Rroxscaffold_2G00134930

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
72528800 .. 72530268
1469 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00134930.1

Sequence Viewer

Length: 213 bp
ATGGCTACTGATGGGAAGGCTATTGTTTCATCATCGACAGCTCCAGTTGAACCAGACCGAGCAGCTCCAATTGCACCAACAACTCCAATTGTACCTTCAATTGGTCTTGATGATTATTTGTATTTGAATTCGAATTTCCAGCTTGAACTTTGTATCTTGATATTGTGTTTTGATTCAAATCTTCAACAGCTTGAAATTTGCAACTATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.6

Weight (kDa)

4.05

Isoelectric Point (pI)

48.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 127, 133, 195
AfaI GTAC 1 cut(s) 93
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 7 cut(s) 50, 99, 127, 146, 177, 185, 194
AjuI GAANNNNNNNTTGG 2 cut(s) 79, 111
AluBI AGCT 4 cut(s) 41, 65, 142, 190
AluI AGCT 4 cut(s) 41, 65, 142, 190
ApeKI GCWGC 1 cut(s) 62
ApoI RAATTY 3 cut(s) 127, 133, 195
AsuII TTCGAA 1 cut(s) 131
BbvI GCAGC 1 cut(s) 74
BccI CCATC 1 cut(s) 5
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
BpmI CTGGAG 1 cut(s) 27
Bpu14I TTCGAA 1 cut(s) 131
BsaBI GATNNNNATC 1 cut(s) 177
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 44
Bse8I GATNNNNATC 1 cut(s) 177
BseJI GATNNNNATC 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 101
BseNI ACTGG 1 cut(s) 44
BseXI GCAGC 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 101
Bsp119I TTCGAA 1 cut(s) 131
BspT104I TTCGAA 1 cut(s) 131
BsrI ACTGG 1 cut(s) 44
BstBI TTCGAA 1 cut(s) 131
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 92
CviJI RGCY 6 cut(s) 5, 20, 41, 65, 142, 190
CviKI_1 RGCY 6 cut(s) 5, 20, 41, 65, 142, 190
CviQI GTAC 1 cut(s) 92
EcoRI GAATTC 1 cut(s) 127
FaiI YATR 3 cut(s) 207, 209, 211
Fnu4HI GCNGC 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 63
GluI GCNGC 1 cut(s) 63
GsuI CTGGAG 1 cut(s) 27
HinfI GANTC 1 cut(s) 173
Hpy188III TCNNGA 2 cut(s) 107, 157
HpyAV CCTTC 2 cut(s) 10, 105
HpyCH4V TGCA 2 cut(s) 74, 201
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
LmnI GCTCC 2 cut(s) 46, 70
LpnPI CCDG 3 cut(s) 57, 66, 152
Lsp1109I GCAGC 1 cut(s) 74
MboII GAAGA 1 cut(s) 173
MfeI CAATTG 3 cut(s) 69, 87, 99
MluCI AATT 6 cut(s) 69, 87, 99, 127, 133, 195
MunI CAATTG 3 cut(s) 69, 87, 99
MwoI GCNNNNNNNGC 1 cut(s) 71
NspV TTCGAA 1 cut(s) 131
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 1 cut(s) 64
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
SatI GCNGC 1 cut(s) 63
SetI ASST 5 cut(s) 43, 67, 97, 144, 192
SfuI TTCGAA 1 cut(s) 131
SgeI CNNG 8 cut(s) 56, 65, 71, 119, 151, 155, 169, 203
Sse9I AATT 6 cut(s) 69, 87, 99, 127, 133, 195
TaqI TCGA 2 cut(s) 35, 131
TaqII GACCGA 1 cut(s) 72
TasI AATT 6 cut(s) 69, 87, 99, 127, 133, 195
TfiI GAWTC 1 cut(s) 173
TseI GCWGC 1 cut(s) 62
TspDTI ATGAA 1 cut(s) 18
XapI RAATTY 3 cut(s) 127, 133, 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.