Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002269

Physical Location & Seq

Genomic Coordinates Forward (+)

14172969 .. 14174093

Gene Structure 1125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007164

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGCCGACATGAACTGGATTATTGAAGTTAATGAAGATCTTAATAGGATGGAAGGTGTTTCTACAGAGGAGCAGTGGAAGGGGTCTATTTACAAACTTCCAGCCATCATCACAGACATAAACAAGAGCGCCTACAAGCCCCAGACAGTCTCCTTCGGCCCTTACCATTTCGATCATTCAAATCCGATGGAGAAGCACAAGCGTCATGCACTTGCTGAAGTAGTGGAAGATTTGAAGGACTCATACAATCCTCTCGAGCCAGTGGAGAGAGATACTGCAGCTAGATTTTTGCAACTCATGTTTCTGGATGGCTGTTTCATGCTTGAAATCTTGAAGACTGCTTCTCAGATACTTGATGATTATGCTCCTACTGATCCTATCTTCAGCAAGCACGGGAAGTTTCATGTCATGCCCTTCATCAAACGCGACATGTTAATGCCCGAGAATCAGTTGCCAATGCTTGTTCTTGTCAAGCTGGTCGCTGTTGAAACTGATAAAGCTAAGGATGAAGAATCTGTGAATAGACTCAAAGTAGAGTTCTGCTGCTCCTGCACAGTACTCCTGAACATGGGCAAGTGTGTGCTCGTATTGGACGTGTACAGGAAGAGCCTGCTTCAGGAAGATCCCCACCGAGCTTACAGAAGCCGGAATCAGATTCAAGAAAAGCAAATCTGCAAGCCTCAAAGACATCTTATTCTCTGGGGGAATCCTGAAGCTCCCACCATCATAGACAACCACAGAGATGTTGGCCTTCTGCAATCAAAAGGCACCATCCACAACTTTCTGGGAAGTGATGATGCAGTGGCTAAACTTTTGAACTCACTCTCCAAGGACATAACTCTTGACCCAGACTGCAGCCTTGATAAAGTTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

292

Amino Acids

33.33

Weight (kDa)

