RLG00000007226

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0002269
Physical Location & Seq
Reverse (-)
14748423 .. 14750201
1779 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007226

Sequence Viewer

Length: 1095 bp
ATGGCTGGCACCGGATGGATTATTCAAGTTAATGAAGATCTCAAGAACATGGAAGGTCTTTCAACAGAGAAGCATCACTGGAATAAGGGGTCAATATACAAATTACCAGCCAGCCTCACAGACATGAACAAGAAGGCCTACAAGCCTCAAACAGTCTCCTTCGGGCCTTACCATTATGATCCTTCAAATCCAATGGAGGAGCACAAGCACCGCGCGCTGCTTCATTTCCTCAAAAGTTGTGGAAAGTCTGTTGAGTTGTTTGTAGATGCATTGGCTGAAGTAGAGAATGATTTGAAGGACTCATATACTCTGCTTCATTCTATGCCGAAAGAAGTCACAGACATATTCCTGCAACTAATGATTTTAGATGGCTGTTTCATGCTGGAAATCCTAAGGACTGCTGCTCATGTACTGGACGATTATGCTCCTAATGATCCCATCTTCGGCAATCATGGTAGGCTCCATGTCATGCCATACATCAAGCGTGACATGTTAATGCTTGAGAATCAGTTGCCAATGCTTGTTCTTGAAAAGCTGGTGGTAGTTGAGCATGATAAAGCTAAGGATGAAGGGTTTGTGACCAAGCTCATACTCAAGTTCCTCTGCTCCTGCAATGTTTCTCCAAACATGGGAAAGTGTGTGCATGTATTGGACGTGTACAGGAAGAGTCTGCTTCAGCATGAGCCTGATCACAAATATATTGGCCACAATATAAGGTTAATGGAGCGTGACGATGAGATCATCCGGTCTGCAACGGCGCTCAATGAAGCAGGAATCAGGTTCAAGAAAAGTGCAACTACAAGCCTCAAAGACATCACATTCGCTGGGGGAGTGCTGAGGCTCCCTGTTGTTCTTGTGGATGACACCACCGAGTCCATGTTCTTGAATCTGATGGCATTTGAAAGATTCCATGTAGGAGGAGGAAATGAGGTGACTTCTTATTTAATCTTCATGGACAACATCATAGACAATGCTAGGGATGTCTCCCTCTTACACTCGAAAGGGATCATCCATAATAGTCTAGGGAGTGACAAAGCAGTGGCTAATCTGTTCAATTCACTCTCTAAAGATGTGACACAAGACCCGGATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

365

Amino Acids

41.15

Weight (kDa)

5.97

Isoelectric Point (pI)

