Rh4BG287100

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0002269
Physical Location & Seq
Reverse (-)
46023496 .. 46024838
1343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG287100.1

Sequence Viewer

Length: 1260 bp
ATGGCTGACATGAACTGGATTATTGAAGTTAATGAAGATCTTAATAGGATGGAAGGAGCAGTGGAAGGGGTCTATTTACAAACTTCCAGCCGGCATTGCAGACATAAACAAGAAGGCCTACAAGCCCCAGACAGTCTCCTTCGGCCCTCACACTTCCTCAAAAGATGTGGAAAACCTGTTGAACTGTTTGCAGATGCACTTGCTGAAGTAGTGGAAGATTTGAAGGACTCATACAATCCTCTCGAGCCAGTGTGGAGAGATAATACAGCTAGATTTTTGCAACTCATGTTTCTGGATGGCTGTTTCATGCTTGAAATCTTGAGGACTGCTTCTCATATACTTGATGATTATGCTCCTACTGATCCTATCTTCAGCAAGCACGGGAAGTTTCATGTCATGCCCTTCATCAAACGCGACATGTTAATGCTCGAGAATCAGTTGCCAATGCTTGTTCTTGTCAAGCTGGTCGCAGTTGAAACTGATAAAGCTAAGGATGAAGAATCTGTGAATAGACTCATAGTAAAGTTCTGCTGCTCCTGCACAGTACCCCTGAACATGGGCAAGTGTGTGCACGTATGGGACGTGTACAGGAAGAGCCTGCTTCAGGAAGATCCCCACCAGAAAATAGTTCGCCACAGAGCGTCTGTGAATGGCAGTGCAATCATCTGGTCTGCAACAGAGCTTAAAGAAGCCGGAATCAGATTCAAGAAAAGCAAATCTGCAAGCCTCAAAGACATCTCATTCTCTGGGGGAATCCTGAAGCTCCCACTTATGGTTGTGGATGATTCAACCGAGTCCATGTTCTTGAATATGATAGCATTTGAGAGATTCCATGTTGGAGCAGGAAATGAGGTGACGTCTTACATATTCTTCATGGACAGCATCATAGACAATCACAGAGATGTTGGCCTCCTGCAATCAAAAGGCATCATCCACAACTTTCTGGGAAGTGATGATGCCGTGGCTAAACTTTTGAACTCACTCTCCAAGGATATAACTCTTGACCCAGACTGCAGCCTTGATAAAGTTCATAAAAGTGTCTATCACTACTGCAAGAAGCCTTGGAATAACGAGTGGCGCGCTAATCTTATCCAGACTTATTTCAGAAATCCATGGGCTATTATATCTCTTTTTGCAGCAATCTTGCTCTTTGTGCTTACTATAGCTCAGACTGTTACCCAGGTGATGGATGAAATAGCTCCCTCCTCTCCAGAACCGGGGTCTCCTCCTCCACCTATGGTGTCTTCAAATCGTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

419

Amino Acids

47.44

Weight (kDa)

6.17

Isoelectric Point (pI)

