Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009627.1

Orthogroup ID

OG0002269

Physical Location & Seq

Genomic Coordinates Forward (+)

19741 .. 21259

Gene Structure 1519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009627.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

atggctggcaccggatggattattcaagttaatgaagatctcaagaacatggaaggtctttcaacagagaagcatcactggaataaggagtcaatctacaaattaccagccagcctcacagacatgaacaagaaggcctacaagcctcaaacagtctccttcgggccttaccattatgatccttcaaatccaatggaggagcacaagcatcgcgcgctgcttcatttcctcaaaagatgtggaaagcacgttgagttgtttgtagatgcattggctgaagtagagaatgatttgaaggactcatatactctgcttcattctgtgccgaaagaagttacagacatattcctgcaacttatgattttagatggctgtttcatgctggaaatcctaaggactgctgctcatgtagtggacgattatgctcctaatgatcccatcttcagcaatcatggtaggctccatgtcgtgccatacatcaagcgtgacatgttaatgcttgagaatcagttgccaatgcttgttcttgaaaagctggtggcagttgagcatgataaagctaaggatgaagggtttgtgaccaagctcatactcaagttcctctgctcctgcaatgtttctccaaacatgggaaagtgtgtgcatgtattggacgtgtacaggaagagtctgcttcagcatgagcctgatcacaaatatattcaccacaatataaggttaatggagcgtgatgatgagatcatctggtctgcaacggcgctcaatgaagcaggaatcaggttcaagaaaagtgcaactacaagcctcaaagacatcacattcacccggggagtgctgaggctccctgttgttgttgtggatgacaccaccgagtccatgttcttgaatctgatggcatttgaaagattccatgtaggagcaggaaatgaggtgacttcttatttaatcttcatggacaacatcatagacaatgctagggatgtctccctcttacactcgaaggggatcatccataatagtctggggagtgacaaagcagtggctaatctgttcaattcactatctaaggatgtgacacaagacccggatagcagccttcaaattgtgcataagagggtgtatcactactgcagaaagccgtggaataggtggcgtgccaatcttattcacacttacttcagaaatccatgggctgttatctctttcgttgctggtgtcttcctctttgtgttcactatagctcagactggatatgccatatatccctattactttccaccaaatgattcttctccttccactgtcatttttgttccggcagctcctcctcctccaaaccattcatcatccgactccacctgcccatcaacactagtgatttctttcattcttgtttccatggtatgcatgcttaccaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

473

Amino Acids

53.89

Weight (kDa)

