Rorug04G0224700

UPF0481 protein At3g47200-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
38566990 .. 38569379
2390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0224700.1

Sequence Viewer

Length: 1524 bp
ATGGCGGGCGGCTTTGGGACGCCGGCACACGGAGGTGGCGGAGACTTTGAGGCAAAGATCACGCTGGTTGTGGTCATTTCTTGTATATTGGCTGCTAGTGGGGGCCTCATGTTTGGTTATGATATTGGTATTTCGGGGGGCGTTACAGCCATGCCTCCCTTCCTGAAGAAATTTTTTCCGGTTGTCTATAAGAAGACCCAGGAGAAAGGAAATGAGAGCAATTACTGCAAATACGACAATCAAGGCCTGCAGTTGTTCACATCTTCACTGTACCTCGCTGCTTTAACAGCAACATTTGCTGCATCGCACACAACAAGAACGCTAGGCCGAAAAGCAACCATGTTGATTGCTGGAATTTTCTTCATACTCGGAACTATTTTCAATGCTGCAGCTGTGAACCTTCTCATGCTTATTATTGGGAGGATCTTACTTGGTTGTGGAGTTGGTTTTGCTAATCAGGCGGTGCCGCTGTTCCTTTCTGAGATTGCACCTACAAGAATTCGTGGAGCACTCAACATTCTCTTCCAGCTCAATACCACCATTGGCATTCTTTTTGCGAACCTTGTCAATTATGGCACTGCCAAAATTTCAGGGGGGTGGGGATGGAGGCTATCTTTGGGATTGGCCGGCGTTCCTGCAGTTATGCTGACCTTGGGGTCTCTTATTGTGATAGACACTCCCAACAGTTTGATTGCACGCGGTAAGTTGGAGGAAGGAAAAGCAGCTCTTAAAAAGATTCGAGGTGTTAGCAATGTTGAGCCAGAATACTTGGAGATTGTGGAGGCAAGTCGTGTGGCTTCTGAAGTGAAGCATCCCATGAGAAATCTTCTTAAGCGCCGGAACAGACCTCAACTGGTCATTGCAGTTTGTATGCAGATCTTCCAGCAATTCACTGGCATTAACGCAATCATGTTTTATGCTCCAGTTTTGTTCAACACCGTAGGATTCAAAAGCGATGCTTCCCTTTACTCTGCTGTTATAACAGGAGCCGTCAATGTCCTCGCCACCTTAGTATCAATCTACTCGGTGGACAGACTTGGTCGCCGCATCCTCTTGCTACAAGCCGGTTTCCAGATGTTCTTCTCTCAAATGGTGGTTGCAGTTGTTCTTGGCCTCAGAGTTAAGGACTATTCTGAAAGCCTCACTAAGGGCTTGGCATTACTTGTGGTGGTGATGGTGTGCACATTTGTGTCAGCCTTTGCATGGTCTTGGGGGCCTCTCGGTTGGTTGATCCCTAGTGAGACTTTCCCACTTGAGACTCGTTCAGCCGGCCAGAGTGTTGCCGTCTGTGTTAACATGGTCTTCACATTTGTTATAGCACAGTCCTTCATATCAATGCTTTGTCACTTCAAGTTTGGCATCTTCATATTTTTCTCAGGTTGGGTCTTGGTCATGTCAGCCTTTGTGCTGATGTATCTTCCTGAAACCAAGAATGTCCCTATTGAAGAGATGACAGACAGAGTCTGGAGGCGACATTGGTATTGGAGGAGATTTGTGGATGATGATGAAAACGGGGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

507

Amino Acids

55.4

Weight (kDa)

9.42

Isoelectric Point (pI)

37.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 28 - 485 3e-118 Sugar (and other) transporter
MFS_1 PF07690 79 - 435 1.4e-20 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 980
AasI GACNNNNNNGTC 1 cut(s) 655
AccB1I GGYRCC 1 cut(s) 463
AccII CGCG 1 cut(s) 699
