Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8176162.1

Orthogroup ID

OG0002269

Physical Location & Seq

Genomic Coordinates Forward (+)

205 .. 680

Gene Structure 476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8176162.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 476 bp

atggctggcaccggatggattattcaaattaatgaagatctcaagaacatggaaggtctttcaacagaacaggatcactggaataaggggtcaatctacaaactaccagctagcctcacagacatgaacaagaaggcctacaagcctcaaacagtctccttcggaccttaccactacaattccttaaatccaatggaggagcacaagcaccgcgcgctgcttcatttcctcaaaagatgtggaaagcctgttgagttgtttgtagatgcattggctgaagtagagaatgaattgaaggattcatatactctgcttcgttctgtgccaaaagaaattaccgacatattcctgcaactgatgattttagatggctgtttcatgctggaaatcgtaaggagtgctgctcatgtaccggatgattatgctcctaatgatcccatcttcggagaacatggtaggctccatgtcgtgccata

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

158

Amino Acids

18.03

Weight (kDa)

5.71

Isoelectric Point (pI)

42.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002269)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22070 FvH4_4g22070
malus_domestica	MD16G1130500.v1.1
prunus_persica	Prupe.1G210700_v2.0.a1
pyrus_communis	pycom16g11490
rosa_chinensis	RchiOBHm_Chr4g0427551 RchiOBHm_Chr4g0427561 RchiOBHm_Chr4g0428321 RchiOBHm_Chr4g0428331
rosa_laevigata	RLG00000007164 RLG00000007165 RLG00000007226 RLG00000007227
rosa_multiflora	Rmu_co8176162.1_g000001 Rmu_co8339473.1_g000001 Rmu_sc0007019.1_g000006 Rmu_sc0009627.1_g000005
rosa_roxburghii	Rroxscaffold_5G00369200 Rroxscaffold_5G00369220 Rroxscaffold_5G00369970
rosa_rugosa	Rorug04G0218500 Rorug04G0218600 Rorug04G0224700
rosa_samantha	Rh4AG275100 Rh4AG281300 Rh4AG281400 Rh4AG281500 Rh4BG280900 Rh4BG281000 Rh4BG286900 Rh4BG287000 Rh4BG287100 Rh4CG296200 Rh4CG302500 Rh4CG302600 Rh4CG302700 Rh4DG278300 Rh4DG284000 Rh4DG284100 Rh4DG284200
rosa_wichuraiana	Rw4G023850 Rw4G024430 Rw4G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	8
AccII	CGCG	2 cut(s)	213, 215
AciI	CCGC	1 cut(s)	211
AclWI	GGATC	2 cut(s)	81, 428
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	1 cut(s)	411
AfiI	CCNNNNNNNGG	1 cut(s)	443
AgsI	TTSAA	3 cut(s)	26, 63, 295
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	2 cut(s)	81, 428
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	2 cut(s)	217, 401
AseI	ATTAAT	1 cut(s)	30
AspLEI	GCGC	2 cut(s)	215, 217
AspS9I	GGNCC	1 cut(s)	164
AsuNHI	GCTAGC	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	164
BanI	GGYRCC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	204, 388
BccI	CCATC	3 cut(s)	9, 362, 446
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	1 cut(s)	111
BglII	AGATCT	1 cut(s)	37
BisI	GCNGC	2 cut(s)	218, 402
BlsI	GCNGC	2 cut(s)	219, 403
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	2 cut(s)	10, 461
BmsI	GCATC	1 cut(s)	256
BmtI	GCTAGC	1 cut(s)	114
BplI	GAGNNNNNCTC	2 cut(s)	388, 420
BpuEI	CTTGAG	1 cut(s)	26
BsaWI	WCCGGW	2 cut(s)	11, 412
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse1I	ACTGG	1 cut(s)	83
BseGI	GGATG	2 cut(s)	20, 421
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseNI	ACTGG	1 cut(s)	83
BsePI	GCGCGC	1 cut(s)	213
BseRI	GAGGAG	1 cut(s)	212
BseXI	GCAGC	2 cut(s)	204, 388
Bsh1236I	CGCG	2 cut(s)	213, 215
BshFI	GGCC	1 cut(s)	137
BshNI	GGYRCC	1 cut(s)	8
BsiHKAI	GWGCWC	1 cut(s)	204
BsiSI	CCGG	2 cut(s)	12, 413
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmAI	GTCTC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp143I	GATC	3 cut(s)	37, 73, 433
BspACI	CCGC	1 cut(s)	211
BspANI	GGCC	1 cut(s)	137
BspFNI	CGCG	2 cut(s)	213, 215
BspLI	GGNNCC	2 cut(s)	10, 461
BspOI	GCTAGC	1 cut(s)	114
BspPI	GGATC	2 cut(s)	81, 428
BspT107I	GGYRCC	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	83
BssHII	GCGCGC	1 cut(s)	213
BssMI	GATC	3 cut(s)	37, 73, 433
Bst4CI	ACNGT	1 cut(s)	154
BstC8I	GCNNGC	3 cut(s)	7, 112, 215
