAAGGCATCATCCACAACTTTATGGGAAGTGATGATGCCGTGGCTAAACTTTTGAACTCACTCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

313

Amino Acids

35.75

Weight (kDa)

7.25

Isoelectric Point (pI)

33.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	25 - 96	2.4e-16	Plant protein of unknown function
DUF247	PF03140	111 - 313	7.4e-50	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002269)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22070 FvH4_4g22070
malus_domestica	MD16G1130500.v1.1
prunus_persica	Prupe.1G210700_v2.0.a1
pyrus_communis	pycom16g11490
rosa_chinensis	RchiOBHm_Chr4g0427551 RchiOBHm_Chr4g0427561 RchiOBHm_Chr4g0428321 RchiOBHm_Chr4g0428331
rosa_laevigata	RLG00000007164 RLG00000007165 RLG00000007226 RLG00000007227
rosa_multiflora	Rmu_co8176162.1_g000001 Rmu_co8339473.1_g000001 Rmu_sc0007019.1_g000006 Rmu_sc0009627.1_g000005
rosa_roxburghii	Rroxscaffold_5G00369200 Rroxscaffold_5G00369220 Rroxscaffold_5G00369970
rosa_rugosa	Rorug04G0218500 Rorug04G0218600 Rorug04G0224700
rosa_samantha	Rh4AG275100 Rh4AG281300 Rh4AG281400 Rh4AG281500 Rh4BG280900 Rh4BG281000 Rh4BG286900 Rh4BG287000 Rh4BG287100 Rh4CG296200 Rh4CG302500 Rh4CG302600 Rh4CG302700 Rh4DG278300 Rh4DG284000 Rh4DG284100 Rh4DG284200
rosa_wichuraiana	Rw4G023850 Rw4G024430 Rw4G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	812
Acc65I	GGTACC	1 cut(s)	490
AccB1I	GGYRCC	1 cut(s)	490
AccII	CGCG	1 cut(s)	393
AclWI	GGATC	2 cut(s)	335, 551
AcuI	CTGAAG	4 cut(s)	276, 334, 533, 731
AcyI	GRCGYC	1 cut(s)	809
AfaI	GTAC	2 cut(s)	492, 533
AfiI	CCNNNNNNNGG	3 cut(s)	502, 550, 724
AflIII	ACRYGT	2 cut(s)	396, 528
AloI	GAACNNNNNNTCC	1 cut(s)	920
AluBI	AGCT	4 cut(s)	442, 467, 628, 715
AluI	AGCT	4 cut(s)	442, 467, 628, 715
Alw21I	GWGCWC	1 cut(s)	519
Alw26I	GTCTC	1 cut(s)	139
Alw44I	GTGCAC	1 cut(s)	515
AlwI	GGATC	2 cut(s)	335, 551
AlwNI	CAGNNNCTG	1 cut(s)	305
Ama87I	CYCGRG	1 cut(s)	407
AoxI	GGCC	3 cut(s)	114, 142, 859
ApaLI	GTGCAC	1 cut(s)	515
ApeKI	GCWGC	2 cut(s)	196, 477
Asp718I	GGTACC	1 cut(s)	490
AspS9I	GGNCC	1 cut(s)	143
AsuC2I	CCSGG	1 cut(s)	496
AsuHPI	GGTGA	1 cut(s)	817
AvaI	CYCGRG	1 cut(s)	407
BaeGI	GKGCMC	1 cut(s)	519
BanI	GGYRCC	1 cut(s)	490
BarI	GAAGNNNNNNTAC	2 cut(s)	266, 298
Bbv12I	GWGCWC	1 cut(s)	519
BbvI	GCAGC	2 cut(s)	183, 464
BccI	CCATC	1 cut(s)	166
BceAI	ACGGC	1 cut(s)	896