32.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 32 - 361 4.4e-96 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 8
AccII CGCG 2 cut(s) 213, 215
AciI CCGC 1 cut(s) 211
AclWI GGATC 3 cut(s) 173, 428, 1013
AcoI YGGCCR 1 cut(s) 703
AcuI CTGAAG 2 cut(s) 297, 659
AfaI GTAC 2 cut(s) 411, 659
AfiI CCNNNNNNNGG 2 cut(s) 443, 629
AflIII ACRYGT 2 cut(s) 489, 654
AgsI TTSAA 9 cut(s) 26, 63, 186, 295, 530, 784, 886, 902, 1054
AjiI CACGTC 1 cut(s) 655
AluBI AGCT 3 cut(s) 535, 560, 586
AluI AGCT 3 cut(s) 535, 560, 586
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 2 cut(s) 160, 988
AlwI GGATC 3 cut(s) 173, 428, 1013
AoxI GGCC 3 cut(s) 135, 164, 703
ApeKI GCWGC 2 cut(s) 217, 401
ArsI GACNNNNNNTTYG 2 cut(s) 803, 835
AspLEI GCGC 3 cut(s) 215, 217, 760
AspS9I GGNCC 1 cut(s) 164
AsuC2I CCSGG 1 cut(s) 1085
AsuHPI GGTGA 1 cut(s) 943
AxyI CCTNAGG 1 cut(s) 392
BalI TGGCCA 1 cut(s) 705
BanI GGYRCC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 204
BbvCI CCTCAGC 1 cut(s) 836
BbvI GCAGC 2 cut(s) 204, 388
BccI CCATC 4 cut(s) 9, 362, 446, 886
BceAI ACGGC 1 cut(s) 771
BclI TGATCA 1 cut(s) 688
BcnI CCSGG 1 cut(s) 1085
BcoDI GTCTC 2 cut(s) 160, 988
BfaI CTAG 2 cut(s) 975, 1022
BfoI RGCGCY 1 cut(s) 761
BglII AGATCT 1 cut(s) 37
BisI GCNGC 2 cut(s) 218, 402
BlsI GCNGC 2 cut(s) 219, 403
Bme1390I CCNGG 1 cut(s) 1085
BmgBI CACGTC 1 cut(s) 655
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 3 cut(s) 10, 461, 842
BmrFI CCNGG 1 cut(s) 1085
BmsI GCATC 2 cut(s) 82, 256
Bpu10I CCTNAGC 2 cut(s) 561, 836
BpuEI CTTGAG 3 cut(s) 26, 521, 578
BpuMI CCSGG 1 cut(s) 1085
BsaWI WCCGGW 2 cut(s) 11, 744
Bsc4I CCNNNNNNNGG 2 cut(s) 443, 629
Bse1I ACTGG 2 cut(s) 83, 417
Bse21I CCTNAGG 1 cut(s) 392
Bse3DI GCAATG 1 cut(s) 619
BseGI GGATG 6 cut(s) 20, 571, 741, 865, 985, 1008
BseLI CCNNNNNNNGG 2 cut(s) 443, 629
BseMI GCAATG 1 cut(s) 619
BseMII CTCAG 1 cut(s) 827
BseNI ACTGG 2 cut(s) 83, 417
BsePI GCGCGC 1 cut(s) 213
BseRI GAGGAG 2 cut(s) 212, 933
BseXI GCAGC 2 cut(s) 204, 388
BseYI CCCAGC 1 cut(s) 824
Bsh1236I CGCG 2 cut(s) 213, 215
BshFI GGCC 3 cut(s) 137, 166, 705
BshNI GGYRCC 1 cut(s) 8
BsiHKAI GWGCWC 1 cut(s) 204
BsiSI CCGG 3 cut(s) 12, 745, 1085
BslI CCNNNNNNNGG 2 cut(s) 443, 629
BsmAI GTCTC 2 cut(s) 160, 988
BsnI GGCC 3 cut(s) 137, 166, 705
Bsp1286I GDGCHC 1 cut(s) 204
Bsp1407I TGTACA 1 cut(s) 657
Bsp143I GATC 6 cut(s) 37, 178, 433, 688, 738, 1005
BspACI CCGC 1 cut(s) 211
BspANI GGCC 3 cut(s) 137, 166, 705
BspCNI CTCAG 1 cut(s) 828
BspFNI CGCG 2 cut(s) 213, 215
BspLI GGNNCC 3 cut(s) 10, 461, 842
BspPI GGATC 3 cut(s) 173, 428, 1013
BspT107I GGYRCC 1 cut(s) 8
BsrDI GCAATG 1 cut(s) 619
BsrGI TGTACA 1 cut(s) 657