BstF5I	GGATG	2 cut(s)	20, 421
BstFNI	CGCG	2 cut(s)	213, 215
BstHHI	GCGC	2 cut(s)	215, 217
BstKTI	GATC	3 cut(s)	40, 76, 436
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	3 cut(s)	37, 73, 433
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstUI	CGCG	2 cut(s)	213, 215
BstV1I	GCAGC	2 cut(s)	204, 388
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	137
BtsCI	GGATG	2 cut(s)	20, 421
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	3 cut(s)	7, 112, 215
CfoI	GCGC	2 cut(s)	215, 217
Cfr13I	GGNCC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	410
CspCI	CAANNNNNGTGG	2 cut(s)	220, 255
CviAII	CATG	6 cut(s)	49, 124, 379, 407, 452, 464
CviJI	RGCY	9 cut(s)	5, 110, 114, 137, 145, 247, 275, 372, 460
CviKI_1	RGCY	9 cut(s)	5, 110, 114, 137, 145, 247, 275, 372, 460
CviQI	GTAC	1 cut(s)	410
DpnI	GATC	3 cut(s)	39, 75, 435
DpnII	GATC	3 cut(s)	37, 73, 433
Eco147I	AGGCCT	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	297
EcoT22I	ATGCAT	1 cut(s)	271
FaeI	CATG	6 cut(s)	52, 127, 382, 410, 455, 467
FatI	CATG	6 cut(s)	48, 123, 378, 406, 451, 463
Fnu4HI	GCNGC	2 cut(s)	218, 402
FokI	GGATG	2 cut(s)	27, 428
Fsp4HI	GCNGC	2 cut(s)	218, 402
FspBI	CTAG	1 cut(s)	111
GlaI	GCGC	2 cut(s)	214, 216
GluI	GCNGC	2 cut(s)	218, 402
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	2 cut(s)	12, 413
HhaI	GCGC	2 cut(s)	215, 217
Hin1II	CATG	6 cut(s)	52, 127, 382, 410, 455, 467
Hin6I	GCGC	2 cut(s)	213, 215
HinP1I	GCGC	2 cut(s)	213, 215
HinfI	GANTC	1 cut(s)	299
HpaII	CCGG	2 cut(s)	12, 413
Hpy188I	TCNGA	2 cut(s)	164, 446
Hpy188III	TCNNGA	1 cut(s)	43
HpyAV	CCTTC	4 cut(s)	47, 127, 169, 289
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4V	TGCA	2 cut(s)	269, 352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
Hsp92II	CATG	6 cut(s)	52, 127, 382, 410, 455, 467
HspAI	GCGC	2 cut(s)	213, 215
Kzo9I	GATC	3 cut(s)	37, 73, 433
LmnI	GCTCC	3 cut(s)	199, 430, 465
LpnPI	CCDG	8 cut(s)	25, 56, 64, 120, 261, 362, 368, 426
Lsp1109I	GCAGC	2 cut(s)	204, 388
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	1 cut(s)	111
MalI	GATC	3 cut(s)	39, 75, 435
MboI	GATC	3 cut(s)	37, 73, 433
MboII	GAAGA	2 cut(s)	47, 433
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	4 cut(s)	27, 178, 290, 333
MnlI	CCTC	4 cut(s)	125, 156, 190, 239
Mph1103I	ATGCAT	1 cut(s)	271
MseI	TTAA	2 cut(s)	30, 185
MslI	CAYNNNNRTG	1 cut(s)	122
MspI	CCGG	2 cut(s)	12, 413
MvnI	CGCG	2 cut(s)	213, 215
MwoI	GCNNNNNNNGC	1 cut(s)	214
NdeII	GATC	3 cut(s)	37, 73, 433
NheI	GCTAGC	1 cut(s)	110
NlaIII	CATG	6 cut(s)	52, 127, 382, 410, 455, 467
NlaIV	GGNNCC	2 cut(s)	10, 461
NsiI	ATGCAT	1 cut(s)	271
PauI	GCGCGC	1 cut(s)	213
PceI	AGGCCT	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	299
PkrI	GCNGC	2 cut(s)	219, 403
PshBI	ATTAAT	1 cut(s)	30
PspN4I	GGNNCC	2 cut(s)	10, 461
PspPI	GGNCC	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	37
PteI	GCGCGC	1 cut(s)	213
RsaI	GTAC	1 cut(s)	411
RsaNI	GTAC	1 cut(s)	410
RseI	CAYNNNNRTG	1 cut(s)	122
SaqAI	TTAA	2 cut(s)	30, 185
SatI	GCNGC	2 cut(s)	218, 402
Sau3AI	GATC	3 cut(s)	37, 73, 433
Sau96I	GGNCC	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	3 cut(s)	58, 112, 169
SfaNI	GCATC	1 cut(s)	256
SinI	GGWCC	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	4 cut(s)	27, 178, 290, 333
SseBI	AGGCCT	1 cut(s)	137
SsiI	CCGC	1 cut(s)	211
SspMI	CTAG	1 cut(s)	111
StuI	AGGCCT	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	154
TasI	AATT	4 cut(s)	27, 178, 290, 333
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	2 cut(s)	30, 185
Tru9I	TTAA	2 cut(s)	30, 185
TscAI	CASTG	1 cut(s)	83
TseI	GCWGC	2 cut(s)	217, 401
TspDTI	ATGAA	6 cut(s)	48, 140, 212, 291, 303, 367
TspRI	CASTG	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	164
VspI	ATTAAT	1 cut(s)	30
XspI	CTAG	1 cut(s)	111
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.