Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8339473.1

Orthogroup ID

OG0002269

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 971

Gene Structure 970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8339473.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atggagaagcacaagcgtcgtgtgctgcttcatttcctcaaaagatgtggaaaacctgttggactgtttgcagatgcacttgctgaagtagtggaagatttgaaggactcctacaatcctctcgagccagtgtggagagataatacagctagatttttgcaactcatgtttctggatggctgtttcatgcttgaaatcttgaggactgcttctcatatacttgatgattatgctcctactgatcctatcttcagcaagcaagggaagtttcatgtcatgcccttcatcaaacgcgacatgttaatgctcgagaatcagttgccaatgcttgttcttgtcaagctggttgcagttgaaactgataaagctaagattcatagtaaagttctgctgctcctgcacagtcccctgaacatgggaaagtgtgtgcacgtattggacgtgtacaggaagagcctgcttcaggaagatccccaccagaaaatagttcgccacagagcatctgtgaatggcaatgcgatcatctggtctgcaacagagcttaaagaagccggaatcagattcaagaaaagcaaatcttcaagcctcaaagacatctcattctcttggggaatcctgaagctcccacttatggttgtggatgattcaaccgagtccatgttcttgaatatgacagcatttgagagattccatgttggagcaggaaatgaggtgacgtcttacatattcttcatggacagcatcatagacaatcacagagatgttggcctcctgcaatcaaaaggcatcatccacaactttctgggaagtgatgatgccgtggctaaacttttgaactcactctccaaggatataactcttgaccca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

289

Amino Acids

32.86

Weight (kDa)

8.32

Isoelectric Point (pI)

