Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007019.1

Orthogroup ID

OG0002269

Physical Location & Seq

Genomic Coordinates Reverse (-)

35663 .. 36448

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007019.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atgggcaagtgtgtgcatgtgttggacatgtacaggaagagtctgcttcagcatgagcctaatcccaaatttattcgcaaaataaggccaagtgagcatgacgatgagatcatctggtccgcaatagcgctcaatgaagcaggaatcaggttcaagaaaagtgcaactacaagcctcaaagacatcacattcgcccggggagtgttgaggctccctgttgttgttgtggatgacaccaccgagtccatgttcttgaatctgatggcgtttgaaagattccatgtaggagcaggaaatgaggtgacatcttatttactcttcatggacaacatcatagacaatgctatggatgttgccctcttacactcgaaagggatcatccagaatgctttggggagtgacaaagcagtggctaatctcttcaattcactgtctaaggatgtgacacaggacccggatagcagccttcaaattgtgcataagagggtgtatcactactgcagaaagccgtggaatgagtggcgcgccaatcttattcacacttacttccgaaatccatgggctattatctctttcattgctggtgtcttcctctttgtgttcactatagctcagactggatatgccatatatccctattaccatccactaaatgattcttctccttccactgtcattctcgttccggctcctcctccaaaacattcatcctccgactccacctccccatcgacacttgtgatttctttcatccttgttaccatggtatgcatgctgaccaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

261

Amino Acids

29.43

Weight (kDa)

