Rorug04G0078000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001940
Physical Location & Seq
Reverse (-)
12033673 .. 12034470
798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0078000.1

Sequence Viewer

Length: 798 bp
ATGATCTCTAGTGGACTAAAGAACCGGCACATTGGTCGAAATCTTCATCTCCACCCTGTCCTAATGGCCTGGGGATACTTCCCTGACTCGATTAATTCAGAATTCAAGGGTAAAAGCTATGAGGGTGGAATAATCACATCGGTCCATGAGGTCGTATCAGCAGACTCTAGGCCAAGAGCCATCATTGAAACTCCTGCATTAGGACCTGGAGCATTTGCTGCTTTGTGCCCCTGGGAGTCTGGACTAGACATAAAGAGAAGAATGCTGAGATTTTCAAGAACCGCACATTTGATTACAATAATCCGGGATAAGGGTTCCGGGGTTATTAGGACAGAGGGAAGAGCAAGCTTTGAGCTTGATGCATTAGACAAAGAGAACATGAAGGCTGGCTTGAGGCAGGCACTTAGGATTCTGATAGCAGCAGGAGCAGTTGAAGTTGGCACTCACCGCAGTGATGGGCTGAGACTCAAATGCGAAGGGACTGATGAGAAGGAACTGGAGGAGTTTTTGGACGAAGTTTCTGCAGATGAAGGGCCACAGTCACTGGTAGAGAAATGGGCACCCTATTCCTCAGCTCATCAAATGGGGAGCTGTAGAATGGGAATCAATGAAAAAGAAGGCGCGGTTGATCAGAATGGGGAGAGCTGGGAAGCCGAAGGCCTATTTGTCTGTGATGGCAGTGTGTTGCCTAGTGCTGTTGGTGTCAATCCGATGATCACCATCGAATCAACTGCTTACTGTCTCTCAAAGAGACTAGCAGAATCTCTAGGAAAACAACAGTTTTCCAATGATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

265

Amino Acids

28.85

Weight (kDa)

5.58

Isoelectric Point (pI)

