Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002269

Physical Location & Seq

Genomic Coordinates Reverse (-)

50275283 .. 50276640

Gene Structure 1358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G024440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCTGACATGAACTGGATTATTGAAGTTAATGAAGATCTTAATAGGATGGAAGACATAAACAAGAAGGCCTACAAGCCCCAGACAGTCTCCTTCGGCCCTTACCATTTCAATCATTCAAATCCGATGGAGAAGCACAAGCGTCGTGTGCTGCTTCATTTCCTCAAAAGATGTGGAAAACCTCTTGGACTGTTTGCAGATGCACTTGCTGAAGTAGTGGAAGATTTGAAGGACTCATACAATCCTCTCGAGCCAGTGTGGAGAGATAATACAGCTAGATTTTTGCAACTCATGTTTCTGGATGGCTGTTTCATGCTTGAAATCTTGAGGACTGCTTCTCATATACTTGATGATTATGCTCCTACTGATCCTATCTTCAGCAAGCACGGGAAGTTTCATGTCATGCCCTTCATCAAACGCGACATGTTAATGCTCGAGAATCAGTTGCCAATGCTTGTTCTTGTCAAGCTGGTTGCAGTTGAAACTGATAAAGCTAAGCTCCCACTTATGGTTGTGGATGATTCAACCGAGTCCACGTTCTTGAATATGACAGCATTTGAGAGATTCCATGTTGGAGCAGGAAATGAGGTGACGTCTTACATATTCTTCATGGACAGCATCATAGACAATCACAGAGATGTTGGCCTCCTGCAATCAAAAGGCATCATCCACAACTTTCTGGGAAGTGATGATGCCGTGGCTGAACTTTTGAACTCACTCTCCAAGGATATAACTCTTGACCCACACTGCAGCCTTGATAAAGTTCATAAAAGTGTCTATCACGACTGCAAGAAGCCTTGGAATAACGAGTGGCGCGCTAATCTTATCCAGACTTATTTCAGAAATCCATGGGCTATTATATCTCTTTTTGCAGCAATCTTGCTCTTTGTGCTTACTATAGCTCAGACTGTTACCCAGGTTATGGATGAAATAGCTCCCTCCTCTTCAGAACCGGGGTCTCCTCCTCCACTTAAGGTGTCTTCAAATCGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

331

Amino Acids

37.81

Weight (kDa)

5.9

Isoelectric Point (pI)