31.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002269)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22070 FvH4_4g22070
malus_domestica	MD16G1130500.v1.1
prunus_persica	Prupe.1G210700_v2.0.a1
pyrus_communis	pycom16g11490
rosa_chinensis	RchiOBHm_Chr4g0427551 RchiOBHm_Chr4g0427561 RchiOBHm_Chr4g0428321 RchiOBHm_Chr4g0428331
rosa_laevigata	RLG00000007164 RLG00000007165 RLG00000007226 RLG00000007227
rosa_multiflora	Rmu_co8176162.1_g000001 Rmu_co8339473.1_g000001 Rmu_sc0007019.1_g000006 Rmu_sc0009627.1_g000005
rosa_roxburghii	Rroxscaffold_5G00369200 Rroxscaffold_5G00369220 Rroxscaffold_5G00369970
rosa_rugosa	Rorug04G0218500 Rorug04G0218600 Rorug04G0224700
rosa_samantha	Rh4AG275100 Rh4AG281300 Rh4AG281400 Rh4AG281500 Rh4BG280900 Rh4BG281000 Rh4BG286900 Rh4BG287000 Rh4BG287100 Rh4CG296200 Rh4CG302500 Rh4CG302600 Rh4CG302700 Rh4DG278300 Rh4DG284000 Rh4DG284100 Rh4DG284200
rosa_wichuraiana	Rw4G023850 Rw4G024430 Rw4G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	719
AccII	CGCG	1 cut(s)	294
AclWI	GGATC	2 cut(s)	236, 464
AcuI	CTGAAG	4 cut(s)	105, 235, 446, 638
AcyI	GRCGYC	1 cut(s)	716
AfaI	GTAC	1 cut(s)	446
AfiI	CCNNNNNNNGG	3 cut(s)	415, 463, 631
AflIII	ACRYGT	2 cut(s)	297, 441
AgsI	TTSAA	8 cut(s)	103, 194, 356, 565, 582, 648, 667, 835
AjiI	CACGTC	1 cut(s)	442
AloI	GAACNNNNNNTCC	2 cut(s)	827, 859
AluBI	AGCT	5 cut(s)	149, 343, 368, 541, 622
AluI	AGCT	5 cut(s)	149, 343, 368, 541, 622
Alw21I	GWGCWC	1 cut(s)	432
Alw44I	GTGCAC	1 cut(s)	428
AlwI	GGATC	2 cut(s)	236, 464
Ama87I	CYCGRG	2 cut(s)	122, 308
AoxI	GGCC	1 cut(s)	766
ApaLI	GTGCAC	1 cut(s)	428
ApeKI	GCWGC	2 cut(s)	25, 391
AsuHPI	GGTGA	1 cut(s)	724
AvaI	CYCGRG	2 cut(s)	122, 308
BaeGI	GKGCMC	1 cut(s)	432
BarI	GAAGNNNNNNTAC	2 cut(s)	95, 127
Bbv12I	GWGCWC	1 cut(s)	432
BbvI	GCAGC	2 cut(s)	12, 378
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	1 cut(s)	803
BcgI	CGANNNNNNTGC	1 cut(s)	33
BfaI	CTAG	1 cut(s)	150
BisI	GCNGC	2 cut(s)	26, 392
BlsI	GCNGC	2 cut(s)	27, 393
BmeT110I	CYCGRG	2 cut(s)	122, 308
BmgBI	CACGTC	1 cut(s)	442
BmsI	GCATC	5 cut(s)	64, 509, 750, 795, 805
BpuEI	CTTGAG	1 cut(s)	220
BsaAI	YACGTR	1 cut(s)	433
BsaHI	GRCGYC	1 cut(s)	716
BsaJI	CCNNGG	2 cut(s)	819, 846
BsaXI	ACNNNNNCTCC	2 cut(s)	827, 857
Bsc4I	CCNNNNNNNGG	3 cut(s)	415, 463, 631
Bse1I	ACTGG	1 cut(s)	128
Bse3DI	GCAATG	1 cut(s)	520
BseDI	CCNNGG	2 cut(s)	819, 846
BseGI	GGATG	3 cut(s)	181, 646, 789
BseLI	CCNNNNNNNGG	3 cut(s)	415, 463, 631
BseMI	GCAATG	1 cut(s)	520
BseNI	ACTGG	1 cut(s)	128
BseSI	GKGCMC	1 cut(s)	432
BseXI	GCAGC	2 cut(s)	12, 378
BsgI	GTGCAG	1 cut(s)	383
Bsh1236I	CGCG	1 cut(s)	294
BshFI	GGCC	1 cut(s)	768
BsiHKAI	GWGCWC	1 cut(s)	432
BsiHKCI	CYCGRG	2 cut(s)	122, 308
BsiSI	CCGG	1 cut(s)	552
BslFI	GGGAC	1 cut(s)	390