5.78

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	30 - 214	5.7e-31	Plant protein of unknown function
DUF247	PF03140	242 - 288	4.1e-08	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002269)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22070 FvH4_4g22070
malus_domestica	MD16G1130500.v1.1
prunus_persica	Prupe.1G210700_v2.0.a1
pyrus_communis	pycom16g11490
rosa_chinensis	RchiOBHm_Chr4g0427551 RchiOBHm_Chr4g0427561 RchiOBHm_Chr4g0428321 RchiOBHm_Chr4g0428331
rosa_laevigata	RLG00000007164 RLG00000007165 RLG00000007226 RLG00000007227
rosa_multiflora	Rmu_co8176162.1_g000001 Rmu_co8339473.1_g000001 Rmu_sc0007019.1_g000006 Rmu_sc0009627.1_g000005
rosa_roxburghii	Rroxscaffold_5G00369200 Rroxscaffold_5G00369220 Rroxscaffold_5G00369970
rosa_rugosa	Rorug04G0218500 Rorug04G0218600 Rorug04G0224700
rosa_samantha	Rh4AG275100 Rh4AG281300 Rh4AG281400 Rh4AG281500 Rh4BG280900 Rh4BG281000 Rh4BG286900 Rh4BG287000 Rh4BG287100 Rh4CG296200 Rh4CG302500 Rh4CG302600 Rh4CG302700 Rh4DG278300 Rh4DG284000 Rh4DG284100 Rh4DG284200
rosa_wichuraiana	Rw4G023850 Rw4G024430 Rw4G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	767
AccII	CGCG	1 cut(s)	426
AclWI	GGATC	2 cut(s)	368, 617
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	4 cut(s)	237, 367, 599, 732
AfaI	GTAC	2 cut(s)	558, 599
AfiI	CCNNNNNNNGG	2 cut(s)	568, 616
AflIII	ACRYGT	2 cut(s)	429, 594
AgsI	TTSAA	8 cut(s)	26, 180, 235, 326, 334, 488, 659, 817
AjiI	CACGTC	1 cut(s)	595
AloI	GAACNNNNNNTCC	2 cut(s)	809, 841
AluBI	AGCT	5 cut(s)	281, 475, 500, 635, 716
AluI	AGCT	5 cut(s)	281, 475, 500, 635, 716
Alw21I	GWGCWC	1 cut(s)	585
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	2 cut(s)	368, 617
Ama87I	CYCGRG	2 cut(s)	254, 440
AoxI	GGCC	3 cut(s)	3, 157, 748
ApeKI	GCWGC	3 cut(s)	278, 543, 855
AspLEI	GCGC	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	158
AvaI	CYCGRG	2 cut(s)	254, 440
BanI	GGYRCC	1 cut(s)	767
BarI	GAAGNNNNNNTAC	2 cut(s)	227, 259
BbsI	GAAGAC	1 cut(s)	341
Bbv12I	GWGCWC	1 cut(s)	585
BbvI	GCAGC	3 cut(s)	290, 530, 867
BccI	CCATC	6 cut(s)	43, 113, 181, 302, 731, 779
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	1 cut(s)	282
BfmI	CTRYAG	3 cut(s)	63, 276, 853
BfoI	RGCGCY	1 cut(s)	132
BglII	AGATCT	1 cut(s)	37
BisI	GCNGC	3 cut(s)	279, 544, 856
BlsI	GCNGC	3 cut(s)	280, 545, 857
BmcAI	AGTACT	1 cut(s)	558
BmeT110I	CYCGRG	2 cut(s)	254, 440
BmgBI	CACGTC	1 cut(s)	595
BmgT120I	GGNCC	1 cut(s)	158
BmiI	GGNNCC	1 cut(s)	769
BmsI	GCATC	1 cut(s)	787
BpiI	GAAGAC	1 cut(s)	341
Bpu10I	CCTNAGC	1 cut(s)	501
BsaJI	CCNNGG	1 cut(s)	828
BsaXI	ACNNNNNCTCC	2 cut(s)	809, 839
Bsc4I	CCNNNNNNNGG	2 cut(s)	568, 616
Bse1I	ACTGG	2 cut(s)	20, 260
BseDI	CCNNGG	1 cut(s)	828
BseGI	GGATG	4 cut(s)	54, 313, 511, 771
BseLI	CCNNNNNNNGG	2 cut(s)	568, 616
BseMII	CTCAG	1 cut(s)	359
BseNI	ACTGG	2 cut(s)	20, 260
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	3 cut(s)	290, 530, 867
BsgI	GTGCAG	1 cut(s)	535