35.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	9 - 162	3.5e-38	Plant protein of unknown function
DUF247	PF03140	165 - 298	1.7e-43	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002269)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22070 FvH4_4g22070
malus_domestica	MD16G1130500.v1.1
prunus_persica	Prupe.1G210700_v2.0.a1
pyrus_communis	pycom16g11490
rosa_chinensis	RchiOBHm_Chr4g0427551 RchiOBHm_Chr4g0427561 RchiOBHm_Chr4g0428321 RchiOBHm_Chr4g0428331
rosa_laevigata	RLG00000007164 RLG00000007165 RLG00000007226 RLG00000007227
rosa_multiflora	Rmu_co8176162.1_g000001 Rmu_co8339473.1_g000001 Rmu_sc0007019.1_g000006 Rmu_sc0009627.1_g000005
rosa_roxburghii	Rroxscaffold_5G00369200 Rroxscaffold_5G00369220 Rroxscaffold_5G00369970
rosa_rugosa	Rorug04G0218500 Rorug04G0218600 Rorug04G0224700
rosa_samantha	Rh4AG275100 Rh4AG281300 Rh4AG281400 Rh4AG281500 Rh4BG280900 Rh4BG281000 Rh4BG286900 Rh4BG287000 Rh4BG287100 Rh4CG296200 Rh4CG302500 Rh4CG302600 Rh4CG302700 Rh4DG278300 Rh4DG284000 Rh4DG284100 Rh4DG284200
rosa_wichuraiana	Rw4G023850 Rw4G024430 Rw4G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	596
AccB7I	CCANNNNNTGG	1 cut(s)	922
AccII	CGCG	2 cut(s)	420, 816
AclWI	GGATC	1 cut(s)	362
AcuI	CTGAAG	3 cut(s)	231, 361, 930
AcyI	GRCGYC	1 cut(s)	593
AfiI	CCNNNNNNNGG	2 cut(s)	508, 922
AflII	CTTAAG	1 cut(s)	971
AflIII	ACRYGT	1 cut(s)	423
AjnI	CCWGG	1 cut(s)	915
AloI	GAACNNNNNNTCC	2 cut(s)	704, 736
AluBI	AGCT	6 cut(s)	275, 469, 494, 499, 902, 935
AluI	AGCT	6 cut(s)	275, 469, 494, 499, 902, 935
Alw26I	GTCTC	2 cut(s)	94, 963
AlwI	GGATC	1 cut(s)	362
Ama87I	CYCGRG	2 cut(s)	248, 434
AoxI	GGCC	3 cut(s)	69, 97, 643
ApeKI	GCWGC	3 cut(s)	151, 750, 872
AspLEI	GCGC	2 cut(s)	816, 818
AspS9I	GGNCC	1 cut(s)	98
AsuC2I	CCSGG	1 cut(s)	954
AsuHPI	GGTGA	1 cut(s)	601
AvaI	CYCGRG	2 cut(s)	248, 434
BarI	GAAGNNNNNNTAC	2 cut(s)	221, 253
BbsI	GAAGAC	2 cut(s)	60, 972
BbvI	GCAGC	3 cut(s)	138, 762, 884
BccI	CCATC	3 cut(s)	43, 121, 296
BceAI	ACGGC	1 cut(s)	680
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BciT130I	CCWGG	1 cut(s)	917
BcnI	CCSGG	1 cut(s)	954
BcoDI	GTCTC	2 cut(s)	94, 963
BfaI	CTAG	1 cut(s)	276
BfmI	CTRYAG	2 cut(s)	748, 897
BfrI	CTTAAG	1 cut(s)	971
BglII	AGATCT	1 cut(s)	37
BisI	GCNGC	3 cut(s)	152, 751, 873
BlpI	GCTNAGC	1 cut(s)	495
BlsI	GCNGC	3 cut(s)	153, 752, 874
