Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001940

Physical Location & Seq

Genomic Coordinates Reverse (-)

93222626 .. 93225476

Gene Structure 2851 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG542700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAGTAAACAATCAAAAATTCATGGATTTTTCAAAAGGAAGAATGCCCAATCTGATGCTAGTACTTCAGTGCCTCCACCATTGCCCAACTCCGGTACTGAAGCATCAACACCATTGCCCAACTCCGGTACTGAAGCATCAGCTTTAGATCCTCGTGAAATTTGTAAATCGAGACGCTATAATCCACATCATAAGCGAACTCGAAGCCAGAGAATAGGAGCCCGTTGTTCTTCAGCATGGCTACTGATGGCTATTGTTTCATCATCGACAGCTCCAGTTGAACCCGACCCAGCAGCTCCAATTGCACCAACAGCTCCGACATCTGCTCGTCCTCCCAGACCAGTCAAAGGCAAGAGGAAGAGGGCGGAGAAGAAGCCAGTCAAGTCCCTGAAGGTCCAGATGCGGTCCGACGTATGGGTGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

15.33

Weight (kDa)

11.02

Isoelectric Point (pI)

66.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001940)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0054121 RchiOBHm_Chr5g0075631 RchiOBHm_Chr7g0218761
rosa_laevigata	RLG00000019954
rosa_multiflora	Rmu_co8337375.1_g000001 Rmu_sc0002724.1_g000041 Rmu_sc0003010.1_g000001 Rmu_ssc0000055.1_g000007
rosa_roxburghii	Rroxscaffold_2G00134930 Rroxscaffold_3G00245470
rosa_rugosa	Rorug02G0540100 Rorug04G0078000 Rorug07G0291900
rosa_samantha	Rh1AG017000 Rh1BG425200 Rh1CG073600 Rh1CG400600 Rh1DG047900 Rh1DG080500 Rh1DG458000 Rh2AG189900 Rh2DG158300 Rh2DG556600 Rh3AG195400 Rh3AG237500 Rh3BG189900 Rh3BG225600 Rh3BG288600 Rh3CG179800 Rh3CG220400 Rh3CG270300 Rh3DG221000 Rh4AG241700 Rh5AG065800 Rh5AG087600 Rh5AG472000 Rh5AG542700 Rh5BG423000 Rh5CG282600 Rh5DG082100 Rh6AG078100 Rh6BG094300 Rh6CG332600 Rh6DG209500 Rh7AG037100 Rh7DG465800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	365, 403
AclWI	GGATC	1 cut(s)	143
AcsI	RAATTY	2 cut(s)	18, 159
AcuI	CTGAAG	5 cut(s)	51, 120, 153, 216, 410
AfaI	GTAC	3 cut(s)	64, 97, 130
AfiI	CCNNNNNNNGG	4 cut(s)	92, 125, 347, 414
AgsI	TTSAA	2 cut(s)	34, 281
AluBI	AGCT	4 cut(s)	143, 272, 296, 314
AluI	AGCT	4 cut(s)	143, 272, 296, 314
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	1 cut(s)	143
ApeKI	GCWGC	1 cut(s)	293
ApoI	RAATTY	2 cut(s)	18, 159
AspS9I	GGNCC	2 cut(s)	394, 405
AvaII	GGWCC	2 cut(s)	394, 405
BanII	GRGCYC	1 cut(s)	223
BauI	CACGAG	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	305
BccI	CCATC	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	1 cut(s)	60
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
BmcAI	AGTACT	1 cut(s)	64
Bme18I	GGWCC	2 cut(s)	394, 405
BmgT120I	GGNCC	2 cut(s)	394, 405
BmiI	GGNNCC	1 cut(s)	220
BmsI	GCATC	4 cut(s)	46, 113, 146, 390
BpmI	CTGGAG	1 cut(s)	258
BsaWI	WCCGGW	2 cut(s)	92, 125
Bsc4I	CCNNNNNNNGG	4 cut(s)	92, 125, 347, 414
Bse1I	ACTGG	3 cut(s)	275, 341, 377
Bse3DI	GCAATG	2 cut(s)	80, 113
BseLI	CCNNNNNNNGG	4 cut(s)	92, 125, 347, 414
BseMI	GCAATG	2 cut(s)	80, 113
BseNI	ACTGG	3 cut(s)	275, 341, 377
BseXI	GCAGC	1 cut(s)	305
BseYI	CCCAGC	1 cut(s)	289
BsiSI	CCGG	2 cut(s)	93, 126
BslFI	GGGAC	1 cut(s)	370
BslI	CCNNNNNNNGG	4 cut(s)	92, 125, 347, 414
BsmAI	GTCTC	1 cut(s)	166
BsmBI	CGTCTC	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	370
BsmI	GAATGC	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	1 cut(s)	148
BspACI	CCGC	2 cut(s)	365, 403
BspLI	GGNNCC	1 cut(s)	220
BspPI	GGATC	1 cut(s)	143
BsrDI	GCAATG	2 cut(s)	80, 113
BsrI	ACTGG	3 cut(s)	275, 341, 377
BssMI	GATC	1 cut(s)	148
BssSI	CACGAG	1 cut(s)	153
Bst2BI	CACGAG	1 cut(s)	153
Bst6I	CTCTTC	1 cut(s)	353
BstKTI	GATC	1 cut(s)	151
