Rh6DG209500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001940
Physical Location & Seq
Reverse (-)
37336849 .. 37340425
3577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG209500.1

Sequence Viewer

Length: 345 bp
ATGTTCATGGCTACTGATGGGAATGATATTGTACCATCGCCGACAGCTCCAGTGGAACCAAACCCTGCAACACCTGATGCTCCGGTTAAGCCTACAGCTTCGACATCTGGTCGTCCTCCAAGACCAACAAAAGCCAAGAGGAAGAGGGCTGAGAAGAAGGCAGTCAAGACACTGAGTGTCACAACCAGGTCCGACGTCTGGGCACACTTTGAGAAGTTTGATCGGCCAATAGTGGAAGTGATTATGAGAAGGAGAAATCCGGTGAACAAGCAGCAAAAAGGGTTGCTTGGTGAACTTTGGATATGGATATTGGATAGTGTTTTGAACTTCAACATGTTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.83

Weight (kDa)

10.38

Isoelectric Point (pI)

56.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 198
AcoI YGGCCR 1 cut(s) 224
AcyI GRCGYC 1 cut(s) 195
AdeI CACNNNGTG 1 cut(s) 176
AfaI GTAC 1 cut(s) 33
AfiI CCNNNNNNNGG 1 cut(s) 198
AflIII ACRYGT 1 cut(s) 333
AgsI TTSAA 3 cut(s) 325, 331, 340
AhdI GACNNNNNGTC 1 cut(s) 108
AjnI CCWGG 1 cut(s) 185
AluBI AGCT 2 cut(s) 47, 98
AluI AGCT 2 cut(s) 47, 98
AoxI GGCC 1 cut(s) 224
ApeKI GCWGC 1 cut(s) 271
AspS9I GGNCC 1 cut(s) 189
AsuHPI GGTGA 2 cut(s) 274, 302
AvaII GGWCC 1 cut(s) 189
BaeGI GKGCMC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 283
BccI CCATC 2 cut(s) 11, 43
BciT130I CCWGG 1 cut(s) 187
BfmI CTRYAG 1 cut(s) 93
BisI GCNGC 1 cut(s) 272
BlsI GCNGC 1 cut(s) 273
Bme1390I CCNGG 1 cut(s) 187
Bme18I GGWCC 1 cut(s) 189
BmeRI GACNNNNNGTC 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 189
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 1 cut(s) 187
BmsI GCATC 1 cut(s) 67
BpmI CTGGAG 1 cut(s) 33
BsaHI GRCGYC 1 cut(s) 195
BsaWI WCCGGW 2 cut(s) 82, 259
Bsc4I CCNNNNNNNGG 1 cut(s) 198
Bse1I ACTGG 1 cut(s) 50
BseBI CCWGG 1 cut(s) 187
BseLI CCNNNNNNNGG 1 cut(s) 198
BseMII CTCAG 2 cut(s) 141, 164
BseNI ACTGG 1 cut(s) 50
BseSI GKGCMC 1 cut(s) 205
BseXI GCAGC 1 cut(s) 283
BshFI GGCC 1 cut(s) 226
BsiSI CCGG 2 cut(s) 83, 260
BslI CCNNNNNNNGG 1 cut(s) 198
BsnI GGCC 1 cut(s) 226
Bsp1286I GDGCHC 1 cut(s) 205
Bsp143I GATC 1 cut(s) 220
BspANI GGCC 1 cut(s) 226
BspCNI CTCAG 2 cut(s) 142, 165
BspLI GGNNCC 1 cut(s) 57
BsrI ACTGG 1 cut(s) 50
BssMI GATC 1 cut(s) 220
BssNI GRCGYC 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 187
Bst6I CTCTTC 1 cut(s) 137
BstACI GRCGYC 1 cut(s) 195
BstDEI CTNAG 2 cut(s) 150, 173
BstKTI GATC 1 cut(s) 223
BstMBI GATC 1 cut(s) 220
BstNI CCWGG 1 cut(s) 187
BstNSI RCATGY 1 cut(s) 337
BstSCI CCNGG 1 cut(s) 185
BstSFI CTRYAG 1 cut(s) 93
BstSLI GKGCMC 1 cut(s) 205
BstV1I GCAGC 1 cut(s) 283
BsuRI GGCC 1 cut(s) 226
BtgZI GCGATG 1 cut(s) 21
BtsIMutI CAGTG 2 cut(s) 57, 170
Cfr13I GGNCC 1 cut(s) 189
CsiI ACCWGGT 1 cut(s) 185
Csp6I GTAC 1 cut(s) 32
CviAII CATG 2 cut(s) 7, 334
CviJI RGCY 7 cut(s) 11, 47, 91, 98, 134, 149, 226