38.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GMC_oxred_C PF05199 117 - 242 1.1e-22 GMC oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 559
AccII CGCG 1 cut(s) 623
AciI CCGC 3 cut(s) 282, 448, 623
AcsI RAATTY 1 cut(s) 101
AfiI CCNNNNNNNGG 2 cut(s) 200, 310
AgsI TTSAA 4 cut(s) 106, 188, 276, 434
AjnI CCWGG 3 cut(s) 68, 205, 230
AleI CACNNNNGTG 1 cut(s) 450
AluBI AGCT 6 cut(s) 117, 348, 355, 575, 591, 645
AluI AGCT 6 cut(s) 117, 348, 355, 575, 591, 645
Alw26I GTCTC 3 cut(s) 457, 745, 746
AlwNI CAGNNNCTG 1 cut(s) 544
AoxI GGCC 4 cut(s) 66, 170, 533, 658
ApeKI GCWGC 2 cut(s) 218, 419
ApoI RAATTY 1 cut(s) 101
AseI ATTAAT 1 cut(s) 93
AspLEI GCGC 1 cut(s) 623
AspS9I GGNCC 3 cut(s) 142, 203, 533
AsuC2I CCSGG 2 cut(s) 305, 319
AsuHPI GGTGA 2 cut(s) 437, 709
AvaII GGWCC 2 cut(s) 142, 203
BaeGI GKGCMC 2 cut(s) 230, 562
BanI GGYRCC 1 cut(s) 559
BbvCI CCTCAGC 1 cut(s) 571
BbvI GCAGC 2 cut(s) 205, 431
BccI CCATC 5 cut(s) 188, 449, 668, 728, 785
BcgI CGANNNNNNTGC 6 cut(s) 17, 51, 503, 537, 713, 747
BciT130I CCWGG 3 cut(s) 70, 207, 232
BciVI GTATCC 1 cut(s) 68
BclI TGATCA 2 cut(s) 628, 714
BcnI CCSGG 2 cut(s) 305, 319
BcoDI GTCTC 3 cut(s) 457, 745, 746
BfaI CTAG 6 cut(s) 9, 168, 245, 690, 755, 767
BfmI CTRYAG 2 cut(s) 522, 592
BfuI GTATCC 1 cut(s) 68
BisI GCNGC 2 cut(s) 219, 420
BlsI GCNGC 2 cut(s) 220, 421
Bme1390I CCNGG 5 cut(s) 70, 207, 232, 305, 319
Bme18I GGWCC 2 cut(s) 142, 203
BmgT120I GGNCC 3 cut(s) 142, 203, 533
BmiI GGNNCC 2 cut(s) 316, 561
BmrFI CCNGG 5 cut(s) 70, 207, 232, 305, 319
BmsI GCATC 1 cut(s) 349
BpmI CTGGAG 2 cut(s) 228, 518
Bpu10I CCTNAGC 1 cut(s) 571
BpuEI CTTGAG 1 cut(s) 412
BpuMI CCSGG 2 cut(s) 305, 319
BsaBI GATNNNNATC 1 cut(s) 719
BsaJI CCNNGG 4 cut(s) 69, 230, 231, 318
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 310
Bse118I RCCGGY 1 cut(s) 24
Bse1I ACTGG 2 cut(s) 501, 549
Bse8I GATNNNNATC 1 cut(s) 719
BseBI CCWGG 3 cut(s) 70, 207, 232
BseDI CCNNGG 4 cut(s) 69, 230, 231, 318
BseJI GATNNNNATC 1 cut(s) 719
BseLI CCNNNNNNNGG 2 cut(s) 200, 310
BseMII CTCAG 3 cut(s) 257, 452, 585
BseNI ACTGG 2 cut(s) 501, 549
BseRI GAGGAG 1 cut(s) 515
BseSI GKGCMC 2 cut(s) 230, 562
BseXI GCAGC 2 cut(s) 205, 431
BseYI CCCAGC 1 cut(s) 645
Bsh1236I CGCG 1 cut(s) 623
BshFI GGCC 4 cut(s) 68, 172, 535, 660
BshNI GGYRCC 1 cut(s) 559
BsiSI CCGG 3 cut(s) 25, 304, 318
BslFI GGGAC 1 cut(s) 493
BslI CCNNNNNNNGG 2 cut(s) 200, 310
BsmAI GTCTC 3 cut(s) 457, 745, 746