7.78

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002269)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22070 FvH4_4g22070
malus_domestica	MD16G1130500.v1.1
prunus_persica	Prupe.1G210700_v2.0.a1
pyrus_communis	pycom16g11490
rosa_chinensis	RchiOBHm_Chr4g0427551 RchiOBHm_Chr4g0427561 RchiOBHm_Chr4g0428321 RchiOBHm_Chr4g0428331
rosa_laevigata	RLG00000007164 RLG00000007165 RLG00000007226 RLG00000007227
rosa_multiflora	Rmu_co8176162.1_g000001 Rmu_co8339473.1_g000001 Rmu_sc0007019.1_g000006 Rmu_sc0009627.1_g000005
rosa_roxburghii	Rroxscaffold_5G00369200 Rroxscaffold_5G00369220 Rroxscaffold_5G00369970
rosa_rugosa	Rorug04G0218500 Rorug04G0218600 Rorug04G0224700
rosa_samantha	Rh4AG275100 Rh4AG281300 Rh4AG281400 Rh4AG281500 Rh4BG280900 Rh4BG281000 Rh4BG286900 Rh4BG287000 Rh4BG287100 Rh4CG296200 Rh4CG302500 Rh4CG302600 Rh4CG302700 Rh4DG278300 Rh4DG284000 Rh4DG284100 Rh4DG284200
rosa_wichuraiana	Rw4G023850 Rw4G024430 Rw4G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	525
AciI	CCGC	1 cut(s)	120
AclWI	GGATC	1 cut(s)	383
AcsI	RAATTY	1 cut(s)	68
AcuI	CTGAAG	1 cut(s)	32
AfaI	GTAC	1 cut(s)	32
AfeI	AGCGCT	1 cut(s)	129
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	5 cut(s)	154, 256, 272, 424, 470
AluBI	AGCT	1 cut(s)	611
AluI	AGCT	1 cut(s)	611
AlwI	GGATC	1 cut(s)	383
Ama87I	CYCGRG	1 cut(s)	195
Aor51HI	AGCGCT	1 cut(s)	129
AoxI	GGCC	1 cut(s)	86
ApeKI	GCWGC	1 cut(s)	462
ApoI	RAATTY	1 cut(s)	68
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
AscI	GGCGCGCC	1 cut(s)	523
AspLEI	GCGC	3 cut(s)	130, 525, 527
AspS9I	GGNCC	2 cut(s)	117, 451
AsuC2I	CCSGG	3 cut(s)	196, 197, 455
AsuHPI	GGTGA	1 cut(s)	313
AvaI	CYCGRG	1 cut(s)	195
AvaII	GGWCC	2 cut(s)	117, 451
BbsI	GAAGAC	1 cut(s)	580
BbvI	GCAGC	1 cut(s)	474
BccI	CCATC	3 cut(s)	256, 651, 736
BceAI	ACGGC	1 cut(s)	493
BcnI	CCSGG	3 cut(s)	196, 197, 455
BfmI	CTRYAG	2 cut(s)	499, 606
BfoI	RGCGCY	1 cut(s)	131
BisI	GCNGC	1 cut(s)	463
BlsI	GCNGC	1 cut(s)	464
Bme1390I	CCNGG	3 cut(s)	196, 197, 455
Bme18I	GGWCC	2 cut(s)	117, 451
BmeT110I	CYCGRG	1 cut(s)	195
BmgT120I	GGNCC	2 cut(s)	117, 451
BmiI	GGNNCC	3 cut(s)	212, 453, 690
BmrFI	CCNGG	3 cut(s)	196, 197, 455
BpiI	GAAGAC	1 cut(s)	580
BpuMI	CCSGG	3 cut(s)	196, 197, 455
BsaJI	CCNNGG	5 cut(s)	195, 196, 509, 557, 762
BsaXI	ACNNNNNCTCC	2 cut(s)	707, 737
Bse1I	ACTGG	1 cut(s)	622
Bse3DI	GCAATG	1 cut(s)	576
BseDI	CCNNGG	5 cut(s)	195, 196, 509, 557, 762
BseGI	GGATG	7 cut(s)	235, 355, 378, 445, 643, 707, 750
BseMI	GCAATG	1 cut(s)	576
BseMII	CTCAG	1 cut(s)	626
BseNI	ACTGG	1 cut(s)	622
BsePI	GCGCGC	1 cut(s)	523
BseRI	GAGGAG	2 cut(s)	681, 684
BseXI	GCAGC	1 cut(s)	474
Bsh1236I	CGCG	1 cut(s)	525
BshFI	GGCC	1 cut(s)	88
BsiHKCI	CYCGRG	1 cut(s)	195