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	1 cut(s)	148
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 311
BstV1I	GCAGC	1 cut(s)	305
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BtsIMutI	CAGTG	1 cut(s)	75
Cfr13I	GGNCC	2 cut(s)	394, 405
CpoI	CGGWCCG	1 cut(s)	405
CseI	GACGC	1 cut(s)	183
Csp6I	GTAC	3 cut(s)	63, 96, 129
CspI	CGGWCCG	1 cut(s)	405
CviAII	CATG	2 cut(s)	23, 237
CviJI	RGCY	9 cut(s)	143, 207, 221, 241, 251, 272, 296, 314, 376
CviKI_1	RGCY	9 cut(s)	143, 207, 221, 241, 251, 272, 296, 314, 376
CviQI	GTAC	3 cut(s)	63, 96, 129
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
EciI	GGCGGA	1 cut(s)	380
Eco24I	GRGCYC	1 cut(s)	223
Eco47I	GGWCC	2 cut(s)	394, 405
Eco57I	CTGAAG	5 cut(s)	51, 120, 153, 216, 410
EcoT38I	GRGCYC	1 cut(s)	223
Esp3I	CGTCTC	1 cut(s)	166
FaeI	CATG	2 cut(s)	26, 240
FaiI	YATR	5 cut(s)	24, 180, 192, 238, 415
FaqI	GGGAC	1 cut(s)	370
FatI	CATG	2 cut(s)	22, 236
Fnu4HI	GCNGC	1 cut(s)	294
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	1 cut(s)	60
GluI	GCNGC	1 cut(s)	294
GsaI	CCCAGC	1 cut(s)	293
GsuI	CTGGAG	1 cut(s)	258
HapII	CCGG	2 cut(s)	93, 126
HgaI	GACGC	1 cut(s)	183
Hin1II	CATG	2 cut(s)	26, 240
HpaII	CCGG	2 cut(s)	93, 126
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188I	TCNGA	3 cut(s)	55, 318, 409
Hpy188III	TCNNGA	3 cut(s)	155, 171, 397
Hpy8I	GTNNAC	1 cut(s)	8
Hpy99I	CGWCG	1 cut(s)	413
HpyAV	CCTTC	1 cut(s)	385
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	1 cut(s)	305
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 311
HpySE526I	ACGT	1 cut(s)	411
Hsp92II	CATG	2 cut(s)	26, 240
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	4 cut(s)	218, 277, 301, 319
Lsp1109I	GCAGC	1 cut(s)	305
LweI	GCATC	4 cut(s)	46, 113, 146, 390
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	1 cut(s)	411
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	4 cut(s)	52, 222, 370, 382
MfeI	CAATTG	1 cut(s)	300
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	3 cut(s)	18, 159, 300
MmeI	TCCRAC	1 cut(s)	341
MnlI	CCTC	5 cut(s)	84, 162, 342, 348, 354
MseI	TTAA	1 cut(s)	424
MspI	CCGG	2 cut(s)	93, 126
MunI	CAATTG	1 cut(s)	300
Mva1269I	GAATGC	1 cut(s)	49
MwoI	GCNNNNNNNGC	2 cut(s)	302, 311
NdeII	GATC	1 cut(s)	148
NlaIII	CATG	2 cut(s)	26, 240
NlaIV	GGNNCC	1 cut(s)	220
NmuCI	GTSAC	1 cut(s)	418
PctI	GAATGC	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	295
PspFI	CCCAGC	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	220
PspPI	GGNCC	2 cut(s)	394, 405
PsuI	RGATCY	1 cut(s)	148
RsaI	GTAC	3 cut(s)	64, 97, 130
RsaNI	GTAC	3 cut(s)	63, 96, 129
Rsr2I	CGGWCCG	1 cut(s)	405
RsrII	CGGWCCG	1 cut(s)	405
SaqAI	TTAA	1 cut(s)	424
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	1 cut(s)	148
Sau96I	GGNCC	2 cut(s)	394, 405
ScaI	AGTACT	1 cut(s)	64
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	6 cut(s)	145, 274, 298, 316, 396, 414
SfaNI	GCATC	4 cut(s)	46, 113, 146, 390
SinI	GGWCC	2 cut(s)	394, 405
Sse9I	AATT	3 cut(s)	18, 159, 300
SsiI	CCGC	2 cut(s)	365, 403
SspMI	CTAG	1 cut(s)	60
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	3 cut(s)	170, 202, 266
TasI	AATT	3 cut(s)	18, 159, 300
TatI	WGTACW	1 cut(s)	62
Tru1I	TTAA	1 cut(s)	424
Tru9I	TTAA	1 cut(s)	424
TscAI	CASTG	1 cut(s)	75
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	2 cut(s)	11, 249
TspRI	CASTG	1 cut(s)	75
VpaK11BI	GGWCC	2 cut(s)	394, 405
XapI	RAATTY	2 cut(s)	18, 159
XspI	CTAG	1 cut(s)	60
ZrmI	AGTACT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.