6.56

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002269)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22070 FvH4_4g22070
malus_domestica	MD16G1130500.v1.1
prunus_persica	Prupe.1G210700_v2.0.a1
pyrus_communis	pycom16g11490
rosa_chinensis	RchiOBHm_Chr4g0427551 RchiOBHm_Chr4g0427561 RchiOBHm_Chr4g0428321 RchiOBHm_Chr4g0428331
rosa_laevigata	RLG00000007164 RLG00000007165 RLG00000007226 RLG00000007227
rosa_multiflora	Rmu_co8176162.1_g000001 Rmu_co8339473.1_g000001 Rmu_sc0007019.1_g000006 Rmu_sc0009627.1_g000005
rosa_roxburghii	Rroxscaffold_5G00369200 Rroxscaffold_5G00369220 Rroxscaffold_5G00369970
rosa_rugosa	Rorug04G0218500 Rorug04G0218600 Rorug04G0224700
rosa_samantha	Rh4AG275100 Rh4AG281300 Rh4AG281400 Rh4AG281500 Rh4BG280900 Rh4BG281000 Rh4BG286900 Rh4BG287000 Rh4BG287100 Rh4CG296200 Rh4CG302500 Rh4CG302600 Rh4CG302700 Rh4DG278300 Rh4DG284000 Rh4DG284100 Rh4DG284200
rosa_wichuraiana	Rw4G023850 Rw4G024430 Rw4G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1367
Acc36I	ACCTGC	1 cut(s)	1367
AccB1I	GGYRCC	1 cut(s)	8
AccII	CGCG	2 cut(s)	213, 215
AclWI	GGATC	3 cut(s)	173, 428, 1013
AcuI	CTGAAG	4 cut(s)	297, 427, 659, 1162
AfaI	GTAC	1 cut(s)	659
AfiI	CCNNNNNNNGG	1 cut(s)	629
AflIII	ACRYGT	2 cut(s)	489, 654
AhlI	ACTAGT	1 cut(s)	1372
AjiI	CACGTC	1 cut(s)	655
AjuI	GAANNNNNNNTTGG	2 cut(s)	1273, 1305
AluBI	AGCT	5 cut(s)	535, 560, 586, 1241, 1322
AluI	AGCT	5 cut(s)	535, 560, 586, 1241, 1322
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	2 cut(s)	160, 988
AlwI	GGATC	3 cut(s)	173, 428, 1013
Ama87I	CYCGRG	1 cut(s)	825
AoxI	GGCC	2 cut(s)	135, 164
ApeKI	GCWGC	4 cut(s)	217, 401, 1092, 1319
AspLEI	GCGC	3 cut(s)	215, 217, 760
AspS9I	GGNCC	1 cut(s)	164
AsuC2I	CCSGG	3 cut(s)	826, 827, 1085
AsuHPI	GGTGA	3 cut(s)	695, 814, 943
AvaI	CYCGRG	1 cut(s)	825
AxyI	CCTNAGG	1 cut(s)	392
BanI	GGYRCC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	1210
Bbv12I	GWGCWC	1 cut(s)	204
BbvCI	CCTCAGC	1 cut(s)	836
BbvI	GCAGC	4 cut(s)	204, 388, 1104, 1331
BccI	CCATC	5 cut(s)	9, 362, 446, 886, 1372
BceAI	ACGGC	2 cut(s)	771, 1123
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BclI	TGATCA	1 cut(s)	688
BcnI	CCSGG	3 cut(s)	826, 827, 1085
BcoDI	GTCTC	2 cut(s)	160, 988
BcuI	ACTAGT	1 cut(s)	1372
BfaI	CTAG	2 cut(s)	975, 1373
BfmI	CTRYAG	2 cut(s)	1129, 1236
BfoI	RGCGCY	1 cut(s)	761
BfuAI	ACCTGC	1 cut(s)	1367
BglII	AGATCT	1 cut(s)	37
BisI	GCNGC	4 cut(s)	218, 402, 1093, 1320
BlsI	GCNGC	4 cut(s)	219, 403, 1094, 1321
Bme1390I	CCNGG	3 cut(s)	826, 827, 1085
BmeT110I	CYCGRG	1 cut(s)	825
BmgBI	CACGTC	1 cut(s)	655