Bme1390I	CCNGG	2 cut(s)	917, 954
BmeT110I	CYCGRG	2 cut(s)	248, 434
BmgT120I	GGNCC	1 cut(s)	98
BmrFI	CCNGG	2 cut(s)	917, 954
BmsI	GCATC	4 cut(s)	190, 627, 672, 682
BpiI	GAAGAC	2 cut(s)	60, 972
Bpu1102I	GCTNAGC	1 cut(s)	495
BpuEI	CTTGAG	1 cut(s)	346
BpuMI	CCSGG	1 cut(s)	954
BsaHI	GRCGYC	1 cut(s)	593
BsaI	GGTCTC	1 cut(s)	963
BsaJI	CCNNGG	6 cut(s)	696, 723, 797, 848, 915, 953
BsaXI	ACNNNNNCTCC	2 cut(s)	704, 734
Bsc4I	CCNNNNNNNGG	2 cut(s)	508, 922
Bse1I	ACTGG	2 cut(s)	20, 254
BseBI	CCWGG	1 cut(s)	917
BseDI	CCNNGG	6 cut(s)	696, 723, 797, 848, 915, 953
BseGI	GGATG	5 cut(s)	54, 307, 523, 666, 931
BseLI	CCNNNNNNNGG	2 cut(s)	508, 922
BseMII	CTCAG	1 cut(s)	917
BseNI	ACTGG	2 cut(s)	20, 254
BsePI	GCGCGC	1 cut(s)	814
BseRI	GAGGAG	3 cut(s)	931, 951, 954
BseXI	GCAGC	3 cut(s)	138, 762, 884
Bsh1236I	CGCG	2 cut(s)	420, 816
BshFI	GGCC	3 cut(s)	71, 99, 645
BsiHKCI	CYCGRG	2 cut(s)	248, 434
BsiSI	CCGG	1 cut(s)	953
BslI	CCNNNNNNNGG	2 cut(s)	508, 922
BsmAI	GTCTC	2 cut(s)	94, 963
BsnI	GGCC	3 cut(s)	71, 99, 645
Bso31I	GGTCTC	1 cut(s)	963
BsoBI	CYCGRG	2 cut(s)	248, 434
Bsp143I	GATC	2 cut(s)	37, 367
Bsp1720I	GCTNAGC	1 cut(s)	495
Bsp19I	CCATGG	1 cut(s)	848
BspANI	GGCC	3 cut(s)	71, 99, 645
BspCNI	CTCAG	1 cut(s)	916
BspFNI	CGCG	2 cut(s)	420, 816
BspMAI	CTGCAG	1 cut(s)	752
BspPI	GGATC	1 cut(s)	362
BspTI	CTTAAG	1 cut(s)	971
BspTNI	GGTCTC	1 cut(s)	963
BsrI	ACTGG	2 cut(s)	20, 254
BssECI	CCNNGG	6 cut(s)	696, 723, 797, 848, 915, 953
BssHII	GCGCGC	1 cut(s)	814
BssMI	GATC	2 cut(s)	37, 367
BssNI	GRCGYC	1 cut(s)	593
BssT1I	CCWWGG	3 cut(s)	723, 797, 848
Bst2UI	CCWGG	1 cut(s)	917
Bst4CI	ACNGT	3 cut(s)	88, 192, 910
Bst6I	CTCTTC	1 cut(s)	949
BstACI	GRCGYC	1 cut(s)	593
BstAFI	CTTAAG	1 cut(s)	971
BstC8I	GCNNGC	2 cut(s)	383, 816
BstDEI	CTNAG	2 cut(s)	495, 903
BstDSI	CCRYGG	2 cut(s)	696, 848
BstF5I	GGATG	5 cut(s)	54, 307, 523, 666, 931
BstFNI	CGCG	2 cut(s)	420, 816
BstHHI	GCGC	2 cut(s)	816, 818
BstKTI	GATC	2 cut(s)	40, 370
BstMAI	GTCTC	2 cut(s)	94, 963
BstMBI	GATC	2 cut(s)	37, 367
BstMWI	GCNNNNNNNGC	2 cut(s)	148, 889
BstNI	CCWGG	1 cut(s)	917
BstNSI	RCATGY	1 cut(s)	427
BstSCI	CCNGG	2 cut(s)	915, 952
BstSFI	CTRYAG	2 cut(s)	748, 897
BstUI	CGCG	2 cut(s)	420, 816
BstV1I	GCAGC	3 cut(s)	138, 762, 884
BstV2I	GAAGAC	2 cut(s)	60, 972
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