Bsh1236I	CGCG	1 cut(s)	426
BshFI	GGCC	3 cut(s)	5, 159, 750
BshNI	GGYRCC	1 cut(s)	767
BsiHKAI	GWGCWC	1 cut(s)	585
BsiHKCI	CYCGRG	2 cut(s)	254, 440
BsiSI	CCGG	1 cut(s)	646
BslI	CCNNNNNNNGG	2 cut(s)	568, 616
BsmAI	GTCTC	1 cut(s)	154
BsnI	GGCC	3 cut(s)	5, 159, 750
BsoBI	CYCGRG	2 cut(s)	254, 440
Bsp1286I	GDGCHC	1 cut(s)	585
Bsp1407I	TGTACA	1 cut(s)	597
Bsp143I	GATC	4 cut(s)	37, 172, 373, 622
BspANI	GGCC	3 cut(s)	5, 159, 750
BspCNI	CTCAG	1 cut(s)	358
BspFNI	CGCG	1 cut(s)	426
BspLI	GGNNCC	1 cut(s)	769
BspMAI	CTGCAG	2 cut(s)	280, 857
BspPI	GGATC	2 cut(s)	368, 617
BspQI	GCTCTTC	1 cut(s)	599
BspT107I	GGYRCC	1 cut(s)	767
BsrGI	TGTACA	1 cut(s)	597
BsrI	ACTGG	2 cut(s)	20, 260
BssECI	CCNNGG	1 cut(s)	828
BssMI	GATC	4 cut(s)	37, 172, 373, 622
BssT1I	CCWWGG	1 cut(s)	828
Bst4CI	ACNGT	2 cut(s)	148, 556
Bst6I	CTCTTC	1 cut(s)	599
BstAUI	TGTACA	1 cut(s)	597
BstC8I	GCNNGC	3 cut(s)	389, 611, 677
BstDEI	CTNAG	2 cut(s)	345, 501
BstENI	CCTNNNNNAGG	1 cut(s)	614
BstF5I	GGATG	4 cut(s)	54, 313, 511, 771
BstFNI	CGCG	1 cut(s)	426
BstH2I	RGCGCY	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	4 cut(s)	40, 175, 376, 625
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	4 cut(s)	37, 172, 373, 622
BstMWI	GCNNNNNNNGC	1 cut(s)	549
BstNSI	RCATGY	1 cut(s)	433
BstSFI	CTRYAG	3 cut(s)	63, 276, 853
BstUI	CGCG	1 cut(s)	426
BstV1I	GCAGC	3 cut(s)	290, 530, 867
BstV2I	GAAGAC	1 cut(s)	341
BstX2I	RGATCY	2 cut(s)	37, 622
BstYI	RGATCY	2 cut(s)	37, 622
BsuRI	GGCC	3 cut(s)	5, 159, 750
BtrI	CACGTC	1 cut(s)	595
BtsCI	GGATG	4 cut(s)	54, 313, 511, 771
BtsI	GCAGTG	2 cut(s)	80, 807
BtsIMutI	CAGTG	3 cut(s)	80, 267, 807
Cac8I	GCNNGC	3 cut(s)	389, 611, 677
CfoI	GCGC	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	158
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	2 cut(s)	557, 598
CviAII	CATG	8 cut(s)	10, 206, 298, 319, 404, 409, 430, 568
CviQI	GTAC	2 cut(s)	557, 598
DdeI	CTNAG	2 cut(s)	345, 501
DpnI	GATC	4 cut(s)	39, 174, 375, 624
DpnII	GATC	4 cut(s)	37, 172, 373, 622
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	599
EarI	CTCTTC	1 cut(s)	599
Eco130I	CCWWGG	1 cut(s)	828
Eco57I	CTGAAG	4 cut(s)	237, 367, 599, 732
Eco88I	CYCGRG	2 cut(s)	254, 440
EcoNI	CCTNNNNNAGG	1 cut(s)	614
EcoT14I	CCWWGG	1 cut(s)	828
ErhI	CCWWGG	1 cut(s)	828
FaeI	CATG	8 cut(s)	13, 209, 301, 322, 407, 412, 433, 571
FatI	CATG	8 cut(s)	9, 205, 297, 318, 403, 408, 429, 567
Fnu4HI	GCNGC	3 cut(s)	279, 544, 856
FokI	GGATG	4 cut(s)	61, 320, 518, 758
Fsp4HI	GCNGC	3 cut(s)	279, 544, 856
FspBI	CTAG	1 cut(s)	282
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	3 cut(s)	279, 544, 856
HaeII	RGCGCY	1 cut(s)	132
HaeIII	GGCC	3 cut(s)	5, 159, 750
HapII	CCGG	1 cut(s)	646
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	1 cut(s)	131
Hin1II	CATG	8 cut(s)	13, 209, 301, 322, 407, 412, 433, 571
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HinfI	GANTC	7 cut(s)	239, 445, 512, 525, 649, 655, 706
