Rorug04G0218500

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0002269
Physical Location & Seq
Reverse (-)
37744816 .. 37745544
729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0218500.1

Sequence Viewer

Length: 717 bp
ATGGCGACCACCCTGCAGCAAGATGTTGTTGACAAACTCCTTATGAGTCTTTGGGCTATCTGGAAGAACCGAAACAACATGTTCTGGCATGGTACTTCTCAATCACATAATGAAATGATGTTTGCTGCATTGTCCTGGCTTGAAGGATTCAGGAAAGCAAGATCATCAACCCAACCGAGTCAAGATTTAAAACGGAAGCACAAGTGGCAGCCGGACACCGAAGGCAAGTGGAAATTCAACGTCGATGGTAGTTTTATACCACATCAAACCAAAGTTTTATACCACATCAAACCAAAGGGACTTGGTGGAGTATTAAGAGATTCACGAGGCAATTTCAAGGCTGCATTTACACTACCAGTGCAACATGTGGAAAGTACGAAACATGTAGAGTTGCTAGCCATCAATGAGGGATTAAAATTGATGTGTTCCTTTCCAGAGCAACCGGTTATAGTCGAAACCGAATGCCTTGATGCTACTTTGGACCTCAAAAATCCCAAATGGGATCTGTTAGCTTATATAGCAATCATGGCTGACATTCGAGCTCTATTACAGTCCAAAGACTCCAAACCAGAAATACAGATTTGTTTTGCCCATAGGACTTACAATAGGGTGGCGCACAGGTTGGCTAGTGTTGCTTTTGATGACAATGATAGTCATGTTTGGAGGGATAATCCCCTGGCATGTATCATAGATGTACTAGCCTTGGACTGTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

238

Amino Acids

27.27

Weight (kDa)

8.24

Isoelectric Point (pI)