BslI	CCNNNNNNNGG	3 cut(s)	415, 463, 631
BsmFI	GGGAC	1 cut(s)	390
BsnI	GGCC	1 cut(s)	768
BsoBI	CYCGRG	2 cut(s)	122, 308
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp1407I	TGTACA	1 cut(s)	444
Bsp143I	GATC	3 cut(s)	241, 469, 519
BspANI	GGCC	1 cut(s)	768
BspFNI	CGCG	1 cut(s)	294
BspPI	GGATC	2 cut(s)	236, 464
BspQI	GCTCTTC	1 cut(s)	446
BsrDI	GCAATG	1 cut(s)	520
BsrGI	TGTACA	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	128
BssECI	CCNNGG	2 cut(s)	819, 846
BssMI	GATC	3 cut(s)	241, 469, 519
BssNI	GRCGYC	1 cut(s)	716
BssT1I	CCWWGG	1 cut(s)	846
Bst4CI	ACNGT	2 cut(s)	66, 404
Bst6I	CTCTTC	1 cut(s)	446
BstACI	GRCGYC	1 cut(s)	716
BstAUI	TGTACA	1 cut(s)	444
BstBAI	YACGTR	1 cut(s)	433
BstC8I	GCNNGC	2 cut(s)	257, 458
BstDEI	CTNAG	1 cut(s)	369
BstDSI	CCRYGG	1 cut(s)	819
BstENI	CCTNNNNNAGG	1 cut(s)	461
BstF5I	GGATG	3 cut(s)	181, 646, 789
BstFNI	CGCG	1 cut(s)	294
BstKTI	GATC	3 cut(s)	244, 472, 522
BstMBI	GATC	3 cut(s)	241, 469, 519
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 397
BstNSI	RCATGY	1 cut(s)	301
BstSLI	GKGCMC	1 cut(s)	432
BstUI	CGCG	1 cut(s)	294
BstV1I	GCAGC	2 cut(s)	12, 378
BstX2I	RGATCY	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	469
BsuRI	GGCC	1 cut(s)	768
BtgI	CCRYGG	1 cut(s)	819
BtrI	CACGTC	1 cut(s)	442
BtsCI	GGATG	3 cut(s)	181, 646, 789
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	2 cut(s)	257, 458
CseI	GACGC	1 cut(s)	5
Csp6I	GTAC	1 cut(s)	445
CspCI	CAANNNNNGTGG	2 cut(s)	28, 63
CviAII	CATG	9 cut(s)	166, 187, 272, 277, 298, 415, 658, 692, 733
CviQI	GTAC	1 cut(s)	445
DdeI	CTNAG	1 cut(s)	369
DpnI	GATC	3 cut(s)	243, 471, 521
DpnII	GATC	3 cut(s)	241, 469, 519
Eam1104I	CTCTTC	1 cut(s)	446
EarI	CTCTTC	1 cut(s)	446
Eco130I	CCWWGG	1 cut(s)	846
Eco57I	CTGAAG	4 cut(s)	105, 235, 446, 638
Eco88I	CYCGRG	2 cut(s)	122, 308
EcoNI	CCTNNNNNAGG	1 cut(s)	461
EcoT14I	CCWWGG	1 cut(s)	846
ErhI	CCWWGG	1 cut(s)	846
FaeI	CATG	9 cut(s)	169, 190, 275, 280, 301, 418, 661, 695, 736
FalI	AAGNNNNNCTT	2 cut(s)	562, 594
FaqI	GGGAC	1 cut(s)	390
FatI	CATG	9 cut(s)	165, 186, 271, 276, 297, 414, 657, 691, 732
Fnu4HI	GCNGC	2 cut(s)	26, 392
FokI	GGATG	3 cut(s)	188, 653, 776
Fsp4HI	GCNGC	2 cut(s)	26, 392
FspBI	CTAG	1 cut(s)	150
GluI	GCNGC	2 cut(s)	26, 392
HaeIII	GGCC	1 cut(s)	768
HapII	CCGG	1 cut(s)	552
HgaI	GACGC	1 cut(s)	5
Hin1I	GRCGYC	1 cut(s)	716
Hin1II	CATG	9 cut(s)	169, 190, 275, 280, 301, 418, 661, 695, 736
HinfI	GANTC	9 cut(s)	107, 313, 373, 555, 561, 612, 644, 653, 687
HpaII	CCGG	1 cut(s)	552
HphI	GGTGA	1 cut(s)	724
Hpy166II	GTNNAC	2 cut(s)	430, 445
Hpy188I	TCNGA	1 cut(s)	560
Hpy188III	TCNNGA	9 cut(s)	122, 173, 199, 310, 464, 565, 616, 664, 860
Hpy8I	GTNNAC	2 cut(s)	430, 445
Hpy99I	CGWCG	1 cut(s)	21
HpyAV	CCTTC	2 cut(s)	97, 292
