Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001940

Physical Location & Seq

Genomic Coordinates Reverse (-)

52085444 .. 52088133

Gene Structure 2690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG332600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGTTACTGATGGGAATGATATTGTACCATCGCCGACAGCTCCAGTGGAACCAAACCCTGCAACACCTAATGCTCCGGTTAAGCCTACAGCTTCGACATCTGGTCGTCCTCCAAGACCAACAAAAGCCAAGAGGAAGAGGGCTGAGAAGAAGGCAGTCAAGACACTGAGTGTCACAACCAGGTCCGACGTCTGGGCACACTTTGAGAAGTTTGATCGGCCAATAGTGGAAGTGGTAGATGGAAAGAAGCAGGAAGTTGGACGTCAAATTATGCTAAGGAGAAATCCGGTGAACAATCAGCAAAAAGGGCTGCTTGTAAGGCAAAAAAATCGAAGCTGGCTGAGAATTCAGGGAAAATCGTCATTGCCAATTGATGGCTGGCTTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

14.46

Weight (kDa)

10.84

Isoelectric Point (pI)

54.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001940)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0054121 RchiOBHm_Chr5g0075631 RchiOBHm_Chr7g0218761
rosa_laevigata	RLG00000019954
rosa_multiflora	Rmu_co8337375.1_g000001 Rmu_sc0002724.1_g000041 Rmu_sc0003010.1_g000001 Rmu_ssc0000055.1_g000007
rosa_roxburghii	Rroxscaffold_2G00134930 Rroxscaffold_3G00245470
rosa_rugosa	Rorug02G0540100 Rorug04G0078000 Rorug07G0291900
rosa_samantha	Rh1AG017000 Rh1BG425200 Rh1CG073600 Rh1CG400600 Rh1DG047900 Rh1DG080500 Rh1DG458000 Rh2AG189900 Rh2DG158300 Rh2DG556600 Rh3AG195400 Rh3AG237500 Rh3BG189900 Rh3BG225600 Rh3BG288600 Rh3CG179800 Rh3CG220400 Rh3CG270300 Rh3DG221000 Rh4AG241700 Rh5AG065800 Rh5AG087600 Rh5AG472000 Rh5AG542700 Rh5BG423000 Rh5CG282600 Rh5DG082100 Rh6AG078100 Rh6BG094300 Rh6CG332600 Rh6DG209500 Rh7AG037100 Rh7DG465800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	192, 265
AccB7I	CCANNNNNTGG	1 cut(s)	374
AcoI	YGGCCR	1 cut(s)	218
AcsI	RAATTY	1 cut(s)	345
AcyI	GRCGYC	2 cut(s)	189, 262
AdeI	CACNNNGTG	1 cut(s)	170
AfaI	GTAC	1 cut(s)	27
AfiI	CCNNNNNNNGG	2 cut(s)	192, 374
AhdI	GACNNNNNGTC	1 cut(s)	102
AjnI	CCWGG	1 cut(s)	179
AluBI	AGCT	3 cut(s)	41, 92, 336
AluI	AGCT	3 cut(s)	41, 92, 336
AoxI	GGCC	1 cut(s)	218
ApeKI	GCWGC	1 cut(s)	310
ApoI	RAATTY	1 cut(s)	345
AspS9I	GGNCC	1 cut(s)	183
AsuHPI	GGTGA	1 cut(s)	301
AvaII	GGWCC	1 cut(s)	183
BaeGI	GKGCMC	1 cut(s)	199
BbvI	GCAGC	1 cut(s)	297
BccI	CCATC	4 cut(s)	5, 37, 233, 368
BcgI	CGANNNNNNTGC	2 cut(s)	311, 345
BciT130I	CCWGG	1 cut(s)	181
BfmI	CTRYAG	1 cut(s)	87
BisI	GCNGC	1 cut(s)	311
BlsI	GCNGC	1 cut(s)	312
Bme1390I	CCNGG	1 cut(s)	181
Bme18I	GGWCC	1 cut(s)	183
BmeRI	GACNNNNNGTC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	181
BpmI	CTGGAG	1 cut(s)	27
Bpu10I	CCTNAGC	1 cut(s)	275
BsaHI	GRCGYC	2 cut(s)	189, 262
BsaWI	WCCGGW	2 cut(s)	76, 286
Bsc4I	CCNNNNNNNGG	2 cut(s)	192, 374
Bse1I	ACTGG	1 cut(s)	44
Bse3DI	GCAATG	1 cut(s)	362
BseBI	CCWGG	1 cut(s)	181
BseLI	CCNNNNNNNGG	2 cut(s)	192, 374
BseMI	GCAATG	1 cut(s)	362
BseMII	CTCAG	3 cut(s)	135, 158, 332
BseNI	ACTGG	1 cut(s)	44
BseSI	GKGCMC	1 cut(s)	199
BseXI	GCAGC	1 cut(s)	297
BshFI	GGCC	1 cut(s)	220
BsiSI	CCGG	2 cut(s)	77, 287
BslI	CCNNNNNNNGG	2 cut(s)	192, 374
BsnI	GGCC	1 cut(s)	220
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	1 cut(s)	214
BspANI	GGCC	1 cut(s)	220
BspCNI	CTCAG	3 cut(s)	136, 159, 333
BspLI	GGNNCC	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	362
BsrI	ACTGG	1 cut(s)	44
BssMI	GATC	1 cut(s)	214
BssNI	GRCGYC	2 cut(s)	189, 262
Bst2UI	CCWGG	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	131