44.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 100 - 210 1.1e-12 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 510
AcsI RAATTY 1 cut(s) 233
AfaI GTAC 3 cut(s) 94, 376, 696
AflIII ACRYGT 3 cut(s) 78, 364, 382
AgeI ACCGGT 1 cut(s) 442
AgsI TTSAA 3 cut(s) 143, 238, 337
AjnI CCWGG 2 cut(s) 134, 675
AluBI AGCT 2 cut(s) 512, 542
AluI AGCT 2 cut(s) 512, 542
Alw21I GWGCWC 1 cut(s) 544
AlwI GGATC 1 cut(s) 510
ApeKI GCWGC 4 cut(s) 16, 125, 208, 341
ApoI RAATTY 1 cut(s) 233
AsiGI ACCGGT 1 cut(s) 442
AspLEI GCGC 1 cut(s) 616
AspS9I GGNCC 1 cut(s) 481
AsuNHI GCTAGC 1 cut(s) 394
AvaII GGWCC 1 cut(s) 481
BanII GRGCYC 1 cut(s) 544
BauI CACGAG 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 544
BbvI GCAGC 4 cut(s) 28, 112, 220, 328
BccI CCATC 2 cut(s) 239, 407
BcgI CGANNNNNNTGC 1 cut(s) 29
BciT130I CCWGG 2 cut(s) 136, 677
BfaI CTAG 4 cut(s) 395, 627, 698, 715
BfmI CTRYAG 1 cut(s) 14
BisI GCNGC 4 cut(s) 17, 126, 209, 342
BlsI GCNGC 4 cut(s) 18, 127, 210, 343
Bme1390I CCNGG 2 cut(s) 136, 677
Bme18I GGWCC 1 cut(s) 481
BmgT120I GGNCC 1 cut(s) 481
BmrFI CCNGG 2 cut(s) 136, 677
BmsI GCATC 1 cut(s) 460
BmtI GCTAGC 1 cut(s) 398
BsaJI CCNNGG 2 cut(s) 675, 702
BsaWI WCCGGW 1 cut(s) 442
Bse118I RCCGGY 1 cut(s) 442
Bse1I ACTGG 1 cut(s) 356
BseBI CCWGG 2 cut(s) 136, 677
BseDI CCNNGG 2 cut(s) 675, 702
BseNI ACTGG 1 cut(s) 356
BseXI GCAGC 4 cut(s) 28, 112, 220, 328
BshTI ACCGGT 1 cut(s) 442
BsiHKAI GWGCWC 1 cut(s) 544
BsiSI CCGG 2 cut(s) 212, 443
BslFI GGGAC 1 cut(s) 312
BsmFI GGGAC 1 cut(s) 312
BsmI GAATGC 1 cut(s) 467
Bsp1286I GDGCHC 1 cut(s) 544
Bsp143I GATC 2 cut(s) 161, 502
BspMAI CTGCAG 1 cut(s) 18
BspOI GCTAGC 1 cut(s) 398
BspPI GGATC 1 cut(s) 510
BsrFI RCCGGY 1 cut(s) 442
BsrI ACTGG 1 cut(s) 356
BssAI RCCGGY 1 cut(s) 442
BssECI CCNNGG 2 cut(s) 675, 702
BssMI GATC 2 cut(s) 161, 502
BssSI CACGAG 1 cut(s) 324
BssT1I CCWWGG 1 cut(s) 702
Bst2BI CACGAG 1 cut(s) 324
Bst2UI CCWGG 2 cut(s) 136, 677
Bst4CI ACNGT 2 cut(s) 552, 710
BstC8I GCNNGC 1 cut(s) 396
BstHHI GCGC 1 cut(s) 616
BstKTI GATC 2 cut(s) 164, 505
BstMBI GATC 2 cut(s) 161, 502
BstMWI GCNNNNNNNGC 4 cut(s) 205, 518, 527, 632
BstNI CCWGG 2 cut(s) 136, 677
BstNSI RCATGY 4 cut(s) 82, 368, 386, 684
BstSCI CCNGG 2 cut(s) 134, 675
BstSFI CTRYAG 1 cut(s) 14
BstV1I GCAGC 4 cut(s) 28, 112, 220, 328
BstX2I RGATCY 1 cut(s) 502
BstYI RGATCY 1 cut(s) 502
BtsIMutI CAGTG 1 cut(s) 363
Cac8I GCNNGC 1 cut(s) 396
CfoI GCGC 1 cut(s) 616
Cfr10I RCCGGY 1 cut(s) 442
Cfr13I GGNCC 1 cut(s) 481
Csp6I GTAC 3 cut(s) 93, 375, 695
CspAI ACCGGT 1 cut(s) 442
CviAII CATG 7 cut(s) 79, 89, 365, 383, 526, 656, 681
CviQI GTAC 3 cut(s) 93, 375, 695
DpnI GATC 2 cut(s) 163, 504
DpnII GATC 2 cut(s) 161, 502
DraI TTTAAA 1 cut(s) 189
Ecl136II GAGCTC 1 cut(s) 542
Eco130I CCWWGG 1 cut(s) 702
Eco24I GRGCYC 1 cut(s) 544
Eco47I GGWCC 1 cut(s) 481
Eco53kI GAGCTC 1 cut(s) 542
EcoICRI GAGCTC 1 cut(s) 542
EcoRII CCWGG 2 cut(s) 134, 675
EcoT14I CCWWGG 1 cut(s) 702
EcoT38I GRGCYC 1 cut(s) 544
ErhI CCWWGG 1 cut(s) 702
FaeI CATG 7 cut(s) 82, 92, 368, 386, 529, 659, 684
FaqI GGGAC 1 cut(s) 312
FatI CATG 7 cut(s) 78, 88, 364, 382, 525, 655, 680
Fnu4HI GCNGC 4 cut(s) 17, 126, 209, 342
FriOI GRGCYC 1 cut(s) 544