AciI CCGC 7 cut(s) 5, 9, 39, 461, 467, 699, 1045
AclWI GGATC 2 cut(s) 431, 1225
AcoI YGGCCR 2 cut(s) 624, 1270
AcsI RAATTY 4 cut(s) 170, 354, 498, 585
AcuI CTGAAG 2 cut(s) 185, 822
AcyI GRCGYC 1 cut(s) 20
AfaI GTAC 1 cut(s) 272
AfiI CCNNNNNNNGG 3 cut(s) 29, 1147, 1203
AflII CTTAAG 1 cut(s) 830
AgsI TTSAA 5 cut(s) 382, 934, 949, 1351, 1445
AjnI CCWGG 1 cut(s) 198
AleI CACNNNNGTG 2 cut(s) 33, 1187
AluBI AGCT 3 cut(s) 392, 529, 725
AluI AGCT 3 cut(s) 392, 529, 725
Alw21I GWGCWC 2 cut(s) 511, 1184
Alw26I GTCTC 4 cut(s) 36, 663, 1235, 1250
Alw44I GTGCAC 1 cut(s) 1180
AlwI GGATC 2 cut(s) 431, 1225
AlwNI CAGNNNCTG 1 cut(s) 1464
AoxI GGCC 7 cut(s) 103, 244, 325, 624, 1111, 1214, 1270
ApaLI GTGCAC 1 cut(s) 1180
ApeKI GCWGC 6 cut(s) 92, 278, 299, 386, 389, 722
ApoI RAATTY 4 cut(s) 170, 354, 498, 585
AspLEI GCGC 1 cut(s) 837
AspS9I GGNCC 2 cut(s) 103, 1214
AsuHPI GGTGA 1 cut(s) 1183
BaeGI GKGCMC 1 cut(s) 1184
BaeI ACNNNNGTAYC 2 cut(s) 996, 1029
BanI GGYRCC 1 cut(s) 463
BbsI GAAGAC 2 cut(s) 200, 1294
Bbv12I GWGCWC 2 cut(s) 511, 1184
BbvI GCAGC 6 cut(s) 79, 265, 286, 373, 401, 734
BccI CCATC 2 cut(s) 597, 1168
BceAI ACGGC 2 cut(s) 974, 1268
BciT130I CCWGG 1 cut(s) 200
BcoDI GTCTC 4 cut(s) 36, 663, 1235, 1250
BfaI CTAG 3 cut(s) 96, 323, 1236
BfmI CTRYAG 3 cut(s) 248, 387, 636
BfoI RGCGCY 1 cut(s) 838
BfrI CTTAAG 1 cut(s) 830
BglII AGATCT 1 cut(s) 876
BisI GCNGC 9 cut(s) 10, 93, 279, 300, 387, 390, 467, 723, 1045
BlsI GCNGC 9 cut(s) 11, 94, 280, 301, 388, 391, 468, 724, 1046
Bme1390I CCNGG 1 cut(s) 200
BmgT120I GGNCC 2 cut(s) 103, 1214
BmiI GGNNCC 4 cut(s) 104, 465, 988, 1215
BmrFI CCNGG 1 cut(s) 200
BmsI GCATC 6 cut(s) 311, 820, 946, 1056, 1368, 1507
BpiI GAAGAC 2 cut(s) 200, 1294
BpmI CTGGAG 2 cut(s) 906, 1486
BpuEI CTTGAG 1 cut(s) 1274
BsaHI GRCGYC 1 cut(s) 20
BsaI GGTCTC 1 cut(s) 663
BsaJI CCNNGG 2 cut(s) 198, 651
BsaWI WCCGGW 1 cut(s) 178
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 1147, 1203
Bse118I RCCGGY 4 cut(s) 22, 626, 1064, 1268
Bse1I ACTGG 3 cut(s) 858, 898, 923
Bse3DI GCAATG 2 cut(s) 757, 858
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 2 cut(s) 198, 651
BseGI GGATG 5 cut(s) 608, 811, 1047, 1504, 1522