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BcnI	CCSGG	1 cut(s)	496
BcoDI	GTCTC	1 cut(s)	139
BfaI	CTAG	1 cut(s)	940
BisI	GCNGC	2 cut(s)	197, 478
BlsI	GCNGC	2 cut(s)	198, 479
Bme1390I	CCNGG	1 cut(s)	496
BmeT110I	CYCGRG	1 cut(s)	407
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	1 cut(s)	492
BmrFI	CCNGG	1 cut(s)	496
BmsI	GCATC	5 cut(s)	196, 235, 843, 888, 898
BpuMI	CCSGG	1 cut(s)	496
BsaAI	YACGTR	1 cut(s)	520
BsaHI	GRCGYC	1 cut(s)	809
BsaJI	CCNNGG	3 cut(s)	494, 641, 912
BsaXI	ACNNNNNCTCC	1 cut(s)	920
Bsc4I	CCNNNNNNNGG	3 cut(s)	502, 550, 724
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	3 cut(s)	20, 299, 365
Bse3DI	GCAATG	2 cut(s)	93, 607
BseDI	CCNNGG	3 cut(s)	494, 641, 912
BseGI	GGATG	3 cut(s)	637, 739, 882
BseLI	CCNNNNNNNGG	3 cut(s)	502, 550, 724
BseMI	GCAATG	2 cut(s)	93, 607
BseNI	ACTGG	3 cut(s)	20, 299, 365
BseSI	GKGCMC	1 cut(s)	519
BseXI	GCAGC	2 cut(s)	183, 464
BsgI	GTGCAG	1 cut(s)	469
Bsh1236I	CGCG	1 cut(s)	393
BshFI	GGCC	3 cut(s)	116, 144, 861
BshNI	GGYRCC	1 cut(s)	490
BsiHKAI	GWGCWC	1 cut(s)	519
BsiHKCI	CYCGRG	1 cut(s)	407
BsiSI	CCGG	2 cut(s)	90, 496
BslI	CCNNNNNNNGG	3 cut(s)	502, 550, 724
BsmAI	GTCTC	1 cut(s)	139
BsnI	GGCC	3 cut(s)	116, 144, 861
BsoBI	CYCGRG	1 cut(s)	407
Bsp1286I	GDGCHC	1 cut(s)	519
Bsp1407I	TGTACA	1 cut(s)	531
Bsp143I	GATC	3 cut(s)	340, 556, 606
Bsp19I	CCATGG	1 cut(s)	641
BspANI	GGCC	3 cut(s)	116, 144, 861
BspFNI	CGCG	1 cut(s)	393
BspLI	GGNNCC	1 cut(s)	492
BspPI	GGATC	2 cut(s)	335, 551
BspQI	GCTCTTC	1 cut(s)	533
BspT107I	GGYRCC	1 cut(s)	490
BsrDI	GCAATG	2 cut(s)	93, 607
BsrFI	RCCGGY	1 cut(s)	89
BsrGI	TGTACA	1 cut(s)	531
BsrI	ACTGG	3 cut(s)	20, 299, 365
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	3 cut(s)	494, 641, 912
BssMI	GATC	3 cut(s)	340, 556, 606
BssNI	GRCGYC	1 cut(s)	809
BssT1I	CCWWGG	1 cut(s)	641
Bst4CI	ACNGT	4 cut(s)	133, 237, 451, 490
Bst6I	CTCTTC	1 cut(s)	533
BstACI	GRCGYC	1 cut(s)	809
BstAPI	GCANNNNNTGC	1 cut(s)	193
BstAUI	TGTACA	1 cut(s)	531
BstBAI	YACGTR	1 cut(s)	520
BstC8I	GCNNGC	3 cut(s)	91, 356, 545
BstDEI	CTNAG	1 cut(s)	468
BstDSI	CCRYGG	2 cut(s)	641, 912
BstENI	CCTNNNNNAGG	1 cut(s)	548
BstF5I	GGATG	3 cut(s)	637, 739, 882
BstFNI	CGCG	1 cut(s)	393
BstKTI	GATC	3 cut(s)	343, 559, 609
BstMAI	GTCTC	1 cut(s)	139
BstMBI	GATC	3 cut(s)	340, 556, 606
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 193, 483
BstNSI	RCATGY	2 cut(s)	400, 532