BsiSI	CCGG	3 cut(s)	196, 455, 686
BsmI	GAATGC	1 cut(s)	391
BsnI	GGCC	1 cut(s)	88
BsoBI	CYCGRG	1 cut(s)	195
Bsp1407I	TGTACA	1 cut(s)	30
Bsp143I	GATC	2 cut(s)	108, 375
Bsp19I	CCATGG	2 cut(s)	557, 762
BspACI	CCGC	1 cut(s)	120
BspANI	GGCC	1 cut(s)	88
BspCNI	CTCAG	1 cut(s)	625
BspFNI	CGCG	1 cut(s)	525
BspLI	GGNNCC	3 cut(s)	212, 453, 690
BspMAI	CTGCAG	1 cut(s)	503
BspPI	GGATC	1 cut(s)	383
BsrDI	GCAATG	1 cut(s)	576
BsrGI	TGTACA	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	622
BssECI	CCNNGG	5 cut(s)	195, 196, 509, 557, 762
BssHII	GCGCGC	1 cut(s)	523
BssMI	GATC	2 cut(s)	108, 375
BssT1I	CCWWGG	2 cut(s)	557, 762
Bst4CI	ACNGT	2 cut(s)	432, 673
Bst6I	CTCTTC	3 cut(s)	32, 323, 425
BstAUI	TGTACA	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	525, 773
BstDEI	CTNAG	2 cut(s)	435, 612
BstDSI	CCRYGG	3 cut(s)	509, 557, 762
BstF5I	GGATG	7 cut(s)	235, 355, 378, 445, 643, 707, 750
BstFNI	CGCG	1 cut(s)	525
BstH2I	RGCGCY	1 cut(s)	131
BstHHI	GCGC	3 cut(s)	130, 525, 527
BstKTI	GATC	2 cut(s)	111, 378
BstMBI	GATC	2 cut(s)	108, 375
BstMWI	GCNNNNNNNGC	1 cut(s)	94
BstNSI	RCATGY	3 cut(s)	20, 31, 775
BstSCI	CCNGG	3 cut(s)	194, 195, 453
BstSFI	CTRYAG	2 cut(s)	499, 606
BstUI	CGCG	1 cut(s)	525
BstV1I	GCAGC	1 cut(s)	474
BstV2I	GAAGAC	1 cut(s)	580
BsuRI	GGCC	1 cut(s)	88
BtgI	CCRYGG	3 cut(s)	509, 557, 762
BtsCI	GGATG	7 cut(s)	235, 355, 378, 445, 643, 707, 750
BtsI	GCAGTG	1 cut(s)	414
BtsIMutI	CAGTG	3 cut(s)	414, 428, 669
Cac8I	GCNNGC	2 cut(s)	525, 773
CfoI	GCGC	3 cut(s)	130, 525, 527
Cfr13I	GGNCC	2 cut(s)	117, 451
Cfr9I	CCCGGG	1 cut(s)	195
Csp6I	GTAC	1 cut(s)	31
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	2 cut(s)	435, 612
DpnI	GATC	2 cut(s)	110, 377
DpnII	GATC	2 cut(s)	108, 375
Eam1104I	CTCTTC	3 cut(s)	32, 323, 425
EarI	CTCTTC	3 cut(s)	32, 323, 425
Eco130I	CCWWGG	2 cut(s)	557, 762
Eco47I	GGWCC	2 cut(s)	117, 451
Eco47III	AGCGCT	1 cut(s)	129
Eco57I	CTGAAG	1 cut(s)	32
Eco88I	CYCGRG	1 cut(s)	195
EcoO109I	RGGNCCY	1 cut(s)	451
EcoT14I	CCWWGG	2 cut(s)	557, 762
EcoT22I	ATGCAT	1 cut(s)	773
ErhI	CCWWGG	2 cut(s)	557, 762
Fnu4HI	GCNGC	1 cut(s)	463
FokI	GGATG	7 cut(s)	242, 362, 365, 452, 630, 694, 737
Fsp4HI	GCNGC	1 cut(s)	463
GlaI	GCGC	3 cut(s)	129, 524, 526
GluI	GCNGC	1 cut(s)	463
HaeII	RGCGCY	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	88
HapII	CCGG	3 cut(s)	196, 455, 686
HhaI	GCGC	3 cut(s)	130, 525, 527
Hin6I	GCGC	3 cut(s)	128, 523, 525
HinP1I	GCGC	3 cut(s)	128, 523, 525
HinfI	GANTC	7 cut(s)	40, 144, 242, 256, 276, 656, 716
HpaII	CCGG	3 cut(s)	196, 455, 686
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	1 cut(s)	603
Hpy188I	TCNGA	4 cut(s)	261, 551, 615, 715
Hpy188III	TCNNGA	3 cut(s)	154, 253, 382
Hpy8I	GTNNAC	1 cut(s)	603