BseLI CCNNNNNNNGG 3 cut(s) 29, 1147, 1203
BseMI GCAATG 2 cut(s) 757, 858
BseMII CTCAG 3 cut(s) 471, 1129, 1389
BseNI ACTGG 3 cut(s) 858, 898, 923
BseRI GAGGAG 1 cut(s) 1501
BseSI GKGCMC 1 cut(s) 1184
BseXI GCAGC 6 cut(s) 79, 265, 286, 373, 401, 734
Bsh1236I CGCG 1 cut(s) 699
BshFI GGCC 7 cut(s) 105, 246, 327, 626, 1113, 1216, 1272
BshNI GGYRCC 1 cut(s) 463
BsiHKAI GWGCWC 2 cut(s) 511, 1184
BsiSI CCGG 6 cut(s) 23, 179, 627, 838, 1065, 1269
BslFI GGGAC 2 cut(s) 31, 1421
BslI CCNNNNNNNGG 3 cut(s) 29, 1147, 1203
BsmAI GTCTC 4 cut(s) 36, 663, 1235, 1250
BsmFI GGGAC 2 cut(s) 31, 1421
BsmI GAATGC 1 cut(s) 546
BsnI GGCC 7 cut(s) 105, 246, 327, 626, 1113, 1216, 1272
Bso31I GGTCTC 1 cut(s) 663
Bsp1286I GDGCHC 2 cut(s) 511, 1184
Bsp143I GATC 4 cut(s) 57, 423, 876, 1230
BspACI CCGC 7 cut(s) 5, 9, 39, 461, 467, 699, 1045
BspANI GGCC 7 cut(s) 105, 246, 327, 626, 1113, 1216, 1272
BspCNI CTCAG 3 cut(s) 472, 1128, 1388
BspFNI CGCG 1 cut(s) 699
BspLI GGNNCC 4 cut(s) 104, 465, 988, 1215
BspMAI CTGCAG 3 cut(s) 252, 391, 640
BspPI GGATC 2 cut(s) 431, 1225
BspT107I GGYRCC 1 cut(s) 463
BspTI CTTAAG 1 cut(s) 830
BspTNI GGTCTC 1 cut(s) 663
BsrDI GCAATG 2 cut(s) 757, 858
BsrFI RCCGGY 4 cut(s) 22, 626, 1064, 1268
BsrI ACTGG 3 cut(s) 858, 898, 923
BssAI RCCGGY 4 cut(s) 22, 626, 1064, 1268
BssECI CCNNGG 2 cut(s) 198, 651
BssMI GATC 4 cut(s) 57, 423, 876, 1230
BssNI GRCGYC 1 cut(s) 20
BssT1I CCWWGG 1 cut(s) 651
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 4 cut(s) 270, 686, 940, 1323
Bst6I CTCTTC 2 cut(s) 527, 1440
BstACI GRCGYC 1 cut(s) 20
BstAFI CTTAAG 1 cut(s) 830
BstAPI GCANNNNNTGC 2 cut(s) 225, 296
BstC8I GCNNGC 6 cut(s) 7, 24, 248, 628, 697, 1270
BstDEI CTNAG 5 cut(s) 480, 1009, 1115, 1146, 1375
BstENI CCTNNNNNAGG 1 cut(s) 1145
BstF5I GGATG 5 cut(s) 608, 811, 1047, 1504, 1522
BstFNI CGCG 1 cut(s) 699
BstH2I RGCGCY 1 cut(s) 838
BstHHI GCGC 1 cut(s) 837
BstKTI GATC 4 cut(s) 60, 426, 879, 1233
BstMAI GTCTC 4 cut(s) 36, 663, 1235, 1250
BstMBI GATC 4 cut(s) 57, 423, 876, 1230
BstMWI GCNNNNNNNGC 4 cut(s) 225, 287, 296, 458
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 198
BstSFI CTRYAG 3 cut(s) 248, 387, 636