BstSCI	CCNGG	1 cut(s)	494
BstSLI	GKGCMC	1 cut(s)	519
BstUI	CGCG	1 cut(s)	393
BstV1I	GCAGC	2 cut(s)	183, 464
BstX2I	RGATCY	1 cut(s)	556
BstYI	RGATCY	1 cut(s)	556
BsuRI	GGCC	3 cut(s)	116, 144, 861
BtgI	CCRYGG	2 cut(s)	641, 912
BtsCI	GGATG	3 cut(s)	637, 739, 882
BtsI	GCAGTG	1 cut(s)	65
BtsIMutI	CAGTG	3 cut(s)	65, 306, 358
Cac8I	GCNNGC	3 cut(s)	91, 356, 545
CaiI	CAGNNNCTG	1 cut(s)	305
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	143
CseI	GACGC	1 cut(s)	576
Csp6I	GTAC	2 cut(s)	491, 532
CspCI	CAANNNNNGTGG	2 cut(s)	199, 234
CviQI	GTAC	2 cut(s)	491, 532
DdeI	CTNAG	1 cut(s)	468
DpnI	GATC	3 cut(s)	342, 558, 608
DpnII	GATC	3 cut(s)	340, 556, 606
Eam1104I	CTCTTC	1 cut(s)	533
EarI	CTCTTC	1 cut(s)	533
Eco130I	CCWWGG	1 cut(s)	641
Eco147I	AGGCCT	1 cut(s)	116
Eco57I	CTGAAG	4 cut(s)	276, 334, 533, 731
Eco88I	CYCGRG	1 cut(s)	407
EcoNI	CCTNNNNNAGG	1 cut(s)	548
EcoT14I	CCWWGG	1 cut(s)	641
ErhI	CCWWGG	1 cut(s)	641
FalI	AAGNNNNNCTT	2 cut(s)	655, 687
Fnu4HI	GCNGC	2 cut(s)	197, 478
FokI	GGATG	3 cut(s)	624, 746, 869
Fsp4HI	GCNGC	2 cut(s)	197, 478
FspBI	CTAG	1 cut(s)	940
GluI	GCNGC	2 cut(s)	197, 478
HaeIII	GGCC	3 cut(s)	116, 144, 861
HapII	CCGG	2 cut(s)	90, 496
HgaI	GACGC	1 cut(s)	576
Hin1I	GRCGYC	1 cut(s)	809
HinfI	GANTC	7 cut(s)	278, 412, 654, 705, 737, 746, 780
HpaII	CCGG	2 cut(s)	90, 496
HphI	GGTGA	1 cut(s)	817
Hpy166II	GTNNAC	1 cut(s)	517
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	6 cut(s)	293, 409, 551, 658, 709, 757
Hpy8I	GTNNAC	1 cut(s)	517
HpyAV	CCTTC	6 cut(s)	32, 58, 106, 148, 268, 391
HpyCH4III	ACNGT	4 cut(s)	133, 237, 451, 490
HpyCH4IV	ACGT	2 cut(s)	519, 809
HpyCH4V	TGCA	7 cut(s)	98, 242, 248, 486, 517, 620, 868
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 193, 483
HpyF3I	CTNAG	1 cut(s)	468
HpySE526I	ACGT	2 cut(s)	519, 809
Hsp92I	GRCGYC	1 cut(s)	809
KpnI	GGTACC	1 cut(s)	494
KroI	GCCGGC	1 cut(s)	89
KroNI	GCCGGC	1 cut(s)	91
Kzo9I	GATC	3 cut(s)	340, 556, 606
LguI	GCTCTTC	1 cut(s)	533
LmnI	GCTCC	5 cut(s)	55, 337, 485, 720, 791
Lsp1109I	GCAGC	2 cut(s)	183, 464
LweI	GCATC	5 cut(s)	196, 235, 843, 888, 898
MaeI	CTAG	1 cut(s)	940
MaeII	ACGT	2 cut(s)	519, 809
MaeIII	GTNAC	3 cut(s)	301, 445, 805
MalI	GATC	3 cut(s)	342, 558, 608
MboI	GATC	3 cut(s)	340, 556, 606
MboII	GAAGA	8 cut(s)	38, 41, 278, 340, 550, 566, 663, 814
MflI	RGATCY	1 cut(s)	556
MhlI	GDGCHC	1 cut(s)	519