HpyAV	CCTTC	2 cut(s)	476, 675
HpyCH4III	ACNGT	2 cut(s)	432, 673
HpyCH4V	TGCA	5 cut(s)	16, 164, 478, 501, 771
HpyF10VI	GCNNNNNNNGC	1 cut(s)	94
HpyF3I	CTNAG	2 cut(s)	435, 612
HspAI	GCGC	3 cut(s)	128, 523, 525
Kzo9I	GATC	2 cut(s)	108, 375
LmnI	GCTCC	3 cut(s)	216, 287, 694
Lsp1109I	GCAGC	1 cut(s)	474
MaeIII	GTNAC	4 cut(s)	301, 398, 442, 757
MalI	GATC	2 cut(s)	110, 377
MboI	GATC	2 cut(s)	108, 375
MboII	GAAGA	5 cut(s)	49, 310, 412, 580, 651
MfeI	CAATTG	1 cut(s)	781
MluCI	AATT	4 cut(s)	68, 424, 471, 781
MlyI	GAGTC	3 cut(s)	49, 251, 710
MmeI	TCCRAC	1 cut(s)	738
Mph1103I	ATGCAT	1 cut(s)	773
MslI	CAYNNNNRTG	1 cut(s)	102
MspI	CCGG	3 cut(s)	196, 455, 686
MspR9I	CCNGG	3 cut(s)	196, 197, 455
MunI	CAATTG	1 cut(s)	781
Mva1269I	GAATGC	1 cut(s)	391
MvnI	CGCG	1 cut(s)	525
MwoI	GCNNNNNNNGC	1 cut(s)	94
NciI	CCSGG	3 cut(s)	196, 197, 455
NcoI	CCATGG	2 cut(s)	557, 762
NdeII	GATC	2 cut(s)	108, 375
NlaIV	GGNNCC	3 cut(s)	212, 453, 690
NmuCI	GTSAC	3 cut(s)	301, 398, 442
NsiI	ATGCAT	1 cut(s)	773
NspI	RCATGY	3 cut(s)	20, 31, 775
PaeI	GCATGC	1 cut(s)	775
PalAI	GGCGCGCC	1 cut(s)	523
PauI	GCGCGC	1 cut(s)	523
PciI	ACATGT	1 cut(s)	27
PctI	GAATGC	1 cut(s)	391
PfeI	GAWTC	4 cut(s)	144, 256, 276, 656
PkrI	GCNGC	1 cut(s)	464
PleI	GAGTC	3 cut(s)	48, 250, 710
PpsI	GAGTC	3 cut(s)	48, 250, 710
PpuMI	RGGWCCY	1 cut(s)	451
PscI	ACATGT	1 cut(s)	27
Psp5II	RGGWCCY	1 cut(s)	451
PspN4I	GGNNCC	3 cut(s)	212, 453, 690
PspPI	GGNCC	2 cut(s)	117, 451
PspPPI	RGGWCCY	1 cut(s)	451
PstI	CTGCAG	1 cut(s)	503
PteI	GCGCGC	1 cut(s)	523
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
RseI	CAYNNNNRTG	1 cut(s)	102
SatI	GCNGC	1 cut(s)	463
Sau3AI	GATC	2 cut(s)	108, 375
Sau96I	GGNCC	2 cut(s)	117, 451
SchI	GAGTC	3 cut(s)	49, 251, 710
ScrFI	CCNGG	3 cut(s)	196, 197, 455
SetI	ASST	4 cut(s)	152, 303, 613, 725
SfcI	CTRYAG	2 cut(s)	499, 606
SgsI	GGCGCGCC	1 cut(s)	523
SinI	GGWCC	2 cut(s)	117, 451
SmaI	CCCGGG	1 cut(s)	197
SmiMI	CAYNNNNRTG	1 cut(s)	102
SphI	GCATGC	1 cut(s)	775
Sse9I	AATT	4 cut(s)	68, 424, 471, 781
SsiI	CCGC	1 cut(s)	120
StyD4I	CCNGG	3 cut(s)	194, 195, 453
StyI	CCWWGG	2 cut(s)	557, 762
TaaI	ACNGT	2 cut(s)	432, 673
TaqI	TCGA	2 cut(s)	368, 731
TasI	AATT	4 cut(s)	68, 424, 471, 781
TatI	WGTACW	1 cut(s)	30
TfiI	GAWTC	4 cut(s)	144, 256, 276, 656
TscAI	CASTG	3 cut(s)	414, 435, 676
TseFI	GTSAC	3 cut(s)	301, 398, 442
TseI	GCWGC	1 cut(s)	462
Tsp45I	GTSAC	3 cut(s)	301, 398, 442
TspDTI	ATGAA	5 cut(s)	150, 310, 565, 696, 739
TspMI	CCCGGG	1 cut(s)	195
TspRI	CASTG	3 cut(s)	414, 435, 676
VpaK11BI	GGWCC	2 cut(s)	117, 451
XapI	RAATTY	1 cut(s)	68
XceI	RCATGY	3 cut(s)	20, 31, 775
XmaI	CCCGGG	1 cut(s)	195
Zsp2I	ATGCAT	1 cut(s)	773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.