CviKI_1 RGCY 7 cut(s) 11, 47, 91, 98, 134, 149, 226
CviQI GTAC 1 cut(s) 32
DdeI CTNAG 2 cut(s) 150, 173
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
DraIII CACNNNGTG 1 cut(s) 176
DriI GACNNNNNGTC 1 cut(s) 108
EaeI YGGCCR 1 cut(s) 224
Eam1104I CTCTTC 1 cut(s) 137
Eam1105I GACNNNNNGTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 137
Eco47I GGWCC 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 185
FaeI CATG 2 cut(s) 10, 337
FaiI YATR 4 cut(s) 8, 245, 304, 335
FalI AAGNNNNNCTT 2 cut(s) 270, 302
FatI CATG 2 cut(s) 6, 333
Fnu4HI GCNGC 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 272
GluI GCNGC 1 cut(s) 272
GsuI CTGGAG 1 cut(s) 33
HaeIII GGCC 1 cut(s) 226
HapII CCGG 2 cut(s) 83, 260
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 2 cut(s) 10, 337
HpaII CCGG 2 cut(s) 83, 260
HphI GGTGA 2 cut(s) 274, 302
Hpy166II GTNNAC 2 cut(s) 265, 293
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 1 cut(s) 166
Hpy8I GTNNAC 2 cut(s) 265, 293
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 2 cut(s) 151, 243
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 1 cut(s) 68
HpyF3I CTNAG 2 cut(s) 150, 173
HpySE526I ACGT 1 cut(s) 195
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 2 cut(s) 10, 337
Kzo9I GATC 1 cut(s) 220
LmnI GCTCC 2 cut(s) 52, 85
LpnPI CCDG 9 cut(s) 63, 78, 87, 93, 96, 172, 184, 199, 273
Lsp1109I GCAGC 1 cut(s) 283
LweI GCATC 1 cut(s) 67
MabI ACCWGGT 1 cut(s) 185
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 1 cut(s) 178
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 2 cut(s) 154, 166
MhlI GDGCHC 1 cut(s) 205
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 3 cut(s) 126, 132, 138
MseI TTAA 1 cut(s) 87
MspI CCGG 2 cut(s) 83, 260
MspR9I CCNGG 1 cut(s) 187
MvaI CCWGG 1 cut(s) 187
NdeII GATC 1 cut(s) 220
NlaIII CATG 2 cut(s) 10, 337
NlaIV GGNNCC 1 cut(s) 57
NmuCI GTSAC 1 cut(s) 178
NspI RCATGY 1 cut(s) 337
PciI ACATGT 1 cut(s) 333
PkrI GCNGC 1 cut(s) 273
PscI ACATGT 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 185
PspN4I GGNNCC 1 cut(s) 57
PspPI GGNCC 1 cut(s) 189
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 1 cut(s) 272
Sau3AI GATC 1 cut(s) 220
Sau96I GGNCC 1 cut(s) 189
ScrFI CCNGG 1 cut(s) 187
SduI GDGCHC 1 cut(s) 205
SetI ASST 5 cut(s) 49, 76, 100, 191, 198
SexAI ACCWGGT 1 cut(s) 185
SfaNI GCATC 1 cut(s) 67
SfcI CTRYAG 1 cut(s) 93
SinI GGWCC 1 cut(s) 189
StyD4I CCNGG 1 cut(s) 185
TaiI ACGT 1 cut(s) 198
TaqI TCGA 1 cut(s) 101
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TscAI CASTG 2 cut(s) 57, 177
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 1 cut(s) 271
Tsp45I GTSAC 1 cut(s) 178
TspRI CASTG 2 cut(s) 57, 177
VpaK11BI GGWCC 1 cut(s) 189
XceI RCATGY 1 cut(s) 337
ZraI GACGTC 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.