Rh5CG282600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001940
Physical Location & Seq
Forward (+)
30877466 .. 30883624
6159 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG282600.1

Sequence Viewer

Length: 474 bp
ATGGCTACTGATGGGAATGTTATTGTACCATCGCCAACAGCTCCAATGGAACCAAACCCTGCAGCGCCTGATGCTCCGGTTAAGCCTACAGCTTCGACATCTGGTCGTCCTCCAAGACCAACAAAAGCCAAGAGGAAGAGGGCTGAGAAGAAGGCAGTCAAGACACTGAATGTCACAACCAGGTCCGACGTCTGGGCACACTTTGAGAAGTTTGATCGGCCAATAGTGGAAGTGGTGGATGGAAAGAAGCAGGAAGTTGGACGTCAAATTAGAGTTGTCAACGGTGTCCTGCCTATTGGTGACTATTCCTTTGCTAAGAATAACAAGGTGCACGTGTACATCAAGTGGCGTGCGACTAAAAATTGGCCTGAAACTGATGATGCAGTTGAAAAGGTCCATGAAGGTGCATTTGGTTCTGTTGGTGATGATCAATCACTTCGTAATTACTTGGAATCTCTGGGACAACATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.37

Weight (kDa)

9.58

Isoelectric Point (pI)