BsrI ACTGG 2 cut(s) 83, 417
BssHII GCGCGC 1 cut(s) 213
BssMI GATC 6 cut(s) 37, 178, 433, 688, 738, 1005
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 659
BstAUI TGTACA 1 cut(s) 657
BstC8I GCNNGC 3 cut(s) 7, 112, 215
BstDEI CTNAG 3 cut(s) 392, 561, 836
BstF5I GGATG 6 cut(s) 20, 571, 741, 865, 985, 1008
BstFNI CGCG 2 cut(s) 213, 215
BstH2I RGCGCY 1 cut(s) 761
BstHHI GCGC 3 cut(s) 215, 217, 760
BstKTI GATC 6 cut(s) 40, 181, 436, 691, 741, 1008
BstMAI GTCTC 2 cut(s) 160, 988
BstMBI GATC 6 cut(s) 37, 178, 433, 688, 738, 1005
BstMWI GCNNNNNNNGC 1 cut(s) 214
BstNSI RCATGY 2 cut(s) 493, 647
BstSCI CCNGG 1 cut(s) 1083
BstUI CGCG 2 cut(s) 213, 215
BstV1I GCAGC 2 cut(s) 204, 388
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
Bsu36I CCTNAGG 1 cut(s) 392
BsuRI GGCC 3 cut(s) 137, 166, 705
BtrI CACGTC 1 cut(s) 655
BtsCI GGATG 6 cut(s) 20, 571, 741, 865, 985, 1008
BtsI GCAGTG 1 cut(s) 1044
BtsIMutI CAGTG 2 cut(s) 76, 1044
Cac8I GCNNGC 3 cut(s) 7, 112, 215
CfoI GCGC 3 cut(s) 215, 217, 760
Cfr13I GGNCC 1 cut(s) 164
Csp6I GTAC 2 cut(s) 410, 658
CspCI CAANNNNNGTGG 2 cut(s) 220, 255
CviQI GTAC 2 cut(s) 410, 658
DdeI CTNAG 3 cut(s) 392, 561, 836
DpnI GATC 6 cut(s) 39, 180, 435, 690, 740, 1007
DpnII GATC 6 cut(s) 37, 178, 433, 688, 738, 1005
EaeI YGGCCR 1 cut(s) 703
Eam1104I CTCTTC 1 cut(s) 659
EarI CTCTTC 1 cut(s) 659
Eco147I AGGCCT 1 cut(s) 137
Eco57I CTGAAG 2 cut(s) 297, 659
Eco81I CCTNAGG 1 cut(s) 392
EcoT22I ATGCAT 1 cut(s) 271
FbaI TGATCA 1 cut(s) 688
Fnu4HI GCNGC 2 cut(s) 218, 402
FokI GGATG 6 cut(s) 27, 578, 728, 872, 992, 995
Fsp4HI GCNGC 2 cut(s) 218, 402
FspBI CTAG 2 cut(s) 975, 1022
GlaI GCGC 3 cut(s) 214, 216, 759
GluI GCNGC 2 cut(s) 218, 402
GsaI CCCAGC 1 cut(s) 828
HaeII RGCGCY 1 cut(s) 761
HaeIII GGCC 3 cut(s) 137, 166, 705
HapII CCGG 3 cut(s) 12, 745, 1085
HhaI GCGC 3 cut(s) 215, 217, 760
Hin6I GCGC 3 cut(s) 213, 215, 758
HinP1I GCGC 3 cut(s) 213, 215, 758
HinfI GANTC 7 cut(s) 299, 505, 667, 774, 872, 886, 906
HpaII CCGG 3 cut(s) 12, 745, 1085
HphI GGTGA 1 cut(s) 943
Hpy166II GTNNAC 1 cut(s) 658
Hpy188I TCNGA 1 cut(s) 891
Hpy188III TCNNGA 4 cut(s) 43, 527, 784, 883
Hpy8I GTNNAC 1 cut(s) 658
HpyAV CCTTC 6 cut(s) 47, 127, 169, 192, 289, 563
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4IV ACGT 1 cut(s) 654
HpyCH4V TGCA 6 cut(s) 269, 352, 612, 643, 752, 794
HpyF10VI GCNNNNNNNGC 1 cut(s) 214
HpyF3I CTNAG 3 cut(s) 392, 561, 836
HpySE526I ACGT 1 cut(s) 654
HspAI GCGC 3 cut(s) 213, 215, 758
Ksp22I TGATCA 1 cut(s) 688
Kzo9I GATC 6 cut(s) 37, 178, 433, 688, 738, 1005
LmnI GCTCC 6 cut(s) 199, 430, 465, 611, 724, 846
Lsp1109I GCAGC 2 cut(s) 204, 388
LweI GCATC 2 cut(s) 82, 256