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	3 cut(s)	10, 461, 842
BmrFI	CCNGG	3 cut(s)	826, 827, 1085
BmsI	GCATC	3 cut(s)	82, 217, 256
BpiI	GAAGAC	1 cut(s)	1210
Bpu10I	CCTNAGC	2 cut(s)	561, 836
BpuEI	CTTGAG	3 cut(s)	26, 521, 578
BpuMI	CCSGG	3 cut(s)	826, 827, 1085
BsaJI	CCNNGG	5 cut(s)	825, 826, 1139, 1187, 1398
BsaWI	WCCGGW	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	1 cut(s)	629
Bse1I	ACTGG	2 cut(s)	83, 1252
Bse21I	CCTNAGG	1 cut(s)	392
Bse3DI	GCAATG	1 cut(s)	619
BseDI	CCNNGG	5 cut(s)	825, 826, 1139, 1187, 1398
BseGI	GGATG	7 cut(s)	20, 571, 865, 985, 1008, 1075, 1346
BseLI	CCNNNNNNNGG	1 cut(s)	629
BseMI	GCAATG	1 cut(s)	619
BseMII	CTCAG	2 cut(s)	827, 1256
BseNI	ACTGG	2 cut(s)	83, 1252
BsePI	GCGCGC	1 cut(s)	213
BseRI	GAGGAG	4 cut(s)	212, 1314, 1317, 1320
BseXI	GCAGC	4 cut(s)	204, 388, 1104, 1331
Bsh1236I	CGCG	2 cut(s)	213, 215
BshFI	GGCC	2 cut(s)	137, 166
BshNI	GGYRCC	1 cut(s)	8
BsiHKAI	GWGCWC	1 cut(s)	204
BsiHKCI	CYCGRG	1 cut(s)	825
BsiSI	CCGG	4 cut(s)	12, 826, 1085, 1316
BslI	CCNNNNNNNGG	1 cut(s)	629
BsmAI	GTCTC	2 cut(s)	160, 988
BsnI	GGCC	2 cut(s)	137, 166
BsoBI	CYCGRG	1 cut(s)	825
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp1407I	TGTACA	1 cut(s)	657
Bsp143I	GATC	6 cut(s)	37, 178, 433, 688, 738, 1005
Bsp19I	CCATGG	2 cut(s)	1187, 1398
BspANI	GGCC	2 cut(s)	137, 166
BspCNI	CTCAG	2 cut(s)	828, 1255
BspFNI	CGCG	2 cut(s)	213, 215
BspLI	GGNNCC	3 cut(s)	10, 461, 842
BspMAI	CTGCAG	1 cut(s)	1133
BspMI	ACCTGC	1 cut(s)	1367
BspPI	GGATC	3 cut(s)	173, 428, 1013
BspT107I	GGYRCC	1 cut(s)	8
BsrDI	GCAATG	1 cut(s)	619
BsrGI	TGTACA	1 cut(s)	657
BsrI	ACTGG	2 cut(s)	83, 1252
BssECI	CCNNGG	5 cut(s)	825, 826, 1139, 1187, 1398
BssHII	GCGCGC	1 cut(s)	213
BssMI	GATC	6 cut(s)	37, 178, 433, 688, 738, 1005
BssT1I	CCWWGG	2 cut(s)	1187, 1398
Bst4CI	ACNGT	2 cut(s)	154, 1303
Bst6I	CTCTTC	1 cut(s)	659
BstAUI	TGTACA	1 cut(s)	657
BstC8I	GCNNGC	5 cut(s)	7, 112, 215, 1155, 1409
BstDEI	CTNAG	5 cut(s)	392, 561, 836, 1065, 1242
BstDSI	CCRYGG	3 cut(s)	1139, 1187, 1398
BstF5I	GGATG	7 cut(s)	20, 571, 865, 985, 1008, 1075, 1346
BstFNI	CGCG	2 cut(s)	213, 215
BstH2I	RGCGCY	1 cut(s)	761
BstHHI	GCGC	3 cut(s)	215, 217, 760
BstKTI	GATC	6 cut(s)	40, 181, 436, 691, 741, 1008
BstMAI	GTCTC	2 cut(s)	160, 988
BstMBI	GATC	6 cut(s)	37, 178, 433, 688, 738, 1005
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstNSI	RCATGY	3 cut(s)	493, 647, 1411
BstSCI	CCNGG	3 cut(s)	824, 825, 1083
BstSFI	CTRYAG	2 cut(s)	1129, 1236
BstUI	CGCG	2 cut(s)	213, 215
BstV1I	GCAGC	4 cut(s)	204, 388, 1104, 1331
BstV2I	GAAGAC	1 cut(s)	1210
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
Bsu36I	CCTNAGG	1 cut(s)	392