BstSLI GKGCMC 1 cut(s) 1184
BstUI CGCG 1 cut(s) 699
BstV1I GCAGC 6 cut(s) 79, 265, 286, 373, 401, 734
BstV2I GAAGAC 2 cut(s) 200, 1294
BstX2I RGATCY 2 cut(s) 423, 876
BstYI RGATCY 2 cut(s) 423, 876
BsuRI GGCC 7 cut(s) 105, 246, 327, 626, 1113, 1216, 1272
BtgZI GCGATG 2 cut(s) 288, 969
BtsCI GGATG 5 cut(s) 608, 811, 1047, 1504, 1522
BtsI GCAGTG 1 cut(s) 576
BtsIMutI CAGTG 3 cut(s) 266, 576, 891
Cac8I GCNNGC 6 cut(s) 7, 24, 248, 628, 697, 1270
CaiI CAGNNNCTG 1 cut(s) 1464
CfoI GCGC 1 cut(s) 837
Cfr10I RCCGGY 4 cut(s) 22, 626, 1064, 1268
Cfr13I GGNCC 2 cut(s) 103, 1214
CseI GACGC 1 cut(s) 28
Csp6I GTAC 1 cut(s) 271
CspCI CAANNNNNGTGG 2 cut(s) 774, 809
CviAII CATG 9 cut(s) 109, 151, 340, 406, 817, 910, 1203, 1297, 1393
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 5 cut(s) 480, 1009, 1115, 1146, 1375
DpnI GATC 4 cut(s) 59, 425, 878, 1232
DpnII GATC 4 cut(s) 57, 423, 876, 1230
DrdI GACNNNNNNGTC 1 cut(s) 655
DseDI GACNNNNNNGTC 1 cut(s) 655
EaeI YGGCCR 2 cut(s) 624, 1270
Eam1104I CTCTTC 2 cut(s) 527, 1440
EarI CTCTTC 2 cut(s) 527, 1440
EciI GGCGGA 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 651
Eco147I AGGCCT 1 cut(s) 246
Eco31I GGTCTC 1 cut(s) 663
Eco57I CTGAAG 2 cut(s) 185, 822
EcoNI CCTNNNNNAGG 1 cut(s) 1145
EcoO109I RGGNCCY 2 cut(s) 103, 1214
EcoRI GAATTC 1 cut(s) 498
EcoRII CCWGG 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 651
ErhI CCWWGG 1 cut(s) 651
FaeI CATG 9 cut(s) 112, 154, 343, 409, 820, 913, 1206, 1300, 1396
FalI AAGNNNNNCTT 4 cut(s) 711, 743, 943, 975
FaqI GGGAC 2 cut(s) 31, 1421
FatI CATG 9 cut(s) 108, 150, 339, 405, 816, 909, 1202, 1296, 1392
Fnu4HI GCNGC 9 cut(s) 10, 93, 279, 300, 387, 390, 467, 723, 1045
FokI GGATG 4 cut(s) 615, 798, 1034, 1511
Fsp4HI GCNGC 9 cut(s) 10, 93, 279, 300, 387, 390, 467, 723, 1045
FspBI CTAG 3 cut(s) 96, 323, 1236
GlaI GCGC 1 cut(s) 836
GluI GCNGC 9 cut(s) 10, 93, 279, 300, 387, 390, 467, 723, 1045
GsuI CTGGAG 2 cut(s) 906, 1486
HaeII RGCGCY 1 cut(s) 838
HaeIII GGCC 7 cut(s) 105, 246, 327, 626, 1113, 1216, 1272
HapII CCGG 6 cut(s) 23, 179, 627, 838, 1065, 1269
HgaI GACGC 1 cut(s) 28
HhaI GCGC 1 cut(s) 837