BsuRI	GGCC	3 cut(s)	71, 99, 645
BtgI	CCRYGG	2 cut(s)	696, 848
BtsCI	GGATG	5 cut(s)	54, 307, 523, 666, 931
BtsI	GCAGTG	1 cut(s)	745
BtsIMutI	CAGTG	2 cut(s)	261, 745
Cac8I	GCNNGC	2 cut(s)	383, 816
CfoI	GCGC	2 cut(s)	816, 818
Cfr13I	GGNCC	1 cut(s)	98
CseI	GACGC	1 cut(s)	131
CspCI	CAANNNNNGTGG	2 cut(s)	154, 189
CviAII	CATG	9 cut(s)	10, 292, 313, 398, 403, 424, 569, 610, 849
DdeI	CTNAG	2 cut(s)	495, 903
DpnI	GATC	2 cut(s)	39, 369
DpnII	GATC	2 cut(s)	37, 367
Eam1104I	CTCTTC	1 cut(s)	949
EarI	CTCTTC	1 cut(s)	949
Eco130I	CCWWGG	3 cut(s)	723, 797, 848
Eco147I	AGGCCT	1 cut(s)	71
Eco31I	GGTCTC	1 cut(s)	963
Eco57I	CTGAAG	3 cut(s)	231, 361, 930
Eco88I	CYCGRG	2 cut(s)	248, 434
EcoRII	CCWGG	1 cut(s)	915
EcoT14I	CCWWGG	3 cut(s)	723, 797, 848
ErhI	CCWWGG	3 cut(s)	723, 797, 848
FaeI	CATG	9 cut(s)	13, 295, 316, 401, 406, 427, 572, 613, 852
FatI	CATG	9 cut(s)	9, 291, 312, 397, 402, 423, 568, 609, 848
Fnu4HI	GCNGC	3 cut(s)	152, 751, 873
FokI	GGATG	5 cut(s)	61, 314, 530, 653, 938
Fsp4HI	GCNGC	3 cut(s)	152, 751, 873
FspBI	CTAG	1 cut(s)	276
GlaI	GCGC	2 cut(s)	815, 817
GluI	GCNGC	3 cut(s)	152, 751, 873
HaeIII	GGCC	3 cut(s)	71, 99, 645
HapII	CCGG	1 cut(s)	953
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	2 cut(s)	816, 818
Hin1I	GRCGYC	1 cut(s)	593
Hin1II	CATG	9 cut(s)	13, 295, 316, 401, 406, 427, 572, 613, 852
Hin6I	GCGC	2 cut(s)	814, 816
HinP1I	GCGC	2 cut(s)	814, 816
HinfI	GANTC	5 cut(s)	233, 439, 521, 530, 564
HpaII	CCGG	1 cut(s)	953
HphI	GGTGA	1 cut(s)	601
Hpy166II	GTNNAC	1 cut(s)	534
Hpy188I	TCNGA	4 cut(s)	126, 842, 906, 949
Hpy188III	TCNNGA	8 cut(s)	248, 299, 325, 436, 541, 737, 782, 829
Hpy8I	GTNNAC	1 cut(s)	534
Hpy99I	CGWCG	1 cut(s)	147
HpyAV	CCTTC	4 cut(s)	61, 103, 223, 418
HpyCH4III	ACNGT	3 cut(s)	88, 192, 910
HpyCH4IV	ACGT	2 cut(s)	536, 593
HpyCH4V	TGCA	9 cut(s)	197, 203, 286, 476, 652, 750, 789, 872, 992
HpyF10VI	GCNNNNNNNGC	2 cut(s)	148, 889
HpyF3I	CTNAG	2 cut(s)	495, 903
HpySE526I	ACGT	2 cut(s)	536, 593
Hsp92I	GRCGYC	1 cut(s)	593
Hsp92II	CATG	9 cut(s)	13, 295, 316, 401, 406, 427, 572, 613, 852
HspAI	GCGC	2 cut(s)	814, 816
Kzo9I	GATC	2 cut(s)	37, 367
LmnI	GCTCC	4 cut(s)	364, 504, 575, 940
Lsp1109I	GCAGC	3 cut(s)	138, 762, 884
LweI	GCATC	4 cut(s)	190, 627, 672, 682
MaeI	CTAG	1 cut(s)	276
MaeII	ACGT	2 cut(s)	536, 593
MaeIII	GTNAC	2 cut(s)	589, 910
MalI	GATC	2 cut(s)	39, 369