38.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 51 - 386 3e-91 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 860
AccB7I CCANNNNNTGG 1 cut(s) 1186
AccII CGCG 2 cut(s) 414, 1080
AclWI GGATC 2 cut(s) 356, 605
AcuI CTGAAG 4 cut(s) 225, 355, 587, 779
AcyI GRCGYC 1 cut(s) 857
AfaI GTAC 2 cut(s) 546, 587
AfiI CCNNNNNNNGG 5 cut(s) 556, 604, 772, 1186, 1217
AflIII ACRYGT 2 cut(s) 417, 582
AjiI CACGTC 1 cut(s) 583
AjnI CCWGG 1 cut(s) 1179
AloI GAACNNNNNNTCC 2 cut(s) 968, 1000
AluBI AGCT 7 cut(s) 269, 463, 488, 682, 763, 1166, 1199
AluI AGCT 7 cut(s) 269, 463, 488, 682, 763, 1166, 1199
Alw21I GWGCWC 1 cut(s) 573
Alw26I GTCTC 2 cut(s) 140, 1227
Alw44I GTGCAC 1 cut(s) 569
AlwI GGATC 2 cut(s) 356, 605
Ama87I CYCGRG 2 cut(s) 242, 428
AoxI GGCC 3 cut(s) 115, 143, 907
ApaLI GTGCAC 1 cut(s) 569
ApeKI GCWGC 3 cut(s) 531, 1014, 1136
AspLEI GCGC 2 cut(s) 1080, 1082
AspS9I GGNCC 1 cut(s) 144
AsuC2I CCSGG 1 cut(s) 1218
AsuHPI GGTGA 2 cut(s) 865, 1195
AvaI CYCGRG 2 cut(s) 242, 428
BaeGI GKGCMC 1 cut(s) 573
BarI GAAGNNNNNNTAC 2 cut(s) 215, 247
BbsI GAAGAC 1 cut(s) 1236
Bbv12I GWGCWC 1 cut(s) 573
BbvI GCAGC 3 cut(s) 518, 1026, 1148
BccI CCATC 3 cut(s) 43, 290, 1180
BceAI ACGGC 1 cut(s) 944
BciT130I CCWGG 1 cut(s) 1181
BcnI CCSGG 1 cut(s) 1218
BcoDI GTCTC 2 cut(s) 140, 1227
BfaI CTAG 1 cut(s) 270
BfmI CTRYAG 2 cut(s) 1012, 1161
BglII AGATCT 1 cut(s) 37
BisI GCNGC 3 cut(s) 532, 1015, 1137
BlsI GCNGC 3 cut(s) 533, 1016, 1138
Bme1390I CCNGG 2 cut(s) 1181, 1218
BmeT110I CYCGRG 2 cut(s) 242, 428
BmgBI CACGTC 1 cut(s) 583
BmgT120I GGNCC 1 cut(s) 144
BmrFI CCNGG 2 cut(s) 1181, 1218
BmsI GCATC 4 cut(s) 184, 891, 936, 946
BpiI GAAGAC 1 cut(s) 1236
BpmI CTGGAG 1 cut(s) 1194
Bpu10I CCTNAGC 1 cut(s) 489
BpuEI CTTGAG 1 cut(s) 340
BpuMI CCSGG 1 cut(s) 1218
BsaAI YACGTR 1 cut(s) 574
BsaHI GRCGYC 1 cut(s) 857
BsaI GGTCTC 1 cut(s) 1227
BsaJI CCNNGG 6 cut(s) 960, 987, 1061, 1112, 1179, 1217
BsaXI ACNNNNNCTCC 2 cut(s) 968, 998
Bsc4I CCNNNNNNNGG 5 cut(s) 556, 604, 772, 1186, 1217
Bse118I RCCGGY 1 cut(s) 90
Bse1I ACTGG 2 cut(s) 20, 248
Bse3DI GCAATG 1 cut(s) 94
BseBI CCWGG 1 cut(s) 1181
BseDI CCNNGG 6 cut(s) 960, 987, 1061, 1112, 1179, 1217
BseGI GGATG 6 cut(s) 54, 301, 499, 787, 930, 1195
BseLI CCNNNNNNNGG 5 cut(s) 556, 604, 772, 1186, 1217
BseMI GCAATG 1 cut(s) 94
BseMII CTCAG 1 cut(s) 1181
BseNI ACTGG 2 cut(s) 20, 248