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 9 cut(s) 112, 154, 343, 409, 820, 913, 1206, 1300, 1396
Hin6I GCGC 1 cut(s) 835
HinP1I GCGC 1 cut(s) 835
HincII GTYRAC 1 cut(s) 1294
HindII GTYRAC 1 cut(s) 1294
HinfI GANTC 4 cut(s) 736, 945, 1258, 1461
HpaI GTTAAC 1 cut(s) 1294
HpaII CCGG 6 cut(s) 23, 179, 627, 838, 1065, 1269
HphI GGTGA 1 cut(s) 1183
Hpy166II GTNNAC 5 cut(s) 258, 397, 1030, 1182, 1294
Hpy188I TCNGA 5 cut(s) 371, 481, 802, 1118, 1135
Hpy188III TCNNGA 4 cut(s) 163, 1072, 1421, 1465
Hpy8I GTNNAC 5 cut(s) 258, 397, 1030, 1182, 1294
HpyAV CCTTC 4 cut(s) 169, 410, 707, 1336
HpyCH4III ACNGT 4 cut(s) 270, 686, 940, 1323
HpyF10VI GCNNNNNNNGC 4 cut(s) 225, 287, 296, 458
HpyF3I CTNAG 5 cut(s) 480, 1009, 1115, 1146, 1375
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 9 cut(s) 112, 154, 343, 409, 820, 913, 1206, 1300, 1396
HspAI GCGC 1 cut(s) 835
KroI GCCGGC 3 cut(s) 22, 626, 1268
KroNI GCCGGC 3 cut(s) 24, 628, 1270
KspAI GTTAAC 1 cut(s) 1294
Kzo9I GATC 4 cut(s) 57, 423, 876, 1230
LmnI GCTCC 3 cut(s) 506, 925, 986
Lsp1109I GCAGC 6 cut(s) 79, 265, 286, 373, 401, 734
LweI GCATC 6 cut(s) 311, 820, 946, 1056, 1368, 1507
MaeI CTAG 3 cut(s) 96, 323, 1236
MaeIII GTNAC 2 cut(s) 142, 1343
MalI GATC 4 cut(s) 59, 425, 878, 1232
MboI GATC 4 cut(s) 57, 423, 876, 1230
MflI RGATCY 2 cut(s) 423, 876
MhlI GDGCHC 2 cut(s) 511, 1184
MluCI AATT 7 cut(s) 170, 220, 354, 498, 568, 585, 887
MlyI GAGTC 2 cut(s) 1252, 1470
MmeI TCCRAC 1 cut(s) 687
MroNI GCCGGC 3 cut(s) 22, 626, 1268
MseI TTAA 6 cut(s) 284, 729, 831, 900, 1122, 1293
MslI CAYNNNNRTG 3 cut(s) 33, 1187, 1334
MspA1I CMGCKG 2 cut(s) 392, 469
MspCI CTTAAG 1 cut(s) 830
MspI CCGG 6 cut(s) 23, 179, 627, 838, 1065, 1269
MspR9I CCNGG 1 cut(s) 200
Mva1269I GAATGC 1 cut(s) 546
MvaI CCWGG 1 cut(s) 200
MvnI CGCG 1 cut(s) 699
MwoI GCNNNNNNNGC 4 cut(s) 225, 287, 296, 458
NaeI GCCGGC 3 cut(s) 24, 628, 1270
NdeII GATC 4 cut(s) 57, 423, 876, 1230
NgoMIV GCCGGC 3 cut(s) 22, 626, 1268
NlaIII CATG 9 cut(s) 112, 154, 343, 409, 820, 913, 1206, 1300, 1396
NlaIV GGNNCC 4 cut(s) 104, 465, 988, 1215
NmuCI GTSAC 1 cut(s) 1343
OliI CACNNNNGTG 2 cut(s) 33, 1187
PceI AGGCCT 1 cut(s) 246