BstACI	GRCGYC	2 cut(s)	189, 262
BstC8I	GCNNGC	2 cut(s)	338, 380
BstDEI	CTNAG	4 cut(s)	144, 167, 275, 341
BstKTI	GATC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	2 cut(s)	307, 319
BstNI	CCWGG	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	179
BstSFI	CTRYAG	1 cut(s)	87
BstSLI	GKGCMC	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	297
BsuRI	GGCC	1 cut(s)	220
BtgZI	GCGATG	1 cut(s)	15
BtsIMutI	CAGTG	2 cut(s)	51, 164
Cac8I	GCNNGC	2 cut(s)	338, 380
Cfr13I	GGNCC	1 cut(s)	183
CsiI	ACCWGGT	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	26
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	4 cut(s)	144, 167, 275, 341
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
DraIII	CACNNNGTG	1 cut(s)	170
DriI	GACNNNNNGTC	1 cut(s)	102
EaeI	YGGCCR	1 cut(s)	218
Eam1104I	CTCTTC	1 cut(s)	131
Eam1105I	GACNNNNNGTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	183
EcoRI	GAATTC	1 cut(s)	345
EcoRII	CCWGG	1 cut(s)	179
FaiI	YATR	1 cut(s)	272
FalI	AAGNNNNNCTT	2 cut(s)	297, 329
Fnu4HI	GCNGC	1 cut(s)	311
Fsp4HI	GCNGC	1 cut(s)	311
GluI	GCNGC	1 cut(s)	311
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	220
HapII	CCGG	2 cut(s)	77, 287
Hin1I	GRCGYC	2 cut(s)	189, 262
HpaII	CCGG	2 cut(s)	77, 287
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	1 cut(s)	160
Hpy8I	GTNNAC	1 cut(s)	292
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	1 cut(s)	145
HpyCH4IV	ACGT	2 cut(s)	189, 262
HpyCH4V	TGCA	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	2 cut(s)	307, 319
HpyF3I	CTNAG	4 cut(s)	144, 167, 275, 341
HpySE526I	ACGT	2 cut(s)	189, 262
Hsp92I	GRCGYC	2 cut(s)	189, 262
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	2 cut(s)	46, 79
Lsp1109I	GCAGC	1 cut(s)	297
MabI	ACCWGGT	1 cut(s)	179
MaeII	ACGT	2 cut(s)	189, 262
MaeIII	GTNAC	2 cut(s)	4, 172
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	2 cut(s)	148, 160
MfeI	CAATTG	1 cut(s)	369
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	3 cut(s)	267, 345, 369
MmeI	TCCRAC	2 cut(s)	210, 238
MnlI	CCTC	3 cut(s)	120, 126, 132
MseI	TTAA	1 cut(s)	81
MspI	CCGG	2 cut(s)	77, 287
MspR9I	CCNGG	1 cut(s)	181
MunI	CAATTG	1 cut(s)	369
MvaI	CCWGG	1 cut(s)	181
MwoI	GCNNNNNNNGC	2 cut(s)	307, 319
NdeII	GATC	1 cut(s)	214
NlaIV	GGNNCC	1 cut(s)	51
NmuCI	GTSAC	1 cut(s)	172
PflMI	CCANNNNNTGG	1 cut(s)	374
PkrI	GCNGC	1 cut(s)	312
Psp6I	CCWGG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	179
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	1 cut(s)	183
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	1 cut(s)	311
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	1 cut(s)	183
ScrFI	CCNGG	1 cut(s)	181
SduI	GDGCHC	1 cut(s)	199
SetI	ASST	7 cut(s)	43, 70, 94, 185, 192, 265, 338
SexAI	ACCWGGT	1 cut(s)	179
SfcI	CTRYAG	1 cut(s)	87
SinI	GGWCC	1 cut(s)	183
Sse9I	AATT	3 cut(s)	267, 345, 369
StyD4I	CCNGG	1 cut(s)	179
TaiI	ACGT	2 cut(s)	192, 265
TaqI	TCGA	2 cut(s)	95, 331
TasI	AATT	3 cut(s)	267, 345, 369
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	2 cut(s)	51, 171
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	1 cut(s)	310
Tsp45I	GTSAC	1 cut(s)	172
TspRI	CASTG	2 cut(s)	51, 171
Van91I	CCANNNNNTGG	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	183
XapI	RAATTY	1 cut(s)	345
XcmI	CCANNNNNNNNNTGG	1 cut(s)	375
ZraI	GACGTC	2 cut(s)	190, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.