35.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 192, 265
AcoI YGGCCR 1 cut(s) 218
AcvI CACGTG 1 cut(s) 334
AcyI GRCGYC 2 cut(s) 189, 262
AfaI GTAC 2 cut(s) 27, 338
AfiI CCNNNNNNNGG 1 cut(s) 192
AflIII ACRYGT 1 cut(s) 333
AgsI TTSAA 1 cut(s) 389
AhdI GACNNNNNGTC 1 cut(s) 102
AjnI CCWGG 1 cut(s) 179
AjuI GAANNNNNNNTTGG 2 cut(s) 393, 425
AluBI AGCT 2 cut(s) 41, 92
AluI AGCT 2 cut(s) 41, 92
Alw21I GWGCWC 1 cut(s) 333
Alw44I GTGCAC 1 cut(s) 329
AlwNI CAGNNNCTG 1 cut(s) 68
AoxI GGCC 2 cut(s) 218, 365
ApaLI GTGCAC 1 cut(s) 329
ApeKI GCWGC 1 cut(s) 62
ArsI GACNNNNNNTTYG 2 cut(s) 293, 325
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 2 cut(s) 183, 394
AsuHPI GGTGA 2 cut(s) 311, 434
AvaII GGWCC 2 cut(s) 183, 394
BaeGI GKGCMC 2 cut(s) 199, 333
BbrPI CACGTG 1 cut(s) 334
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 1 cut(s) 74
BccI CCATC 3 cut(s) 5, 37, 233
BciT130I CCWGG 1 cut(s) 181
BclI TGATCA 1 cut(s) 427
BfmI CTRYAG 2 cut(s) 60, 87
BfoI RGCGCY 1 cut(s) 68
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 1 cut(s) 181
Bme18I GGWCC 2 cut(s) 183, 394
BmeRI GACNNNNNGTC 1 cut(s) 102
BmgT120I GGNCC 2 cut(s) 183, 394
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 181
BmsI GCATC 2 cut(s) 61, 370
BsaAI YACGTR 1 cut(s) 334
BsaHI GRCGYC 2 cut(s) 189, 262
BsaWI WCCGGW 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 192
BseBI CCWGG 1 cut(s) 181
BseGI GGATG 1 cut(s) 244
BseLI CCNNNNNNNGG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 135
BseSI GKGCMC 2 cut(s) 199, 333
BseXI GCAGC 1 cut(s) 74
BshFI GGCC 2 cut(s) 220, 367
BsiHKAI GWGCWC 1 cut(s) 333
BsiSI CCGG 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 192
BsnI GGCC 2 cut(s) 220, 367
Bsp1286I GDGCHC 2 cut(s) 199, 333
Bsp1407I TGTACA 1 cut(s) 336
Bsp143I GATC 2 cut(s) 214, 427
BspANI GGCC 2 cut(s) 220, 367
BspCNI CTCAG 1 cut(s) 136
BspLI GGNNCC 1 cut(s) 51
BspMAI CTGCAG 1 cut(s) 64
BsrGI TGTACA 1 cut(s) 336
BssMI GATC 2 cut(s) 214, 427
BssNI GRCGYC 2 cut(s) 189, 262
Bst2UI CCWGG 1 cut(s) 181
Bst4CI ACNGT 1 cut(s) 284
Bst6I CTCTTC 1 cut(s) 131
BstACI GRCGYC 2 cut(s) 189, 262
BstAUI TGTACA 1 cut(s) 336
BstBAI YACGTR 1 cut(s) 334
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 2 cut(s) 144, 315
BstF5I GGATG 1 cut(s) 244
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 2 cut(s) 217, 430
BstMBI GATC 2 cut(s) 214, 427
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNI CCWGG 1 cut(s) 181
BstSCI CCNGG 1 cut(s) 179
BstSFI CTRYAG 2 cut(s) 60, 87
BstSLI GKGCMC 2 cut(s) 199, 333
BstV1I GCAGC 1 cut(s) 74
BsuRI GGCC 2 cut(s) 220, 367
BtgZI GCGATG 1 cut(s) 15
BtsCI GGATG 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 164
Cac8I GCNNGC 1 cut(s) 351
CaiI CAGNNNCTG 1 cut(s) 68
CfoI GCGC 1 cut(s) 67
Cfr13I GGNCC 2 cut(s) 183, 394
CsiI ACCWGGT 1 cut(s) 179
Csp6I GTAC 2 cut(s) 26, 337
CviAII CATG 1 cut(s) 398
CviJI RGCY 8 cut(s) 5, 41, 85, 92, 128, 143, 220, 367
CviKI_1 RGCY 8 cut(s) 5, 41, 85, 92, 128, 143, 220, 367
CviQI GTAC 2 cut(s) 26, 337
DdeI CTNAG 2 cut(s) 144, 315
DpnI GATC 2 cut(s) 216, 429
DpnII GATC 2 cut(s) 214, 427
DriI GACNNNNNGTC 1 cut(s) 102
EaeI YGGCCR 1 cut(s) 218
Eam1104I CTCTTC 1 cut(s) 131
Eam1105I GACNNNNNGTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 131
Eco47I GGWCC 2 cut(s) 183, 394
Eco72I CACGTG 1 cut(s) 334
EcoRII CCWGG 1 cut(s) 179
FaeI CATG 1 cut(s) 401
FaiI YATR 1 cut(s) 399
FatI CATG 1 cut(s) 397
FbaI TGATCA 1 cut(s) 427
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 1 cut(s) 251
Fsp4HI GCNGC 1 cut(s) 63
GlaI GCGC 1 cut(s) 66
GluI GCNGC 1 cut(s) 63
HaeII RGCGCY 1 cut(s) 68
HaeIII GGCC 2 cut(s) 220, 367
HapII CCGG 1 cut(s) 77
HhaI GCGC 1 cut(s) 67
Hin1I GRCGYC 2 cut(s) 189, 262
Hin1II CATG 1 cut(s) 401
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 1 cut(s) 452
HpaII CCGG 1 cut(s) 77
HphI GGTGA 2 cut(s) 311, 434
Hpy166II GTNNAC 3 cut(s) 280, 331, 337
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 1 cut(s) 160
Hpy8I GTNNAC 3 cut(s) 280, 331, 337
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 2 cut(s) 145, 395
HpyCH4III ACNGT 1 cut(s) 284
HpyCH4IV ACGT 3 cut(s) 189, 262, 333
HpyCH4V TGCA 4 cut(s) 62, 331, 383, 407
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 2 cut(s) 144, 315
HpySE526I ACGT 3 cut(s) 189, 262, 333
Hsp92I GRCGYC 2 cut(s) 189, 262
Hsp92II CATG 1 cut(s) 401
HspAI GCGC 1 cut(s) 65
Ksp22I TGATCA 1 cut(s) 427
Kzo9I GATC 2 cut(s) 214, 427
LmnI GCTCC 2 cut(s) 46, 79
Lsp1109I GCAGC 1 cut(s) 74
LweI GCATC 2 cut(s) 61, 370
MabI ACCWGGT 1 cut(s) 179
MaeII ACGT 3 cut(s) 189, 262, 333
MaeIII GTNAC 2 cut(s) 172, 299
MalI GATC 2 cut(s) 216, 429
MboI GATC 2 cut(s) 214, 427
MboII GAAGA 2 cut(s) 148, 160
MhlI GDGCHC 2 cut(s) 199, 333
MluCI AATT 3 cut(s) 267, 361, 442
MmeI TCCRAC 2 cut(s) 210, 238
MnlI CCTC 3 cut(s) 120, 126, 132
MseI TTAA 1 cut(s) 81
MslI CAYNNNNRTG 1 cut(s) 402
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 181
MvaI CCWGG 1 cut(s) 181
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 2 cut(s) 214, 427
NlaIII CATG 1 cut(s) 401
NlaIV GGNNCC 1 cut(s) 51
NmuCI GTSAC 2 cut(s) 172, 299
PfeI GAWTC 1 cut(s) 452
PkrI GCNGC 1 cut(s) 64
PmaCI CACGTG 1 cut(s) 334
PmlI CACGTG 1 cut(s) 334
Ppu21I YACGTR 1 cut(s) 334
Psp6I CCWGG 1 cut(s) 179
PspCI CACGTG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 179
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 2 cut(s) 183, 394
PstI CTGCAG 1 cut(s) 64
PstNI CAGNNNCTG 1 cut(s) 68
RsaI GTAC 2 cut(s) 27, 338
RsaNI GTAC 2 cut(s) 26, 337
RseI CAYNNNNRTG 1 cut(s) 402
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 2 cut(s) 214, 427
Sau96I GGNCC 2 cut(s) 183, 394
ScrFI CCNGG 1 cut(s) 181
SduI GDGCHC 2 cut(s) 199, 333
SetI ASST 9 cut(s) 43, 94, 185, 192, 265, 330, 336, 396, 406
SexAI ACCWGGT 1 cut(s) 179
SfaNI GCATC 2 cut(s) 61, 370
SfcI CTRYAG 2 cut(s) 60, 87
SinI GGWCC 2 cut(s) 183, 394
SmiMI CAYNNNNRTG 1 cut(s) 402
Sse9I AATT 3 cut(s) 267, 361, 442
StyD4I CCNGG 1 cut(s) 179
TaaI ACNGT 1 cut(s) 284
TaiI ACGT 3 cut(s) 192, 265, 336
TaqI TCGA 1 cut(s) 95
TasI AATT 3 cut(s) 267, 361, 442
TatI WGTACW 1 cut(s) 336
TfiI GAWTC 1 cut(s) 452
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TscAI CASTG 1 cut(s) 171
TseFI GTSAC 2 cut(s) 172, 299
TseI GCWGC 1 cut(s) 62
Tsp45I GTSAC 2 cut(s) 172, 299
TspDTI ATGAA 1 cut(s) 414
TspRI CASTG 1 cut(s) 171
VneI GTGCAC 1 cut(s) 329
VpaK11BI GGWCC 2 cut(s) 183, 394
ZraI GACGTC 2 cut(s) 190, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.