PctI GAATGC 1 cut(s) 546
PdiI GCCGGC 3 cut(s) 24, 628, 1270
PfeI GAWTC 2 cut(s) 736, 945
PflFI GACNNNGTC 2 cut(s) 1038, 1460
PkrI GCNGC 9 cut(s) 11, 94, 280, 301, 388, 391, 468, 724, 1046
PleI GAGTC 2 cut(s) 1252, 1469
PpsI GAGTC 2 cut(s) 1252, 1469
PsiI TTATAA 1 cut(s) 980
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 4 cut(s) 104, 465, 988, 1215
PspPI GGNCC 2 cut(s) 103, 1214
PstI CTGCAG 3 cut(s) 252, 391, 640
PstNI CAGNNNCTG 1 cut(s) 1464
PsuI RGATCY 2 cut(s) 423, 876
PsyI GACNNNGTC 2 cut(s) 1038, 1460
PvuII CAGCTG 1 cut(s) 392
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
RseI CAYNNNNRTG 3 cut(s) 33, 1187, 1334
SaqAI TTAA 6 cut(s) 284, 729, 831, 900, 1122, 1293
SatI GCNGC 9 cut(s) 10, 93, 279, 300, 387, 390, 467, 723, 1045
Sau3AI GATC 4 cut(s) 57, 423, 876, 1230
Sau96I GGNCC 2 cut(s) 103, 1214
SchI GAGTC 2 cut(s) 1252, 1470
ScrFI CCNGG 1 cut(s) 200
SduI GDGCHC 2 cut(s) 511, 1184
SfaNI GCATC 6 cut(s) 311, 820, 946, 1056, 1368, 1507
SfcI CTRYAG 3 cut(s) 248, 387, 636
SmiMI CAYNNNNRTG 3 cut(s) 33, 1187, 1334
SmlI CTYRAG 2 cut(s) 830, 1253
SmoI CTYRAG 2 cut(s) 830, 1253
Sse9I AATT 7 cut(s) 170, 220, 354, 498, 568, 585, 887
SseBI AGGCCT 1 cut(s) 246
SsiI CCGC 7 cut(s) 5, 9, 39, 461, 467, 699, 1045
SspMI CTAG 3 cut(s) 96, 323, 1236
StuI AGGCCT 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 1 cut(s) 651
TaaI ACNGT 4 cut(s) 270, 686, 940, 1323
TaqI TCGA 1 cut(s) 739
TasI AATT 7 cut(s) 170, 220, 354, 498, 568, 585, 887
TauI GCSGC 3 cut(s) 12, 469, 1047
TfiI GAWTC 2 cut(s) 736, 945
Tru1I TTAA 6 cut(s) 284, 729, 831, 900, 1122, 1293
Tru9I TTAA 6 cut(s) 284, 729, 831, 900, 1122, 1293
TscAI CASTG 3 cut(s) 273, 583, 898
TseFI GTSAC 1 cut(s) 1343
TseI GCWGC 6 cut(s) 92, 278, 299, 386, 389, 722
Tsp45I GTSAC 1 cut(s) 1343
TspDTI ATGAA 4 cut(s) 352, 1318, 1354, 1521
TspGWI ACGGA 1 cut(s) 45
TspRI CASTG 3 cut(s) 273, 583, 898
Tth111I GACNNNGTC 2 cut(s) 1038, 1460
Vha464I CTTAAG 1 cut(s) 830
VneI GTGCAC 1 cut(s) 1180
XagI CCTNNNNNAGG 1 cut(s) 1145
XapI RAATTY 4 cut(s) 170, 354, 498, 585
XcmI CCANNNNNNNNNTGG 1 cut(s) 890
XspI CTAG 3 cut(s) 96, 323, 1236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.