BsePI GCGCGC 1 cut(s) 1078
BseRI GAGGAG 3 cut(s) 1195, 1215, 1218
BseSI GKGCMC 1 cut(s) 573
BseXI GCAGC 3 cut(s) 518, 1026, 1148
BsgI GTGCAG 1 cut(s) 523
Bsh1236I CGCG 2 cut(s) 414, 1080
BshFI GGCC 3 cut(s) 117, 145, 909
BsiHKAI GWGCWC 1 cut(s) 573
BsiHKCI CYCGRG 2 cut(s) 242, 428
BsiSI CCGG 3 cut(s) 91, 693, 1217
BslFI GGGAC 1 cut(s) 593
BslI CCNNNNNNNGG 5 cut(s) 556, 604, 772, 1186, 1217
BsmAI GTCTC 2 cut(s) 140, 1227
BsmFI GGGAC 1 cut(s) 593
BsnI GGCC 3 cut(s) 117, 145, 909
Bso31I GGTCTC 1 cut(s) 1227
BsoBI CYCGRG 2 cut(s) 242, 428
Bsp1286I GDGCHC 1 cut(s) 573
Bsp1407I TGTACA 1 cut(s) 585
Bsp143I GATC 3 cut(s) 37, 361, 610
Bsp19I CCATGG 1 cut(s) 1112
BspANI GGCC 3 cut(s) 117, 145, 909
BspCNI CTCAG 1 cut(s) 1180
BspFNI CGCG 2 cut(s) 414, 1080
BspMAI CTGCAG 1 cut(s) 1016
BspPI GGATC 2 cut(s) 356, 605
BspQI GCTCTTC 1 cut(s) 587
BspTNI GGTCTC 1 cut(s) 1227
BsrDI GCAATG 1 cut(s) 94
BsrFI RCCGGY 1 cut(s) 90
BsrGI TGTACA 1 cut(s) 585
BsrI ACTGG 2 cut(s) 20, 248
BssAI RCCGGY 1 cut(s) 90
BssECI CCNNGG 6 cut(s) 960, 987, 1061, 1112, 1179, 1217
BssHII GCGCGC 1 cut(s) 1078
BssMI GATC 3 cut(s) 37, 361, 610
BssNI GRCGYC 1 cut(s) 857
BssT1I CCWWGG 3 cut(s) 987, 1061, 1112
Bst2UI CCWGG 1 cut(s) 1181
Bst4CI ACNGT 4 cut(s) 134, 186, 544, 1174
Bst6I CTCTTC 1 cut(s) 587
BstACI GRCGYC 1 cut(s) 857
BstAUI TGTACA 1 cut(s) 585
BstBAI YACGTR 1 cut(s) 574
BstC8I GCNNGC 5 cut(s) 92, 377, 599, 724, 1080
BstDEI CTNAG 2 cut(s) 489, 1167
BstDSI CCRYGG 2 cut(s) 960, 1112
BstENI CCTNNNNNAGG 1 cut(s) 602
BstF5I GGATG 6 cut(s) 54, 301, 499, 787, 930, 1195
BstFNI CGCG 2 cut(s) 414, 1080
BstHHI GCGC 2 cut(s) 1080, 1082
BstKTI GATC 3 cut(s) 40, 364, 613
BstMAI GTCTC 2 cut(s) 140, 1227
BstMBI GATC 3 cut(s) 37, 361, 610
BstMWI GCNNNNNNNGC 3 cut(s) 96, 537, 1153
BstNI CCWGG 1 cut(s) 1181
BstNSI RCATGY 1 cut(s) 421
BstSCI CCNGG 2 cut(s) 1179, 1216
BstSFI CTRYAG 2 cut(s) 1012, 1161
BstSLI GKGCMC 1 cut(s) 573
BstUI CGCG 2 cut(s) 414, 1080
BstV1I GCAGC 3 cut(s) 518, 1026, 1148
BstV2I GAAGAC 1 cut(s) 1236
BstX2I RGATCY 2 cut(s) 37, 610
BstYI RGATCY 2 cut(s) 37, 610
BsuRI GGCC 3 cut(s) 117, 145, 909
BtgI CCRYGG 2 cut(s) 960, 1112
BtrI CACGTC 1 cut(s) 583
BtsCI GGATG 6 cut(s) 54, 301, 499, 787, 930, 1195
BtsI GCAGTG 2 cut(s) 66, 661
BtsIMutI CAGTG 3 cut(s) 66, 255, 661
Cac8I GCNNGC 5 cut(s) 92, 377, 599, 724, 1080
CfoI GCGC 2 cut(s) 1080, 1082