HpaII	CCGG	1 cut(s)	646
Hpy166II	GTNNAC	2 cut(s)	598, 871
Hpy188I	TCNGA	3 cut(s)	186, 348, 654
Hpy188III	TCNNGA	8 cut(s)	254, 305, 331, 562, 617, 659, 710, 842
Hpy8I	GTNNAC	2 cut(s)	598, 871
HpyAV	CCTTC	6 cut(s)	47, 73, 163, 229, 424, 761
HpyCH4III	ACNGT	2 cut(s)	148, 556
HpyCH4IV	ACGT	1 cut(s)	594
HpyCH4V	TGCA	8 cut(s)	209, 278, 292, 552, 675, 757, 800, 855
HpyF10VI	GCNNNNNNNGC	1 cut(s)	549
HpyF3I	CTNAG	2 cut(s)	345, 501
HpySE526I	ACGT	1 cut(s)	594
Hsp92II	CATG	8 cut(s)	13, 209, 301, 322, 407, 412, 433, 571
HspAI	GCGC	1 cut(s)	129
Kzo9I	GATC	4 cut(s)	37, 172, 373, 622
LguI	GCTCTTC	1 cut(s)	599
LmnI	GCTCC	4 cut(s)	70, 370, 551, 721
Lsp1109I	GCAGC	3 cut(s)	290, 530, 867
LweI	GCATC	1 cut(s)	787
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	1 cut(s)	594
MalI	GATC	4 cut(s)	39, 174, 375, 624
MboI	GATC	4 cut(s)	37, 172, 373, 622
MboII	GAAGA	7 cut(s)	47, 239, 346, 373, 521, 616, 632
MflI	RGATCY	2 cut(s)	37, 622
MhlI	GDGCHC	1 cut(s)	585
MlyI	GAGTC	2 cut(s)	233, 519
MnlI	CCTC	3 cut(s)	61, 261, 690
MseI	TTAA	3 cut(s)	30, 42, 434
MslI	CAYNNNNRTG	2 cut(s)	434, 741
MspI	CCGG	1 cut(s)	646
MvnI	CGCG	1 cut(s)	426
MwoI	GCNNNNNNNGC	1 cut(s)	549
NdeII	GATC	4 cut(s)	37, 172, 373, 622
NlaIII	CATG	8 cut(s)	13, 209, 301, 322, 407, 412, 433, 571
NlaIV	GGNNCC	1 cut(s)	769
NspI	RCATGY	1 cut(s)	433
PaeR7I	CTCGAG	1 cut(s)	254
PciI	ACATGT	1 cut(s)	429
PciSI	GCTCTTC	1 cut(s)	599
PcsI	WCGNNNNNNNCGW	1 cut(s)	591
PfeI	GAWTC	5 cut(s)	445, 512, 649, 655, 706
PkrI	GCNGC	3 cut(s)	280, 545, 857
PleI	GAGTC	2 cut(s)	233, 519
PpsI	GAGTC	2 cut(s)	233, 519
PscI	ACATGT	1 cut(s)	429
PspN4I	GGNNCC	1 cut(s)	769
PspPI	GGNCC	1 cut(s)	158
PstI	CTGCAG	2 cut(s)	280, 857
PsuI	RGATCY	2 cut(s)	37, 622
RsaI	GTAC	2 cut(s)	558, 599
RsaNI	GTAC	2 cut(s)	557, 598
RseI	CAYNNNNRTG	2 cut(s)	434, 741
SapI	GCTCTTC	1 cut(s)	599
SaqAI	TTAA	3 cut(s)	30, 42, 434
SatI	GCNGC	3 cut(s)	279, 544, 856
Sau3AI	GATC	4 cut(s)	37, 172, 373, 622
Sau96I	GGNCC	1 cut(s)	158
ScaI	AGTACT	1 cut(s)	558
SchI	GAGTC	2 cut(s)	233, 519
SduI	GDGCHC	1 cut(s)	585
SetI	ASST	7 cut(s)	58, 283, 477, 502, 597, 637, 718
SfaNI	GCATC	1 cut(s)	787
SfcI	CTRYAG	3 cut(s)	63, 276, 853
Sfr274I	CTCGAG	1 cut(s)	254
SlaI	CTCGAG	1 cut(s)	254
SmiMI	CAYNNNNRTG	2 cut(s)	434, 741
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SspMI	CTAG	1 cut(s)	282
StyI	CCWWGG	1 cut(s)	828
TaaI	ACNGT	2 cut(s)	148, 556
TaiI	ACGT	1 cut(s)	597
TaqI	TCGA	2 cut(s)	171, 255
TatI	WGTACW	2 cut(s)	556, 597
TfiI	GAWTC	5 cut(s)	445, 512, 649, 655, 706
Tru1I	TTAA	3 cut(s)	30, 42, 434
Tru9I	TTAA	3 cut(s)	30, 42, 434
TscAI	CASTG	3 cut(s)	80, 267, 807
TseI	GCWGC	3 cut(s)	278, 543, 855
TspDTI	ATGAA	6 cut(s)	26, 48, 307, 392, 406, 522
TspRI	CASTG	3 cut(s)	80, 267, 807
XagI	CCTNNNNNAGG	1 cut(s)	614
XceI	RCATGY	1 cut(s)	433
XcmI	CCANNNNNNNNNTGG	1 cut(s)	743
XhoI	CTCGAG	1 cut(s)	254
XspI	CTAG	1 cut(s)	282
ZrmI	AGTACT	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.