HpyCH4III	ACNGT	2 cut(s)	66, 404
HpyCH4IV	ACGT	3 cut(s)	432, 441, 716
HpyCH4V	TGCA	8 cut(s)	71, 77, 160, 350, 400, 430, 533, 775
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 397
HpyF3I	CTNAG	1 cut(s)	369
HpySE526I	ACGT	3 cut(s)	432, 441, 716
Hsp92I	GRCGYC	1 cut(s)	716
Hsp92II	CATG	9 cut(s)	169, 190, 275, 280, 301, 418, 661, 695, 736
Kzo9I	GATC	3 cut(s)	241, 469, 519
LguI	GCTCTTC	1 cut(s)	446
LmnI	GCTCC	4 cut(s)	238, 399, 627, 698
Lsp1109I	GCAGC	2 cut(s)	12, 378
LweI	GCATC	5 cut(s)	64, 509, 750, 795, 805
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	3 cut(s)	432, 441, 716
MaeIII	GTNAC	1 cut(s)	712
MalI	GATC	3 cut(s)	243, 471, 521
MboI	GATC	3 cut(s)	241, 469, 519
MboII	GAAGA	6 cut(s)	107, 241, 463, 479, 570, 721
MflI	RGATCY	1 cut(s)	469
MhlI	GDGCHC	1 cut(s)	432
MlyI	GAGTC	2 cut(s)	101, 662
MmeI	TCCRAC	2 cut(s)	40, 676
MnlI	CCTC	6 cut(s)	47, 129, 195, 596, 703, 779
MseI	TTAA	2 cut(s)	302, 543
MslI	CAYNNNNRTG	2 cut(s)	302, 759
MspI	CCGG	1 cut(s)	552
MvnI	CGCG	1 cut(s)	294
MwoI	GCNNNNNNNGC	2 cut(s)	22, 397
NdeII	GATC	3 cut(s)	241, 469, 519
NlaIII	CATG	9 cut(s)	169, 190, 275, 280, 301, 418, 661, 695, 736
NmuCI	GTSAC	1 cut(s)	712
NspI	RCATGY	1 cut(s)	301
PaeR7I	CTCGAG	2 cut(s)	122, 308
PciI	ACATGT	1 cut(s)	297
PciSI	GCTCTTC	1 cut(s)	446
PcsI	WCGNNNNNNNCGW	1 cut(s)	438
PfeI	GAWTC	7 cut(s)	313, 373, 555, 561, 612, 644, 687
PkrI	GCNGC	2 cut(s)	27, 393
PleI	GAGTC	2 cut(s)	101, 661
PpsI	GAGTC	2 cut(s)	101, 661
Ppu21I	YACGTR	1 cut(s)	433
PscI	ACATGT	1 cut(s)	297
PsuI	RGATCY	1 cut(s)	469
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
RseI	CAYNNNNRTG	2 cut(s)	302, 759
SapI	GCTCTTC	1 cut(s)	446
SaqAI	TTAA	2 cut(s)	302, 543
SatI	GCNGC	2 cut(s)	26, 392
Sau3AI	GATC	3 cut(s)	241, 469, 519
SchI	GAGTC	2 cut(s)	101, 662
SduI	GDGCHC	1 cut(s)	432
SfaNI	GCATC	5 cut(s)	64, 509, 750, 795, 805
Sfr274I	CTCGAG	2 cut(s)	122, 308
SlaI	CTCGAG	2 cut(s)	122, 308
SmiMI	CAYNNNNRTG	2 cut(s)	302, 759
SmlI	CTYRAG	3 cut(s)	122, 199, 308
SmoI	CTYRAG	3 cut(s)	122, 199, 308
SspMI	CTAG	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	846
TaaI	ACNGT	2 cut(s)	66, 404
TaiI	ACGT	3 cut(s)	435, 444, 719
TaqI	TCGA	2 cut(s)	123, 309
TatI	WGTACW	1 cut(s)	444
TfiI	GAWTC	7 cut(s)	313, 373, 555, 561, 612, 644, 687
Tru1I	TTAA	2 cut(s)	302, 543
Tru9I	TTAA	2 cut(s)	302, 543
TscAI	CASTG	1 cut(s)	135
TseFI	GTSAC	1 cut(s)	712
TseI	GCWGC	2 cut(s)	25, 391
Tsp45I	GTSAC	1 cut(s)	712
TspDTI	ATGAA	6 cut(s)	20, 175, 260, 274, 365, 721
TspRI	CASTG	1 cut(s)	135
VneI	GTGCAC	1 cut(s)	428
XagI	CCTNNNNNAGG	1 cut(s)	461
XceI	RCATGY	1 cut(s)	301
XhoI	CTCGAG	2 cut(s)	122, 308
XspI	CTAG	1 cut(s)	150
ZraI	GACGTC	1 cut(s)	717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.