BsuRI	GGCC	2 cut(s)	137, 166
BtgI	CCRYGG	3 cut(s)	1139, 1187, 1398
BtgZI	GCGATG	1 cut(s)	194
BtrI	CACGTC	1 cut(s)	655
BtsCI	GGATG	7 cut(s)	20, 571, 865, 985, 1008, 1075, 1346
BtsI	GCAGTG	1 cut(s)	1044
BtsIMutI	CAGTG	3 cut(s)	76, 1044, 1299
BveI	ACCTGC	1 cut(s)	1367
Cac8I	GCNNGC	5 cut(s)	7, 112, 215, 1155, 1409
CfoI	GCGC	3 cut(s)	215, 217, 760
Cfr13I	GGNCC	1 cut(s)	164
Cfr9I	CCCGGG	1 cut(s)	825
Csp6I	GTAC	1 cut(s)	658
CspCI	CAANNNNNGTGG	2 cut(s)	220, 255
CviQI	GTAC	1 cut(s)	658
DdeI	CTNAG	5 cut(s)	392, 561, 836, 1065, 1242
DpnI	GATC	6 cut(s)	39, 180, 435, 690, 740, 1007
DpnII	GATC	6 cut(s)	37, 178, 433, 688, 738, 1005
Eam1104I	CTCTTC	1 cut(s)	659
EarI	CTCTTC	1 cut(s)	659
Eco130I	CCWWGG	2 cut(s)	1187, 1398
Eco147I	AGGCCT	1 cut(s)	137
Eco57I	CTGAAG	4 cut(s)	297, 427, 659, 1162
Eco81I	CCTNAGG	1 cut(s)	392
Eco88I	CYCGRG	1 cut(s)	825
EcoT14I	CCWWGG	2 cut(s)	1187, 1398
EcoT22I	ATGCAT	2 cut(s)	271, 1409
ErhI	CCWWGG	2 cut(s)	1187, 1398
FbaI	TGATCA	1 cut(s)	688
Fnu4HI	GCNGC	4 cut(s)	218, 402, 1093, 1320
FokI	GGATG	7 cut(s)	27, 578, 872, 992, 995, 1082, 1333
Fsp4HI	GCNGC	4 cut(s)	218, 402, 1093, 1320
FspBI	CTAG	2 cut(s)	975, 1373
GlaI	GCGC	3 cut(s)	214, 216, 759
GluI	GCNGC	4 cut(s)	218, 402, 1093, 1320
HaeII	RGCGCY	1 cut(s)	761
HaeIII	GGCC	2 cut(s)	137, 166
HapII	CCGG	4 cut(s)	12, 826, 1085, 1316
HhaI	GCGC	3 cut(s)	215, 217, 760
Hin6I	GCGC	3 cut(s)	213, 215, 758
HinP1I	GCGC	3 cut(s)	213, 215, 758
HpaII	CCGG	4 cut(s)	12, 826, 1085, 1316
HphI	GGTGA	3 cut(s)	695, 814, 943
Hpy166II	GTNNAC	3 cut(s)	415, 658, 1233
Hpy188I	TCNGA	4 cut(s)	891, 1181, 1245, 1351
Hpy188III	TCNNGA	4 cut(s)	43, 527, 784, 883
Hpy8I	GTNNAC	3 cut(s)	415, 658, 1233
HpyAV	CCTTC	9 cut(s)	47, 127, 169, 192, 289, 563, 994, 1106, 1305
HpyCH4III	ACNGT	2 cut(s)	154, 1303
HpyCH4IV	ACGT	2 cut(s)	249, 654
HpyCH4V	TGCA	9 cut(s)	269, 352, 612, 643, 752, 794, 1108, 1131, 1407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
HpyF3I	CTNAG	5 cut(s)	392, 561, 836, 1065, 1242
HpySE526I	ACGT	2 cut(s)	249, 654
HspAI	GCGC	3 cut(s)	213, 215, 758
Ksp22I	TGATCA	1 cut(s)	688
Kzo9I	GATC	6 cut(s)	37, 178, 433, 688, 738, 1005
LmnI	GCTCC	8 cut(s)	199, 430, 465, 611, 724, 846, 917, 1327
Lsp1109I	GCAGC	4 cut(s)	204, 388, 1104, 1331
LweI	GCATC	3 cut(s)	82, 217, 256
MaeI	CTAG	2 cut(s)	975, 1373
MaeII	ACGT	2 cut(s)	249, 654
MaeIII	GTNAC	6 cut(s)	334, 485, 577, 931, 1028, 1072
MalI	GATC	6 cut(s)	39, 180, 435, 690, 740, 1007
MboI	GATC	6 cut(s)	37, 178, 433, 688, 738, 1005
MboII	GAAGA	6 cut(s)	47, 433, 676, 940, 1210, 1281
MfeI	CAATTG	1 cut(s)	1417
