Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001940

Physical Location & Seq

Genomic Coordinates Reverse (-)

54367371 .. 54370202

Gene Structure 2832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG425200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAATATTCTCATTCATGATTCATTTCAACTAAATATTATGCTGGTCCCAACTCCCTGTTTTGGTTGTAGAATGGCCACCGATGGGAATGCTGTTGTACCATCGCCGAAAGCTCCAGCTGAACCAAACCCGGGAGCTCCTGAGGCTCCGCCTACGGCTCCAACATCTGCTTGTCCTCCTAGACCATCAATAAGGAAGAGAAAGCGGGCTGAAAAGAAGGCAGTGAAGCCACTGAAGGTCACAGCCAGTATTAATTTAATGTTTTTGAATGAAATGGCAGACTATGCGAAGGAGAAGGCTGCTGAACAAACAGCAAAAAAGGCTGCTTGTAGGGCTAAGAAATCGAAGATGGCTGCTGGTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

12.91

Weight (kDa)

9.87

Isoelectric Point (pI)

63.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001940)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0054121 RchiOBHm_Chr5g0075631 RchiOBHm_Chr7g0218761
rosa_laevigata	RLG00000019954
rosa_multiflora	Rmu_co8337375.1_g000001 Rmu_sc0002724.1_g000041 Rmu_sc0003010.1_g000001 Rmu_ssc0000055.1_g000007
rosa_roxburghii	Rroxscaffold_2G00134930 Rroxscaffold_3G00245470
rosa_rugosa	Rorug02G0540100 Rorug04G0078000 Rorug07G0291900
rosa_samantha	Rh1AG017000 Rh1BG425200 Rh1CG073600 Rh1CG400600 Rh1DG047900 Rh1DG080500 Rh1DG458000 Rh2AG189900 Rh2DG158300 Rh2DG556600 Rh3AG195400 Rh3AG237500 Rh3BG189900 Rh3BG225600 Rh3BG288600 Rh3CG179800 Rh3CG220400 Rh3CG270300 Rh3DG221000 Rh4AG241700 Rh5AG065800 Rh5AG087600 Rh5AG472000 Rh5AG542700 Rh5BG423000 Rh5CG282600 Rh5DG082100 Rh6AG078100 Rh6BG094300 Rh6CG332600 Rh6DG209500 Rh7AG037100 Rh7DG465800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	149, 205
AcoI	YGGCCR	1 cut(s)	75
AcuI	CTGAAG	1 cut(s)	254
AfaI	GTAC	1 cut(s)	99
AfiI	CCNNNNNNNGG	3 cut(s)	62, 84, 131
AgsI	TTSAA	2 cut(s)	29, 268
AluBI	AGCT	3 cut(s)	113, 119, 137
AluI	AGCT	3 cut(s)	113, 119, 137
Alw21I	GWGCWC	1 cut(s)	139
Ama87I	CYCGRG	1 cut(s)	130
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	3 cut(s)	299, 323, 353
AseI	ATTAAT	1 cut(s)	252
AspS9I	GGNCC	1 cut(s)	46
AsuC2I	CCSGG	2 cut(s)	131, 132
AvaI	CYCGRG	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	46
AxyI	CCTNAGG	1 cut(s)	141
BalI	TGGCCA	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	139
Bbv12I	GWGCWC	1 cut(s)	139
BbvI	GCAGC	3 cut(s)	286, 310, 340
BccI	CCATC	4 cut(s)	77, 109, 193, 343
BceAI	ACGGC	1 cut(s)	171
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BcnI	CCSGG	2 cut(s)	131, 132
BfaI	CTAG	1 cut(s)	180
BisI	GCNGC	3 cut(s)	300, 324, 354
BlsI	GCNGC	3 cut(s)	301, 325, 355
Bme1390I	CCNGG	2 cut(s)	131, 132
Bme18I	GGWCC	1 cut(s)	46
BmeT110I	CYCGRG	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	3 cut(s)	48, 147, 159
BmrFI	CCNGG	2 cut(s)	131, 132
BpmI	CTGGAG	1 cut(s)	99
BpuMI	CCSGG	2 cut(s)	131, 132
BsaJI	CCNNGG	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 84, 131
Bse1I	ACTGG	1 cut(s)	246
Bse21I	CCTNAGG	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	130
BseLI	CCNNNNNNNGG	3 cut(s)	62, 84, 131
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	246
BseXI	GCAGC	3 cut(s)	286, 310, 340
BshFI	GGCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	139
BsiHKCI	CYCGRG	1 cut(s)	130
BsiSI	CCGG	1 cut(s)	131
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	3 cut(s)	62, 84, 131
BsmFI	GGGAC	1 cut(s)	32
BsmI	GAATGC	1 cut(s)	94
BsnI	GGCC	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	139
BspACI	CCGC	2 cut(s)	149, 205
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	133
BspHI	TCATGA	1 cut(s)	16
BspLI	GGNNCC	3 cut(s)	48, 147, 159
BsrI	ACTGG	1 cut(s)	246
BssECI	CCNNGG	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	191
