Rh4AG281400

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0002269
Physical Location & Seq
Reverse (-)
59651861 .. 59652565
705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG281400.1

Sequence Viewer

Length: 705 bp
ATGGGCAAGTGTGTGCACGTATGGGACGTGTACAGGAAGAGCCTGCTTCAGGAAGATCCCCACCAGAAAATAGTTCGCCACAGAGCGTCTGTGAATGGCAGTGCAATCATCTGGTCTGCAACAGAGCTTAAAGAAGCCGGAATCAGATTCAAGAAAAGCAAATCTGCAAGCCTCAAAGACATCTCATTCTCTGGGGGAATCCTGAAGCTCCCACTTATGGTTGTGGATGATTCAACCGAGTCCATGTTCTTGAATATGATAGCATTTGAGAGATTCCATGTTGGAGCAGGAAATGAGGTGACGTCTTACATATTCTTCATGGACAGCATCATAGACAATCACAGAGATGTTGGCCTCCTGCAATCAAAAGGCATCATCCACAACTTTCTGGGAAGTGATGATGCCGTGGCTAAACTTTTGAACTCACTCTCCAAGGATATAACTCTTGACCCAGACTGCAGCCTTGATAAAGTTCATAAAAGTGTCTATCACTACTGCAAGAAGCCTTGGAATAACGAGTGGCGCGCTAATCTTATCCAGACTTATTTCAGAAATCCATGGGCTATTATATCTCTTTTTGCAGCAATCTTGCTCTTTGTGCTTACTATAGCTCAGACTGTTACCCAGGTGATGGATGAAATAGCTCCCTCCTCTCCAGAACCGGGGTCTCCTCCTCCACCTATGGTGTCTTCAAATCGTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

234

Amino Acids

26.2

Weight (kDa)

7.76

Isoelectric Point (pI)