MboI	GATC	2 cut(s)	37, 367
MboII	GAAGA	7 cut(s)	47, 65, 233, 367, 598, 936, 972
MflI	RGATCY	1 cut(s)	37
MlyI	GAGTC	2 cut(s)	227, 539
MmeI	TCCRAC	1 cut(s)	553
MseI	TTAA	4 cut(s)	30, 42, 428, 972
MslI	CAYNNNNRTG	3 cut(s)	428, 636, 771
MspCI	CTTAAG	1 cut(s)	971
MspI	CCGG	1 cut(s)	953
MspR9I	CCNGG	2 cut(s)	917, 954
MvaI	CCWGG	1 cut(s)	917
MvnI	CGCG	2 cut(s)	420, 816
MwoI	GCNNNNNNNGC	2 cut(s)	148, 889
NciI	CCSGG	1 cut(s)	954
NcoI	CCATGG	1 cut(s)	848
NdeII	GATC	2 cut(s)	37, 367
NlaIII	CATG	9 cut(s)	13, 295, 316, 401, 406, 427, 572, 613, 852
NmuCI	GTSAC	1 cut(s)	589
NspI	RCATGY	1 cut(s)	427
PaeR7I	CTCGAG	2 cut(s)	248, 434
PauI	GCGCGC	1 cut(s)	814
PceI	AGGCCT	1 cut(s)	71
PciI	ACATGT	1 cut(s)	423
PfeI	GAWTC	3 cut(s)	439, 521, 564
PflMI	CCANNNNNTGG	1 cut(s)	922
PkrI	GCNGC	3 cut(s)	153, 752, 874
PleI	GAGTC	2 cut(s)	227, 538
PpsI	GAGTC	2 cut(s)	227, 538
PscI	ACATGT	1 cut(s)	423
Psp6I	CCWGG	1 cut(s)	915
PspGI	CCWGG	1 cut(s)	915
PspPI	GGNCC	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	752
PsuI	RGATCY	1 cut(s)	37
PteI	GCGCGC	1 cut(s)	814
RseI	CAYNNNNRTG	3 cut(s)	428, 636, 771
SaqAI	TTAA	4 cut(s)	30, 42, 428, 972
SatI	GCNGC	3 cut(s)	152, 751, 873
Sau3AI	GATC	2 cut(s)	37, 367
Sau96I	GGNCC	1 cut(s)	98
SchI	GAGTC	2 cut(s)	227, 539
ScrFI	CCNGG	2 cut(s)	917, 954
SfaNI	GCATC	4 cut(s)	190, 627, 672, 682
SfcI	CTRYAG	2 cut(s)	748, 897
Sfr274I	CTCGAG	2 cut(s)	248, 434
SlaI	CTCGAG	2 cut(s)	248, 434
SmiMI	CAYNNNNRTG	3 cut(s)	428, 636, 771
SmlI	CTYRAG	4 cut(s)	248, 325, 434, 971
SmoI	CTYRAG	4 cut(s)	248, 325, 434, 971
SseBI	AGGCCT	1 cut(s)	71
SspMI	CTAG	1 cut(s)	276
StuI	AGGCCT	1 cut(s)	71
StyD4I	CCNGG	2 cut(s)	915, 952
StyI	CCWWGG	3 cut(s)	723, 797, 848
TaaI	ACNGT	3 cut(s)	88, 192, 910
TaiI	ACGT	2 cut(s)	539, 596
TaqI	TCGA	2 cut(s)	249, 435
TfiI	GAWTC	3 cut(s)	439, 521, 564
Tru1I	TTAA	4 cut(s)	30, 42, 428, 972
Tru9I	TTAA	4 cut(s)	30, 42, 428, 972
TscAI	CASTG	2 cut(s)	261, 752
TseFI	GTSAC	1 cut(s)	589
TseI	GCWGC	3 cut(s)	151, 750, 872
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	9 cut(s)	26, 48, 146, 301, 386, 400, 598, 755, 942
TspRI	CASTG	2 cut(s)	261, 752
Van91I	CCANNNNNTGG	1 cut(s)	922
Vha464I	CTTAAG	1 cut(s)	971
XceI	RCATGY	1 cut(s)	427
XhoI	CTCGAG	2 cut(s)	248, 434
XspI	CTAG	1 cut(s)	276
ZraI	GACGTC	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.