Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001940

Physical Location & Seq

Genomic Coordinates Reverse (-)

56594827 .. 56596567

Gene Structure 1741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33133

Sequence Viewer

CDS Protein Promoter (2k)

Length: 153 bp

ATGGTCCCAACTCCCTGTTTTGGTTGTAGAATGGCCACCGATGGGAATGCTGTTGTACCATCACCGAAAGCTCCAGCTGAACCAAACCCGGGAGCTCCTGAGGCTCCGCCTACGGCTCCAACATCTGTAGGGATAAGTGTGGAAGCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

50

Amino Acids

4.9

Weight (kDa)

4.41

Isoelectric Point (pI)

54.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001940)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0054121 RchiOBHm_Chr5g0075631 RchiOBHm_Chr7g0218761
rosa_laevigata	RLG00000019954
rosa_multiflora	Rmu_co8337375.1_g000001 Rmu_sc0002724.1_g000041 Rmu_sc0003010.1_g000001 Rmu_ssc0000055.1_g000007
rosa_roxburghii	Rroxscaffold_2G00134930 Rroxscaffold_3G00245470
rosa_rugosa	Rorug02G0540100 Rorug04G0078000 Rorug07G0291900
rosa_samantha	Rh1AG017000 Rh1BG425200 Rh1CG073600 Rh1CG400600 Rh1DG047900 Rh1DG080500 Rh1DG458000 Rh2AG189900 Rh2DG158300 Rh2DG556600 Rh3AG195400 Rh3AG237500 Rh3BG189900 Rh3BG225600 Rh3BG288600 Rh3CG179800 Rh3CG220400 Rh3CG270300 Rh3DG221000 Rh4AG241700 Rh5AG065800 Rh5AG087600 Rh5AG472000 Rh5AG542700 Rh5BG423000 Rh5CG282600 Rh5DG082100 Rh6AG078100 Rh6BG094300 Rh6CG332600 Rh6DG209500 Rh7AG037100 Rh7DG465800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	107
AcoI	YGGCCR	1 cut(s)	33
AfaI	GTAC	1 cut(s)	57
AfiI	CCNNNNNNNGG	3 cut(s)	20, 42, 89
AluBI	AGCT	3 cut(s)	71, 77, 95
AluI	AGCT	3 cut(s)	71, 77, 95
Alw21I	GWGCWC	1 cut(s)	97
Ama87I	CYCGRG	1 cut(s)	88
AoxI	GGCC	1 cut(s)	33
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	2 cut(s)	89, 90
AsuHPI	GGTGA	1 cut(s)	54
AvaI	CYCGRG	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	4
AxyI	CCTNAGG	1 cut(s)	99
BalI	TGGCCA	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	97
BccI	CCATC	2 cut(s)	35, 67
BceAI	ACGGC	1 cut(s)	129
BcgI	CGANNNNNNTGC	2 cut(s)	29, 63
BcnI	CCSGG	2 cut(s)	89, 90
BfmI	CTRYAG	1 cut(s)	126
Bme1390I	CCNGG	2 cut(s)	89, 90
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	3 cut(s)	6, 105, 117
BmrFI	CCNGG	2 cut(s)	89, 90
BpmI	CTGGAG	1 cut(s)	57
BpuMI	CCSGG	2 cut(s)	89, 90
BsaJI	CCNNGG	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	3 cut(s)	20, 42, 89
Bse21I	CCTNAGG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	88
BseLI	CCNNNNNNNGG	3 cut(s)	20, 42, 89
BseMII	CTCAG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	97
BsiHKCI	CYCGRG	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	89
BslI	CCNNNNNNNGG	3 cut(s)	20, 42, 89
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	35
BsoBI	CYCGRG	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	97
BspACI	CCGC	1 cut(s)	107
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	91
BspLI	GGNNCC	3 cut(s)	6, 105, 117
BssECI	CCNNGG	1 cut(s)	88
BstDEI	CTNAG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstSCI	CCNGG	2 cut(s)	87, 88
BstSFI	CTRYAG	1 cut(s)	126
Bsu36I	CCTNAGG	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	4
Cfr9I	CCCGGG	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	56
CviJI	RGCY	7 cut(s)	35, 71, 77, 95, 104, 116, 146
CviKI_1	RGCY	7 cut(s)	35, 71, 77, 95, 104, 116, 146
CviQI	GTAC	1 cut(s)	56
DdeI	CTNAG	1 cut(s)	99
EaeI	YGGCCR	1 cut(s)	33
EciI	GGCGGA	1 cut(s)	96
Ecl136II	GAGCTC	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	95
Eco81I	CCTNAGG	1 cut(s)	99
Eco88I	CYCGRG	1 cut(s)	88
EcoICRI	GAGCTC	1 cut(s)	95
EcoT38I	GRGCYC	1 cut(s)	97
FriOI	GRGCYC	1 cut(s)	97
GsuI	CTGGAG	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	1 cut(s)	89
HpaII	CCGG	1 cut(s)	89
HphI	GGTGA	1 cut(s)	54
Hpy188III	TCNNGA	1 cut(s)	98
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	1 cut(s)	99
LmnI	GCTCC	5 cut(s)	76, 92, 100, 109, 121
LpnPI	CCDG	4 cut(s)	28, 87, 102, 111
MhlI	GDGCHC	1 cut(s)	97
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	1 cut(s)	148
MluNI	TGGCCA	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	1 cut(s)	94
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	1 cut(s)	151
Msp20I	TGGCCA	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	1 cut(s)	89
MspR9I	CCNGG	2 cut(s)	89, 90
Mva1269I	GAATGC	1 cut(s)	52
MwoI	GCNNNNNNNGC	1 cut(s)	101
NciI	CCSGG	2 cut(s)	89, 90
NlaIV	GGNNCC	3 cut(s)	6, 105, 117
PctI	GAATGC	1 cut(s)	52
Psp124BI	GAGCTC	1 cut(s)	97
PspN4I	GGNNCC	3 cut(s)	6, 105, 117
PspPI	GGNCC	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
SacI	GAGCTC	1 cut(s)	97
SaqAI	TTAA	1 cut(s)	151
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	89, 90
SduI	GDGCHC	1 cut(s)	97
SetI	ASST	3 cut(s)	73, 79, 97
SfcI	CTRYAG	1 cut(s)	126
SgeI	CNNG	6 cut(s)	27, 86, 100, 101, 102, 110
SinI	GGWCC	1 cut(s)	4
SmaI	CCCGGG	1 cut(s)	90
Sse9I	AATT	1 cut(s)	148
SsiI	CCGC	1 cut(s)	107
SstI	GAGCTC	1 cut(s)	97
StyD4I	CCNGG	2 cut(s)	87, 88
TasI	AATT	1 cut(s)	148
Tru1I	TTAA	1 cut(s)	151
Tru9I	TTAA	1 cut(s)	151
TspMI	CCCGGG	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	4
XmaI	CCCGGG	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.