BsmFI GGGAC 1 cut(s) 493
BsmI GAATGC 1 cut(s) 267
BsnI GGCC 4 cut(s) 68, 172, 535, 660
Bsp1286I GDGCHC 2 cut(s) 230, 562
Bsp143I GATC 3 cut(s) 3, 628, 714
BspACI CCGC 3 cut(s) 282, 448, 623
BspANI GGCC 4 cut(s) 68, 172, 535, 660
BspCNI CTCAG 3 cut(s) 258, 453, 584
BspFNI CGCG 1 cut(s) 623
BspLI GGNNCC 2 cut(s) 316, 561
BspMAI CTGCAG 1 cut(s) 526
BspQI GCTCTTC 1 cut(s) 334
BspT107I GGYRCC 1 cut(s) 559
BsrFI RCCGGY 1 cut(s) 24
BsrI ACTGG 2 cut(s) 501, 549
BssAI RCCGGY 1 cut(s) 24
BssECI CCNNGG 4 cut(s) 69, 230, 231, 318
BssMI GATC 3 cut(s) 3, 628, 714
Bst2UI CCWGG 3 cut(s) 70, 207, 232
Bst4CI ACNGT 3 cut(s) 540, 740, 780
Bst6I CTCTTC 1 cut(s) 334
BstAPI GCANNNNNTGC 1 cut(s) 218
BstC8I GCNNGC 3 cut(s) 346, 388, 399
BstDEI CTNAG 4 cut(s) 266, 404, 461, 571
BstENI CCTNNNNNAGG 1 cut(s) 198
BstFNI CGCG 1 cut(s) 623
BstHHI GCGC 1 cut(s) 623
BstKTI GATC 3 cut(s) 6, 631, 717
BstMAI GTCTC 3 cut(s) 457, 745, 746
BstMBI GATC 3 cut(s) 3, 628, 714
BstMWI GCNNNNNNNGC 3 cut(s) 218, 425, 447
BstNI CCWGG 3 cut(s) 70, 207, 232
BstSCI CCNGG 5 cut(s) 68, 205, 230, 303, 317
BstSFI CTRYAG 2 cut(s) 522, 592
BstSLI GKGCMC 2 cut(s) 230, 562
BstUI CGCG 1 cut(s) 623
BstV1I GCAGC 2 cut(s) 205, 431
BsuI GTATCC 1 cut(s) 68
BsuRI GGCC 4 cut(s) 68, 172, 535, 660
BtsI GCAGTG 2 cut(s) 457, 685
BtsIMutI CAGTG 3 cut(s) 457, 542, 685
Cac8I GCNNGC 3 cut(s) 346, 388, 399
CaiI CAGNNNCTG 1 cut(s) 544
CfoI GCGC 1 cut(s) 623
Cfr10I RCCGGY 1 cut(s) 24
Cfr13I GGNCC 3 cut(s) 142, 203, 533
CviAII CATG 2 cut(s) 146, 379
DdeI CTNAG 4 cut(s) 266, 404, 461, 571
DpnI GATC 3 cut(s) 5, 630, 716
DpnII GATC 3 cut(s) 3, 628, 714
Eam1104I CTCTTC 1 cut(s) 334
EarI CTCTTC 1 cut(s) 334
Eco147I AGGCCT 1 cut(s) 660
Eco47I GGWCC 2 cut(s) 142, 203
EcoNI CCTNNNNNAGG 1 cut(s) 198
EcoO109I RGGNCCY 1 cut(s) 203
EcoRI GAATTC 1 cut(s) 101
EcoRII CCWGG 3 cut(s) 68, 205, 230
EcoT22I ATGCAT 1 cut(s) 364
FaeI CATG 2 cut(s) 149, 382
FaiI YATR 4 cut(s) 120, 147, 251, 380
FalI AAGNNNNNCTT 2 cut(s) 374, 406
FaqI GGGAC 1 cut(s) 493
FatI CATG 2 cut(s) 145, 378
FbaI TGATCA 2 cut(s) 628, 714
Fnu4HI GCNGC 2 cut(s) 219, 420
Fsp4HI GCNGC 2 cut(s) 219, 420
FspBI CTAG 6 cut(s) 9, 168, 245, 690, 755, 767
GlaI GCGC 1 cut(s) 622
GluI GCNGC 2 cut(s) 219, 420
GsaI CCCAGC 1 cut(s) 649
GsuI CTGGAG 2 cut(s) 228, 518
HaeIII GGCC 4 cut(s) 68, 172, 535, 660
HapII CCGG 3 cut(s) 25, 304, 318
HhaI GCGC 1 cut(s) 623
Hin1II CATG 2 cut(s) 149, 382
Hin6I GCGC 1 cut(s) 621