27.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 3 - 201 4.2e-63 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 305
AccB7I CCANNNNNTGG 1 cut(s) 631
AccII CGCG 1 cut(s) 525
AclWI GGATC 1 cut(s) 50
AcuI CTGAAG 2 cut(s) 32, 224
AcyI GRCGYC 1 cut(s) 302
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 4 cut(s) 49, 217, 631, 662
AflIII ACRYGT 1 cut(s) 27
AgsI TTSAA 5 cut(s) 151, 234, 253, 421, 693
AjiI CACGTC 1 cut(s) 28
AjnI CCWGG 1 cut(s) 624
AloI GAACNNNNNNTCC 2 cut(s) 413, 445
AluBI AGCT 4 cut(s) 127, 208, 611, 644
AluI AGCT 4 cut(s) 127, 208, 611, 644
Alw21I GWGCWC 1 cut(s) 18
Alw26I GTCTC 1 cut(s) 672
Alw44I GTGCAC 1 cut(s) 14
AlwI GGATC 1 cut(s) 50
AoxI GGCC 1 cut(s) 352
ApaLI GTGCAC 1 cut(s) 14
ApeKI GCWGC 2 cut(s) 459, 581
AspLEI GCGC 2 cut(s) 525, 527
AsuC2I CCSGG 1 cut(s) 663
AsuHPI GGTGA 2 cut(s) 310, 640
BaeGI GKGCMC 1 cut(s) 18
BbsI GAAGAC 1 cut(s) 681
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 2 cut(s) 471, 593
BccI CCATC 1 cut(s) 625
BceAI ACGGC 1 cut(s) 389
BciT130I CCWGG 1 cut(s) 626
BcnI CCSGG 1 cut(s) 663
BcoDI GTCTC 1 cut(s) 672
BfmI CTRYAG 2 cut(s) 457, 606
BisI GCNGC 2 cut(s) 460, 582
BlsI GCNGC 2 cut(s) 461, 583
Bme1390I CCNGG 2 cut(s) 626, 663
BmgBI CACGTC 1 cut(s) 28
BmrFI CCNGG 2 cut(s) 626, 663
BmsI GCATC 3 cut(s) 336, 381, 391
BpiI GAAGAC 1 cut(s) 681
BpmI CTGGAG 1 cut(s) 639
BpuMI CCSGG 1 cut(s) 663
BsaAI YACGTR 1 cut(s) 19
BsaHI GRCGYC 1 cut(s) 302
BsaI GGTCTC 1 cut(s) 672
BsaJI CCNNGG 6 cut(s) 405, 432, 506, 557, 624, 662
BsaXI ACNNNNNCTCC 2 cut(s) 413, 443
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 217, 631, 662
BseBI CCWGG 1 cut(s) 626
BseDI CCNNGG 6 cut(s) 405, 432, 506, 557, 624, 662
BseGI GGATG 3 cut(s) 232, 375, 640
BseLI CCNNNNNNNGG 4 cut(s) 49, 217, 631, 662
BseMII CTCAG 1 cut(s) 626
BsePI GCGCGC 1 cut(s) 523
BseRI GAGGAG 3 cut(s) 640, 660, 663
BseSI GKGCMC 1 cut(s) 18
BseXI GCAGC 2 cut(s) 471, 593
Bsh1236I CGCG 1 cut(s) 525
BshFI GGCC 1 cut(s) 354
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 2 cut(s) 138, 662
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 4 cut(s) 49, 217, 631, 662
BsmAI GTCTC 1 cut(s) 672
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 1 cut(s) 354
Bso31I GGTCTC 1 cut(s) 672
Bsp1286I GDGCHC 1 cut(s) 18
Bsp1407I TGTACA 1 cut(s) 30
Bsp143I GATC 1 cut(s) 55
Bsp19I CCATGG 1 cut(s) 557
BspANI GGCC 1 cut(s) 354
BspCNI CTCAG 1 cut(s) 625
BspFNI CGCG 1 cut(s) 525
BspMAI CTGCAG 1 cut(s) 461
BspPI GGATC 1 cut(s) 50
BspQI GCTCTTC 1 cut(s) 32
BspTNI GGTCTC 1 cut(s) 672
BsrGI TGTACA 1 cut(s) 30
BssECI CCNNGG 6 cut(s) 405, 432, 506, 557, 624, 662
BssHII GCGCGC 1 cut(s) 523
BssMI GATC 1 cut(s) 55
BssNI GRCGYC 1 cut(s) 302
BssT1I CCWWGG 3 cut(s) 432, 506, 557
Bst2UI CCWGG 1 cut(s) 626
Bst4CI ACNGT 1 cut(s) 619
Bst6I CTCTTC 1 cut(s) 32
BstACI GRCGYC 1 cut(s) 302
BstAUI TGTACA 1 cut(s) 30
BstBAI YACGTR 1 cut(s) 19
BstC8I GCNNGC 3 cut(s) 44, 169, 525
BstDEI CTNAG 1 cut(s) 612
BstDSI CCRYGG 2 cut(s) 405, 557
BstENI CCTNNNNNAGG 1 cut(s) 47
BstF5I GGATG 3 cut(s) 232, 375, 640
BstFNI CGCG 1 cut(s) 525
BstHHI GCGC 2 cut(s) 525, 527
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 1 cut(s) 672
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 598
BstNI CCWGG 1 cut(s) 626
BstSCI CCNGG 2 cut(s) 624, 661
BstSFI CTRYAG 2 cut(s) 457, 606
BstSLI GKGCMC 1 cut(s) 18
BstUI CGCG 1 cut(s) 525
BstV1I GCAGC 2 cut(s) 471, 593
BstV2I GAAGAC 1 cut(s) 681
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BsuRI GGCC 1 cut(s) 354
BtgI CCRYGG 2 cut(s) 405, 557
BtrI CACGTC 1 cut(s) 28
BtsCI GGATG 3 cut(s) 232, 375, 640
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 106
Cac8I GCNNGC 3 cut(s) 44, 169, 525
CfoI GCGC 2 cut(s) 525, 527
CseI GACGC 1 cut(s) 75