MaeI CTAG 2 cut(s) 975, 1022
MaeII ACGT 1 cut(s) 654
MaeIII GTNAC 7 cut(s) 334, 485, 577, 728, 931, 1028, 1072
MalI GATC 6 cut(s) 39, 180, 435, 690, 740, 1007
MboI GATC 6 cut(s) 37, 178, 433, 688, 738, 1005
MboII GAAGA 4 cut(s) 47, 433, 676, 940
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 204
MlsI TGGCCA 1 cut(s) 705
MluCI AATT 2 cut(s) 101, 1054
MluNI TGGCCA 1 cut(s) 705
MlyI GAGTC 3 cut(s) 293, 676, 881
Mox20I TGGCCA 1 cut(s) 705
Mph1103I ATGCAT 1 cut(s) 271
MscI TGGCCA 1 cut(s) 705
MseI TTAA 4 cut(s) 30, 494, 719, 944
MslI CAYNNNNRTG 2 cut(s) 122, 494
Msp20I TGGCCA 1 cut(s) 705
MspI CCGG 3 cut(s) 12, 745, 1085
MspR9I CCNGG 1 cut(s) 1085
MvnI CGCG 2 cut(s) 213, 215
MwoI GCNNNNNNNGC 1 cut(s) 214
NciI CCSGG 1 cut(s) 1085
NdeII GATC 6 cut(s) 37, 178, 433, 688, 738, 1005
NlaIV GGNNCC 3 cut(s) 10, 461, 842
NmuCI GTSAC 7 cut(s) 334, 485, 577, 728, 931, 1028, 1072
NsiI ATGCAT 1 cut(s) 271
NspI RCATGY 2 cut(s) 493, 647
PauI GCGCGC 1 cut(s) 213
PceI AGGCCT 1 cut(s) 137
PciI ACATGT 1 cut(s) 489
PfeI GAWTC 4 cut(s) 505, 774, 886, 906
PkrI GCNGC 2 cut(s) 219, 403
PleI GAGTC 3 cut(s) 293, 675, 880
PpsI GAGTC 3 cut(s) 293, 675, 880
PscI ACATGT 1 cut(s) 489
PspFI CCCAGC 1 cut(s) 824
PspN4I GGNNCC 3 cut(s) 10, 461, 842
PspPI GGNCC 1 cut(s) 164
PsuI RGATCY 1 cut(s) 37
PteI GCGCGC 1 cut(s) 213
RsaI GTAC 2 cut(s) 411, 659
RsaNI GTAC 2 cut(s) 410, 658
RseI CAYNNNNRTG 2 cut(s) 122, 494
SaqAI TTAA 4 cut(s) 30, 494, 719, 944
SatI GCNGC 2 cut(s) 218, 402
Sau3AI GATC 6 cut(s) 37, 178, 433, 688, 738, 1005
Sau96I GGNCC 1 cut(s) 164
SchI GAGTC 3 cut(s) 293, 676, 881
ScrFI CCNGG 1 cut(s) 1085
SduI GDGCHC 1 cut(s) 204
SetI ASST 8 cut(s) 58, 537, 562, 588, 657, 719, 782, 933
SfaNI GCATC 2 cut(s) 82, 256
SmiMI CAYNNNNRTG 2 cut(s) 122, 494
SmlI CTYRAG 3 cut(s) 41, 500, 593
SmoI CTYRAG 3 cut(s) 41, 500, 593
Sse9I AATT 2 cut(s) 101, 1054
SseBI AGGCCT 1 cut(s) 137
SsiI CCGC 1 cut(s) 211
SspMI CTAG 2 cut(s) 975, 1022
StuI AGGCCT 1 cut(s) 137
StyD4I CCNGG 1 cut(s) 1083
TaaI ACNGT 1 cut(s) 154
TaiI ACGT 1 cut(s) 657
TaqI TCGA 1 cut(s) 998
TasI AATT 2 cut(s) 101, 1054
TatI WGTACW 2 cut(s) 409, 657
TfiI GAWTC 4 cut(s) 505, 774, 886, 906
Tru1I TTAA 4 cut(s) 30, 494, 719, 944
Tru9I TTAA 4 cut(s) 30, 494, 719, 944
TscAI CASTG 2 cut(s) 83, 1044
TseFI GTSAC 7 cut(s) 334, 485, 577, 728, 931, 1028, 1072
TseI GCWGC 2 cut(s) 217, 401
Tsp45I GTSAC 7 cut(s) 334, 485, 577, 728, 931, 1028, 1072
TspDTI ATGAA 8 cut(s) 48, 140, 212, 305, 367, 582, 780, 940
TspRI CASTG 2 cut(s) 83, 1044
XceI RCATGY 2 cut(s) 493, 647
XspI CTAG 2 cut(s) 975, 1022
Zsp2I ATGCAT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.