Cfr10I RCCGGY 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 144
CseI GACGC 1 cut(s) 630
Csp6I GTAC 2 cut(s) 545, 586
CspCI CAANNNNNGTGG 2 cut(s) 148, 183
CviQI GTAC 2 cut(s) 545, 586
DdeI CTNAG 2 cut(s) 489, 1167
DpnI GATC 3 cut(s) 39, 363, 612
DpnII GATC 3 cut(s) 37, 361, 610
Eam1104I CTCTTC 1 cut(s) 587
EarI CTCTTC 1 cut(s) 587
Eco130I CCWWGG 3 cut(s) 987, 1061, 1112
Eco147I AGGCCT 1 cut(s) 117
Eco31I GGTCTC 1 cut(s) 1227
Eco57I CTGAAG 4 cut(s) 225, 355, 587, 779
Eco88I CYCGRG 2 cut(s) 242, 428
EcoNI CCTNNNNNAGG 1 cut(s) 602
EcoRII CCWGG 1 cut(s) 1179
EcoT14I CCWWGG 3 cut(s) 987, 1061, 1112
ErhI CCWWGG 3 cut(s) 987, 1061, 1112
FaqI GGGAC 1 cut(s) 593
Fnu4HI GCNGC 3 cut(s) 532, 1015, 1137
FokI GGATG 6 cut(s) 61, 308, 506, 794, 917, 1202
Fsp4HI GCNGC 3 cut(s) 532, 1015, 1137
FspBI CTAG 1 cut(s) 270
GlaI GCGC 2 cut(s) 1079, 1081
GluI GCNGC 3 cut(s) 532, 1015, 1137
GsuI CTGGAG 1 cut(s) 1194
HaeIII GGCC 3 cut(s) 117, 145, 909
HapII CCGG 3 cut(s) 91, 693, 1217
HgaI GACGC 1 cut(s) 630
HhaI GCGC 2 cut(s) 1080, 1082
Hin1I GRCGYC 1 cut(s) 857
Hin6I GCGC 2 cut(s) 1078, 1080
HinP1I GCGC 2 cut(s) 1078, 1080
HpaII CCGG 3 cut(s) 91, 693, 1217
HphI GGTGA 2 cut(s) 865, 1195
Hpy166II GTNNAC 2 cut(s) 571, 586
Hpy188I TCNGA 3 cut(s) 701, 1106, 1170
Hpy8I GTNNAC 2 cut(s) 571, 586
HpyAV CCTTC 6 cut(s) 47, 59, 107, 149, 217, 412
HpyCH4III ACNGT 4 cut(s) 134, 186, 544, 1174
HpyCH4IV ACGT 3 cut(s) 573, 582, 857
HpyF10VI GCNNNNNNNGC 3 cut(s) 96, 537, 1153
HpyF3I CTNAG 2 cut(s) 489, 1167
HpySE526I ACGT 3 cut(s) 573, 582, 857
Hsp92I GRCGYC 1 cut(s) 857
HspAI GCGC 2 cut(s) 1078, 1080
KroI GCCGGC 1 cut(s) 90
KroNI GCCGGC 1 cut(s) 92
Kzo9I GATC 3 cut(s) 37, 361, 610
LguI GCTCTTC 1 cut(s) 587
LmnI GCTCC 6 cut(s) 56, 358, 539, 768, 839, 1204
Lsp1109I GCAGC 3 cut(s) 518, 1026, 1148
LweI GCATC 4 cut(s) 184, 891, 936, 946
MaeI CTAG 1 cut(s) 270
MaeII ACGT 3 cut(s) 573, 582, 857
MaeIII GTNAC 2 cut(s) 853, 1174
MalI GATC 3 cut(s) 39, 363, 612
MboI GATC 3 cut(s) 37, 361, 610
MboII GAAGA 8 cut(s) 47, 227, 361, 509, 604, 620, 862, 1236
MflI RGATCY 2 cut(s) 37, 610
MhlI GDGCHC 1 cut(s) 573
MlyI GAGTC 3 cut(s) 221, 507, 803
MmeI TCCRAC 1 cut(s) 817
MroNI GCCGGC 1 cut(s) 90
MseI TTAA 4 cut(s) 30, 42, 422, 684
MslI CAYNNNNRTG 3 cut(s) 422, 900, 1035
MspI CCGG 3 cut(s) 91, 693, 1217
MspR9I CCNGG 2 cut(s) 1181, 1218