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	2 cut(s)	141, 336
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 284, 320, 332
BstSCI	CCNGG	2 cut(s)	129, 130
BstV1I	GCAGC	3 cut(s)	286, 310, 340
Bsu36I	CCTNAGG	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	77
BtgZI	GCGATG	1 cut(s)	87
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	2 cut(s)	228, 230
Cac8I	GCNNGC	1 cut(s)	207
CciI	TCATGA	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	46
Cfr9I	CCCGGG	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	98
CviAII	CATG	1 cut(s)	17
CviQI	GTAC	1 cut(s)	98
DdeI	CTNAG	2 cut(s)	141, 336
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
EciI	GGCGGA	1 cut(s)	138
Ecl136II	GAGCTC	1 cut(s)	137
Eco24I	GRGCYC	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	137
Eco57I	CTGAAG	1 cut(s)	254
Eco81I	CCTNAGG	1 cut(s)	141
Eco88I	CYCGRG	1 cut(s)	130
EcoICRI	GAGCTC	1 cut(s)	137
EcoT38I	GRGCYC	1 cut(s)	139
FaeI	CATG	1 cut(s)	20
FaiI	YATR	3 cut(s)	18, 41, 285
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	1 cut(s)	16
FauI	CCCGC	1 cut(s)	198
Fnu4HI	GCNGC	3 cut(s)	300, 324, 354
FriOI	GRGCYC	1 cut(s)	139
Fsp4HI	GCNGC	3 cut(s)	300, 324, 354
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	3 cut(s)	300, 324, 354
GsuI	CTGGAG	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	1 cut(s)	131
Hin1II	CATG	1 cut(s)	20
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	1 cut(s)	131
Hpy188III	TCNNGA	2 cut(s)	17, 140
HpyAV	CCTTC	4 cut(s)	211, 229, 283, 289
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 284, 320, 332
HpyF3I	CTNAG	2 cut(s)	141, 336
Hsp92II	CATG	1 cut(s)	20
LmnI	GCTCC	5 cut(s)	118, 134, 142, 151, 163
LpnPI	CCDG	7 cut(s)	29, 70, 129, 144, 153, 259, 342
Lsp1109I	GCAGC	3 cut(s)	286, 310, 340
MaeI	CTAG	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	238
MboII	GAAGA	2 cut(s)	208, 358
MhlI	GDGCHC	1 cut(s)	139
MlsI	TGGCCA	1 cut(s)	77
MluCI	AATT	1 cut(s)	253
MluNI	TGGCCA	1 cut(s)	77
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	2 cut(s)	136, 186
Mox20I	TGGCCA	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	77
MseI	TTAA	2 cut(s)	252, 257
Msp20I	TGGCCA	1 cut(s)	77
MspA1I	CMGCKG	1 cut(s)	119
MspI	CCGG	1 cut(s)	131
MspR9I	CCNGG	2 cut(s)	131, 132
Mva1269I	GAATGC	1 cut(s)	94
MwoI	GCNNNNNNNGC	4 cut(s)	143, 284, 320, 332
NciI	CCSGG	2 cut(s)	131, 132
NlaIII	CATG	1 cut(s)	20
NlaIV	GGNNCC	3 cut(s)	48, 147, 159
NmuCI	GTSAC	1 cut(s)	238
PagI	TCATGA	1 cut(s)	16
PctI	GAATGC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	3 cut(s)	301, 325, 355
PshBI	ATTAAT	1 cut(s)	252
Psp124BI	GAGCTC	1 cut(s)	139
PspN4I	GGNNCC	3 cut(s)	48, 147, 159
PspPI	GGNCC	1 cut(s)	46
PvuII	CAGCTG	1 cut(s)	119
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
SacI	GAGCTC	1 cut(s)	139
SaqAI	TTAA	2 cut(s)	252, 257
SatI	GCNGC	3 cut(s)	300, 324, 354
Sau96I	GGNCC	1 cut(s)	46
ScrFI	CCNGG	2 cut(s)	131, 132
SduI	GDGCHC	1 cut(s)	139
SetI	ASST	4 cut(s)	115, 121, 139, 240
SinI	GGWCC	1 cut(s)	46
SmaI	CCCGGG	1 cut(s)	132
Sse9I	AATT	1 cut(s)	253
SsiI	CCGC	2 cut(s)	149, 205
SspI	AATATT	2 cut(s)	7, 37
SspMI	CTAG	1 cut(s)	180
SstI	GAGCTC	1 cut(s)	139
StyD4I	CCNGG	2 cut(s)	129, 130
TaqI	TCGA	1 cut(s)	344
TasI	AATT	1 cut(s)	253
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	2 cut(s)	252, 257
Tru9I	TTAA	2 cut(s)	252, 257
TscAI	CASTG	2 cut(s)	228, 237
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	3 cut(s)	299, 323, 353
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	4 cut(s)	5, 12, 17, 285
TspMI	CCCGGG	1 cut(s)	130
TspRI	CASTG	2 cut(s)	228, 237
VpaK11BI	GGWCC	1 cut(s)	46
VspI	ATTAAT	1 cut(s)	252
XmaI	CCCGGG	1 cut(s)	130
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.