Fsp4HI GCNGC 4 cut(s) 17, 126, 209, 342
FspBI CTAG 4 cut(s) 395, 627, 698, 715
GlaI GCGC 1 cut(s) 615
GluI GCNGC 4 cut(s) 17, 126, 209, 342
HapII CCGG 2 cut(s) 212, 443
HhaI GCGC 1 cut(s) 616
Hin1II CATG 7 cut(s) 82, 92, 368, 386, 529, 659, 684
Hin6I GCGC 1 cut(s) 614
HinP1I GCGC 1 cut(s) 614
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 5 cut(s) 46, 147, 178, 320, 560
HpaII CCGG 2 cut(s) 212, 443
Hpy166II GTNNAC 1 cut(s) 31
Hpy188III TCNNGA 5 cut(s) 61, 151, 182, 324, 434
Hpy8I GTNNAC 1 cut(s) 31
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 2 cut(s) 137, 215
HpyCH4III ACNGT 2 cut(s) 552, 710
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 4 cut(s) 16, 128, 344, 361
HpyF10VI GCNNNNNNNGC 4 cut(s) 205, 518, 527, 632
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 7 cut(s) 82, 92, 368, 386, 529, 659, 684
HspAI GCGC 1 cut(s) 614
Kzo9I GATC 2 cut(s) 161, 502
Lsp1109I GCAGC 4 cut(s) 28, 112, 220, 328
LweI GCATC 1 cut(s) 460
MaeI CTAG 4 cut(s) 395, 627, 698, 715
MaeII ACGT 1 cut(s) 240
MalI GATC 2 cut(s) 163, 504
MboI GATC 2 cut(s) 161, 502
MboII GAAGA 1 cut(s) 76
MflI RGATCY 1 cut(s) 502
MhlI GDGCHC 1 cut(s) 544
MluCI AATT 3 cut(s) 233, 331, 416
MlyI GAGTC 3 cut(s) 55, 187, 554
MnlI CCTC 4 cut(s) 320, 400, 494, 657
MseI TTAA 3 cut(s) 188, 314, 413
MspI CCGG 2 cut(s) 212, 443
MspR9I CCNGG 2 cut(s) 136, 677
Mva1269I GAATGC 1 cut(s) 467
MvaI CCWGG 2 cut(s) 136, 677
MwoI GCNNNNNNNGC 4 cut(s) 205, 518, 527, 632
NdeII GATC 2 cut(s) 161, 502
NheI GCTAGC 1 cut(s) 394
NlaIII CATG 7 cut(s) 82, 92, 368, 386, 529, 659, 684
NspI RCATGY 4 cut(s) 82, 368, 386, 684
PciI ACATGT 3 cut(s) 78, 364, 382
PctI GAATGC 1 cut(s) 467
PfeI GAWTC 2 cut(s) 147, 320
PinAI ACCGGT 1 cut(s) 442
PkrI GCNGC 4 cut(s) 18, 127, 210, 343
PleI GAGTC 3 cut(s) 54, 186, 554
PpsI GAGTC 3 cut(s) 54, 186, 554
PscI ACATGT 3 cut(s) 78, 364, 382
Psp124BI GAGCTC 1 cut(s) 544
Psp6I CCWGG 2 cut(s) 134, 675
PspGI CCWGG 2 cut(s) 134, 675
PspPI GGNCC 1 cut(s) 481
PstI CTGCAG 1 cut(s) 18
PsuI RGATCY 1 cut(s) 502
RsaI GTAC 3 cut(s) 94, 376, 696
RsaNI GTAC 3 cut(s) 93, 375, 695
SacI GAGCTC 1 cut(s) 544
SaqAI TTAA 3 cut(s) 188, 314, 413
SatI GCNGC 4 cut(s) 17, 126, 209, 342
Sau3AI GATC 2 cut(s) 161, 502
Sau96I GGNCC 1 cut(s) 481
SchI GAGTC 3 cut(s) 55, 187, 554
ScrFI CCNGG 2 cut(s) 136, 677
SduI GDGCHC 1 cut(s) 544
SetI ASST 5 cut(s) 243, 486, 514, 544, 623
SfaNI GCATC 1 cut(s) 460
SfcI CTRYAG 1 cut(s) 14
SinI GGWCC 1 cut(s) 481
Sse9I AATT 3 cut(s) 233, 331, 416
SspMI CTAG 4 cut(s) 395, 627, 698, 715
SstI GAGCTC 1 cut(s) 544
StyD4I CCNGG 2 cut(s) 134, 675
StyI CCWWGG 1 cut(s) 702
TaaI ACNGT 2 cut(s) 552, 710
TaiI ACGT 1 cut(s) 243
TaqI TCGA 3 cut(s) 243, 453, 538
TasI AATT 3 cut(s) 233, 331, 416
TatI WGTACW 1 cut(s) 694
TfiI GAWTC 2 cut(s) 147, 320
Tru1I TTAA 3 cut(s) 188, 314, 413
Tru9I TTAA 3 cut(s) 188, 314, 413
TscAI CASTG 1 cut(s) 363
TseI GCWGC 4 cut(s) 16, 125, 208, 341
TspDTI ATGAA 1 cut(s) 126
TspGWI ACGGA 1 cut(s) 208
TspRI CASTG 1 cut(s) 363
VpaK11BI GGWCC 1 cut(s) 481
XapI RAATTY 1 cut(s) 233
XceI RCATGY 4 cut(s) 82, 368, 386, 684
XspI CTAG 4 cut(s) 395, 627, 698, 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.