Csp6I GTAC 1 cut(s) 31
CviAII CATG 4 cut(s) 244, 278, 319, 558
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 1 cut(s) 612
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco130I CCWWGG 3 cut(s) 432, 506, 557
Eco31I GGTCTC 1 cut(s) 672
Eco57I CTGAAG 2 cut(s) 32, 224
EcoNI CCTNNNNNAGG 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 624
EcoT14I CCWWGG 3 cut(s) 432, 506, 557
ErhI CCWWGG 3 cut(s) 432, 506, 557
FaeI CATG 4 cut(s) 247, 281, 322, 561
FaqI GGGAC 1 cut(s) 38
FatI CATG 4 cut(s) 243, 277, 318, 557
Fnu4HI GCNGC 2 cut(s) 460, 582
FokI GGATG 3 cut(s) 239, 362, 647
Fsp4HI GCNGC 2 cut(s) 460, 582
GlaI GCGC 2 cut(s) 524, 526
GluI GCNGC 2 cut(s) 460, 582
GsuI CTGGAG 1 cut(s) 639
HaeIII GGCC 1 cut(s) 354
HapII CCGG 2 cut(s) 138, 662
HgaI GACGC 1 cut(s) 75
HhaI GCGC 2 cut(s) 525, 527
Hin1I GRCGYC 1 cut(s) 302
Hin1II CATG 4 cut(s) 247, 281, 322, 561
Hin6I GCGC 2 cut(s) 523, 525
HinP1I GCGC 2 cut(s) 523, 525
HinfI GANTC 6 cut(s) 141, 147, 198, 230, 239, 273
HpaII CCGG 2 cut(s) 138, 662
HphI GGTGA 2 cut(s) 310, 640
Hpy166II GTNNAC 2 cut(s) 16, 31
Hpy188I TCNGA 3 cut(s) 146, 551, 615
Hpy188III TCNNGA 7 cut(s) 50, 151, 202, 250, 446, 538, 656
Hpy8I GTNNAC 2 cut(s) 16, 31
HpyCH4III ACNGT 1 cut(s) 619
HpyCH4IV ACGT 3 cut(s) 18, 27, 302
HpyCH4V TGCA 9 cut(s) 16, 104, 119, 167, 361, 459, 498, 581, 701
HpyF10VI GCNNNNNNNGC 1 cut(s) 598
HpyF3I CTNAG 1 cut(s) 612
HpySE526I ACGT 3 cut(s) 18, 27, 302
Hsp92I GRCGYC 1 cut(s) 302
Hsp92II CATG 4 cut(s) 247, 281, 322, 561
HspAI GCGC 2 cut(s) 523, 525
Kzo9I GATC 1 cut(s) 55
LguI GCTCTTC 1 cut(s) 32
LmnI GCTCC 3 cut(s) 213, 284, 649
Lsp1109I GCAGC 2 cut(s) 471, 593
LweI GCATC 3 cut(s) 336, 381, 391
MaeII ACGT 3 cut(s) 18, 27, 302
MaeIII GTNAC 2 cut(s) 298, 619
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 4 cut(s) 49, 65, 307, 681
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 18
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 1 cut(s) 262
MnlI CCTC 7 cut(s) 182, 289, 365, 658, 661, 681, 684
MseI TTAA 1 cut(s) 129
MslI CAYNNNNRTG 2 cut(s) 345, 480
MspI CCGG 2 cut(s) 138, 662
MspR9I CCNGG 2 cut(s) 626, 663
MvaI CCWGG 1 cut(s) 626
MvnI CGCG 1 cut(s) 525
MwoI GCNNNNNNNGC 1 cut(s) 598
NciI CCSGG 1 cut(s) 663
NcoI CCATGG 1 cut(s) 557
NdeII GATC 1 cut(s) 55
NlaIII CATG 4 cut(s) 247, 281, 322, 561
NmuCI GTSAC 1 cut(s) 298
PauI GCGCGC 1 cut(s) 523
PciSI GCTCTTC 1 cut(s) 32
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PfeI GAWTC 5 cut(s) 141, 147, 198, 230, 273
PflMI CCANNNNNTGG 1 cut(s) 631
PkrI GCNGC 2 cut(s) 461, 583
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
Ppu21I YACGTR 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 624
PspGI CCWGG 1 cut(s) 624
PstI CTGCAG 1 cut(s) 461
PsuI RGATCY 1 cut(s) 55
PteI GCGCGC 1 cut(s) 523
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 2 cut(s) 345, 480
SapI GCTCTTC 1 cut(s) 32
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 2 cut(s) 460, 582
Sau3AI GATC 1 cut(s) 55
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 2 cut(s) 626, 663
SduI GDGCHC 1 cut(s) 18
SfaNI GCATC 3 cut(s) 336, 381, 391
SfcI CTRYAG 2 cut(s) 457, 606
SmiMI CAYNNNNRTG 2 cut(s) 345, 480
StyD4I CCNGG 2 cut(s) 624, 661
StyI CCWWGG 3 cut(s) 432, 506, 557
TaaI ACNGT 1 cut(s) 619
TaiI ACGT 3 cut(s) 21, 30, 305
TatI WGTACW 1 cut(s) 30
TfiI GAWTC 5 cut(s) 141, 147, 198, 230, 273
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 1 cut(s) 106
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 2 cut(s) 459, 581
Tsp45I GTSAC 1 cut(s) 298
TspDTI ATGAA 3 cut(s) 307, 464, 651
TspRI CASTG 1 cut(s) 106
Van91I CCANNNNNTGG 1 cut(s) 631
VneI GTGCAC 1 cut(s) 14
XagI CCTNNNNNAGG 1 cut(s) 47
ZraI GACGTC 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.