MlyI	GAGTC	2 cut(s)	272, 755
MmeI	TCCRAC	1 cut(s)	769
MnlI	CCTC	5 cut(s)	218, 300, 689, 796, 872
MroNI	GCCGGC	1 cut(s)	89
MseI	TTAA	2 cut(s)	387, 401
MslI	CAYNNNNRTG	2 cut(s)	401, 852
MspI	CCGG	2 cut(s)	90, 496
MspR9I	CCNGG	1 cut(s)	496
MvnI	CGCG	1 cut(s)	393
MwoI	GCNNNNNNNGC	3 cut(s)	95, 193, 483
NaeI	GCCGGC	1 cut(s)	91
NciI	CCSGG	1 cut(s)	496
NcoI	CCATGG	1 cut(s)	641
NdeII	GATC	3 cut(s)	340, 556, 606
NgoMIV	GCCGGC	1 cut(s)	89
NlaIV	GGNNCC	1 cut(s)	492
NmuCI	GTSAC	3 cut(s)	301, 445, 805
NspI	RCATGY	2 cut(s)	400, 532
PaeR7I	CTCGAG	1 cut(s)	407
PceI	AGGCCT	1 cut(s)	116
PciI	ACATGT	2 cut(s)	396, 528
PciSI	GCTCTTC	1 cut(s)	533
PdiI	GCCGGC	1 cut(s)	91
PfeI	GAWTC	5 cut(s)	412, 654, 705, 737, 780
PkrI	GCNGC	2 cut(s)	198, 479
PleI	GAGTC	2 cut(s)	272, 754
PpsI	GAGTC	2 cut(s)	272, 754
Ppu21I	YACGTR	1 cut(s)	520
PscI	ACATGT	2 cut(s)	396, 528
PspN4I	GGNNCC	1 cut(s)	492
PspPI	GGNCC	1 cut(s)	143
PstNI	CAGNNNCTG	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	556
RsaI	GTAC	2 cut(s)	492, 533
RsaNI	GTAC	2 cut(s)	491, 532
RseI	CAYNNNNRTG	2 cut(s)	401, 852
SapI	GCTCTTC	1 cut(s)	533
SaqAI	TTAA	2 cut(s)	387, 401
SatI	GCNGC	2 cut(s)	197, 478
Sau3AI	GATC	3 cut(s)	340, 556, 606
Sau96I	GGNCC	1 cut(s)	143
SchI	GAGTC	2 cut(s)	272, 755
ScrFI	CCNGG	1 cut(s)	496
SduI	GDGCHC	1 cut(s)	519
SetI	ASST	9 cut(s)	43, 229, 444, 469, 522, 630, 717, 807, 812
SfaNI	GCATC	5 cut(s)	196, 235, 843, 888, 898
Sfr274I	CTCGAG	1 cut(s)	407
SlaI	CTCGAG	1 cut(s)	407
SmiMI	CAYNNNNRTG	2 cut(s)	401, 852
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
SseBI	AGGCCT	1 cut(s)	116
SspMI	CTAG	1 cut(s)	940
StuI	AGGCCT	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	494
StyI	CCWWGG	1 cut(s)	641
TaaI	ACNGT	4 cut(s)	133, 237, 451, 490
TaiI	ACGT	2 cut(s)	522, 812
TaqI	TCGA	1 cut(s)	408
TatI	WGTACW	1 cut(s)	531
TfiI	GAWTC	5 cut(s)	412, 654, 705, 737, 780
Tru1I	TTAA	2 cut(s)	387, 401
Tru9I	TTAA	2 cut(s)	387, 401
TscAI	CASTG	3 cut(s)	65, 306, 365
TseFI	GTSAC	3 cut(s)	301, 445, 805
TseI	GCWGC	2 cut(s)	196, 477
Tsp45I	GTSAC	3 cut(s)	301, 445, 805
TspDTI	ATGAA	5 cut(s)	26, 191, 359, 373, 814
TspRI	CASTG	3 cut(s)	65, 306, 365
VneI	GTGCAC	1 cut(s)	515
XagI	CCTNNNNNAGG	1 cut(s)	548
XceI	RCATGY	2 cut(s)	400, 532
XhoI	CTCGAG	1 cut(s)	407
XspI	CTAG	1 cut(s)	940
ZraI	GACGTC	1 cut(s)	810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.