MvaI CCWGG 1 cut(s) 1181
MvnI CGCG 2 cut(s) 414, 1080
MwoI GCNNNNNNNGC 3 cut(s) 96, 537, 1153
NaeI GCCGGC 1 cut(s) 92
NciI CCSGG 1 cut(s) 1218
NcoI CCATGG 1 cut(s) 1112
NdeII GATC 3 cut(s) 37, 361, 610
NgoMIV GCCGGC 1 cut(s) 90
NmuCI GTSAC 1 cut(s) 853
NspI RCATGY 1 cut(s) 421
PaeR7I CTCGAG 2 cut(s) 242, 428
PauI GCGCGC 1 cut(s) 1078
PceI AGGCCT 1 cut(s) 117
PciI ACATGT 1 cut(s) 417
PciSI GCTCTTC 1 cut(s) 587
PcsI WCGNNNNNNNCGW 1 cut(s) 579
PdiI GCCGGC 1 cut(s) 92
PfeI GAWTC 7 cut(s) 433, 500, 696, 702, 753, 785, 828
PflMI CCANNNNNTGG 1 cut(s) 1186
PkrI GCNGC 3 cut(s) 533, 1016, 1138
PleI GAGTC 3 cut(s) 221, 507, 802
PpsI GAGTC 3 cut(s) 221, 507, 802
Ppu21I YACGTR 1 cut(s) 574
PscI ACATGT 1 cut(s) 417
Psp6I CCWGG 1 cut(s) 1179
PspGI CCWGG 1 cut(s) 1179
PspPI GGNCC 1 cut(s) 144
PstI CTGCAG 1 cut(s) 1016
PsuI RGATCY 2 cut(s) 37, 610
PteI GCGCGC 1 cut(s) 1078
RsaI GTAC 2 cut(s) 546, 587
RsaNI GTAC 2 cut(s) 545, 586
RseI CAYNNNNRTG 3 cut(s) 422, 900, 1035
SapI GCTCTTC 1 cut(s) 587
SaqAI TTAA 4 cut(s) 30, 42, 422, 684
SatI GCNGC 3 cut(s) 532, 1015, 1137
Sau3AI GATC 3 cut(s) 37, 361, 610
Sau96I GGNCC 1 cut(s) 144
SchI GAGTC 3 cut(s) 221, 507, 803
ScrFI CCNGG 2 cut(s) 1181, 1218
SduI GDGCHC 1 cut(s) 573
SfaNI GCATC 4 cut(s) 184, 891, 936, 946
SfcI CTRYAG 2 cut(s) 1012, 1161
Sfr274I CTCGAG 2 cut(s) 242, 428
SlaI CTCGAG 2 cut(s) 242, 428
SmiMI CAYNNNNRTG 3 cut(s) 422, 900, 1035
SmlI CTYRAG 3 cut(s) 242, 319, 428
SmoI CTYRAG 3 cut(s) 242, 319, 428
SseBI AGGCCT 1 cut(s) 117
SspMI CTAG 1 cut(s) 270
StuI AGGCCT 1 cut(s) 117
StyD4I CCNGG 2 cut(s) 1179, 1216
StyI CCWWGG 3 cut(s) 987, 1061, 1112
TaaI ACNGT 4 cut(s) 134, 186, 544, 1174
TaiI ACGT 3 cut(s) 576, 585, 860
TaqI TCGA 2 cut(s) 243, 429
TatI WGTACW 1 cut(s) 585
TfiI GAWTC 7 cut(s) 433, 500, 696, 702, 753, 785, 828
Tru1I TTAA 4 cut(s) 30, 42, 422, 684
Tru9I TTAA 4 cut(s) 30, 42, 422, 684
TscAI CASTG 3 cut(s) 66, 255, 661
TseFI GTSAC 1 cut(s) 853
TseI GCWGC 3 cut(s) 531, 1014, 1136
Tsp45I GTSAC 1 cut(s) 853
TspDTI ATGAA 9 cut(s) 26, 48, 295, 380, 394, 510, 862, 1019, 1206
TspRI CASTG 3 cut(s) 66, 255, 661
Van91I CCANNNNNTGG 1 cut(s) 1186
VneI GTGCAC 1 cut(s) 569
XagI CCTNNNNNAGG 1 cut(s) 602
XceI RCATGY 1 cut(s) 421
XhoI CTCGAG 2 cut(s) 242, 428
XspI CTAG 1 cut(s) 270
ZraI GACGTC 1 cut(s) 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.