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	4 cut(s)	101, 1054, 1101, 1417
MlyI	GAGTC	5 cut(s)	98, 293, 676, 881, 1346
MmeI	TCCRAC	1 cut(s)	1374
Mph1103I	ATGCAT	2 cut(s)	271, 1409
MseI	TTAA	4 cut(s)	30, 494, 719, 944
MslI	CAYNNNNRTG	2 cut(s)	122, 494
MspI	CCGG	4 cut(s)	12, 826, 1085, 1316
MspR9I	CCNGG	3 cut(s)	826, 827, 1085
MunI	CAATTG	1 cut(s)	1417
MvnI	CGCG	2 cut(s)	213, 215
MwoI	GCNNNNNNNGC	1 cut(s)	214
NciI	CCSGG	3 cut(s)	826, 827, 1085
NcoI	CCATGG	2 cut(s)	1187, 1398
NdeII	GATC	6 cut(s)	37, 178, 433, 688, 738, 1005
NlaIV	GGNNCC	3 cut(s)	10, 461, 842
NmuCI	GTSAC	5 cut(s)	485, 577, 931, 1028, 1072
NsiI	ATGCAT	2 cut(s)	271, 1409
NspI	RCATGY	3 cut(s)	493, 647, 1411
PaeI	GCATGC	1 cut(s)	1411
PaqCI	CACCTGC	1 cut(s)	1367
PauI	GCGCGC	1 cut(s)	213
PceI	AGGCCT	1 cut(s)	137
PciI	ACATGT	1 cut(s)	489
PfeI	GAWTC	5 cut(s)	505, 774, 886, 906, 1286
PkrI	GCNGC	4 cut(s)	219, 403, 1094, 1321
PleI	GAGTC	5 cut(s)	97, 293, 675, 880, 1346
PpsI	GAGTC	5 cut(s)	97, 293, 675, 880, 1346
PscI	ACATGT	1 cut(s)	489
PspN4I	GGNNCC	3 cut(s)	10, 461, 842
PspPI	GGNCC	1 cut(s)	164
PstI	CTGCAG	1 cut(s)	1133
PsuI	RGATCY	1 cut(s)	37
PteI	GCGCGC	1 cut(s)	213
RsaI	GTAC	1 cut(s)	659
RsaNI	GTAC	1 cut(s)	658
RseI	CAYNNNNRTG	2 cut(s)	122, 494
SaqAI	TTAA	4 cut(s)	30, 494, 719, 944
SatI	GCNGC	4 cut(s)	218, 402, 1093, 1320
Sau3AI	GATC	6 cut(s)	37, 178, 433, 688, 738, 1005
Sau96I	GGNCC	1 cut(s)	164
SchI	GAGTC	5 cut(s)	98, 293, 676, 881, 1346
ScrFI	CCNGG	3 cut(s)	826, 827, 1085
SduI	GDGCHC	1 cut(s)	204
SfaNI	GCATC	3 cut(s)	82, 217, 256
SfcI	CTRYAG	2 cut(s)	1129, 1236
SmaI	CCCGGG	1 cut(s)	827
SmiMI	CAYNNNNRTG	2 cut(s)	122, 494
SmlI	CTYRAG	3 cut(s)	41, 500, 593
SmoI	CTYRAG	3 cut(s)	41, 500, 593
SpeI	ACTAGT	1 cut(s)	1372
SphI	GCATGC	1 cut(s)	1411
Sse9I	AATT	4 cut(s)	101, 1054, 1101, 1417
SseBI	AGGCCT	1 cut(s)	137
SspMI	CTAG	2 cut(s)	975, 1373
StuI	AGGCCT	1 cut(s)	137
StyD4I	CCNGG	3 cut(s)	824, 825, 1083
StyI	CCWWGG	2 cut(s)	1187, 1398
TaaI	ACNGT	2 cut(s)	154, 1303
TaiI	ACGT	2 cut(s)	252, 657
TaqI	TCGA	1 cut(s)	998
TasI	AATT	4 cut(s)	101, 1054, 1101, 1417
TatI	WGTACW	1 cut(s)	657
TfiI	GAWTC	5 cut(s)	505, 774, 886, 906, 1286
Tru1I	TTAA	4 cut(s)	30, 494, 719, 944
Tru9I	TTAA	4 cut(s)	30, 494, 719, 944
TscAI	CASTG	3 cut(s)	83, 1044, 1306
TseFI	GTSAC	5 cut(s)	485, 577, 931, 1028, 1072
TseI	GCWGC	4 cut(s)	217, 401, 1092, 1319
Tsp45I	GTSAC	5 cut(s)	485, 577, 931, 1028, 1072
TspMI	CCCGGG	1 cut(s)	825
TspRI	CASTG	3 cut(s)	83, 1044, 1306
XceI	RCATGY	3 cut(s)	493, 647, 1411
XmaI	CCCGGG	1 cut(s)	825
XspI	CTAG	2 cut(s)	975, 1373
Zsp2I	ATGCAT	2 cut(s)	271, 1409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.