HinP1I GCGC 1 cut(s) 621
HindIII AAGCTT 1 cut(s) 346
HinfI GANTC 8 cut(s) 86, 164, 236, 409, 465, 603, 725, 761
HpaII CCGG 3 cut(s) 25, 304, 318
HphI GGTGA 2 cut(s) 437, 709
Hpy166II GTNNAC 1 cut(s) 14
Hpy188I TCNGA 4 cut(s) 100, 414, 633, 711
Hpy188III TCNNGA 2 cut(s) 240, 276
Hpy8I GTNNAC 1 cut(s) 14
HpyAV CCTTC 6 cut(s) 376, 470, 484, 524, 611, 650
HpyCH4III ACNGT 3 cut(s) 540, 740, 780
HpyCH4V TGCA 3 cut(s) 197, 362, 524
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 425, 447
HpyF3I CTNAG 4 cut(s) 266, 404, 461, 571
Hsp92II CATG 2 cut(s) 149, 382
HspAI GCGC 1 cut(s) 621
Ksp22I TGATCA 2 cut(s) 628, 714
Kzo9I GATC 3 cut(s) 3, 628, 714
LguI GCTCTTC 1 cut(s) 334
LmnI GCTCC 3 cut(s) 209, 425, 588
Lsp1109I GCAGC 2 cut(s) 205, 431
LweI GCATC 1 cut(s) 349
MaeI CTAG 6 cut(s) 9, 168, 245, 690, 755, 767
MaeIII GTNAC 1 cut(s) 540
MalI GATC 3 cut(s) 5, 630, 716
MboI GATC 3 cut(s) 3, 628, 714
MboII GAAGA 3 cut(s) 35, 270, 351
MhlI GDGCHC 2 cut(s) 230, 562
MluCI AATT 2 cut(s) 94, 101
MlyI GAGTC 4 cut(s) 80, 158, 245, 459
MnlI CCTC 6 cut(s) 115, 142, 328, 387, 493, 580
Mph1103I ATGCAT 1 cut(s) 364
MseI TTAA 1 cut(s) 93
MslI CAYNNNNRTG 1 cut(s) 450
MspI CCGG 3 cut(s) 25, 304, 318
MspR9I CCNGG 5 cut(s) 70, 207, 232, 305, 319
Mva1269I GAATGC 1 cut(s) 267
MvaI CCWGG 3 cut(s) 70, 207, 232
MvnI CGCG 1 cut(s) 623
MwoI GCNNNNNNNGC 3 cut(s) 218, 425, 447
NciI CCSGG 2 cut(s) 305, 319
NdeII GATC 3 cut(s) 3, 628, 714
NlaIII CATG 2 cut(s) 149, 382
NlaIV GGNNCC 2 cut(s) 316, 561
NmuCI GTSAC 1 cut(s) 540
NsiI ATGCAT 1 cut(s) 364
OliI CACNNNNGTG 1 cut(s) 450
PasI CCCWGGG 1 cut(s) 231
PceI AGGCCT 1 cut(s) 660
PciSI GCTCTTC 1 cut(s) 334
PctI GAATGC 1 cut(s) 267
PfeI GAWTC 4 cut(s) 409, 603, 725, 761
PfoI TCCNGGA 1 cut(s) 303
PkrI GCNGC 2 cut(s) 220, 421
PleI GAGTC 4 cut(s) 80, 158, 244, 459
PpsI GAGTC 4 cut(s) 80, 158, 244, 459
PpuMI RGGWCCY 1 cut(s) 203
PshBI ATTAAT 1 cut(s) 93
Psp5II RGGWCCY 1 cut(s) 203
Psp6I CCWGG 3 cut(s) 68, 205, 230
PspFI CCCAGC 1 cut(s) 645
PspGI CCWGG 3 cut(s) 68, 205, 230
PspN4I GGNNCC 2 cut(s) 316, 561
PspPI GGNCC 3 cut(s) 142, 203, 533
PspPPI RGGWCCY 1 cut(s) 203
PstI CTGCAG 1 cut(s) 526
PstNI CAGNNNCTG 1 cut(s) 544
RseI CAYNNNNRTG 1 cut(s) 450
SapI GCTCTTC 1 cut(s) 334
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 2 cut(s) 219, 420
Sau3AI GATC 3 cut(s) 3, 628, 714
Sau96I GGNCC 3 cut(s) 142, 203, 533
SchI GAGTC 4 cut(s) 80, 158, 245, 459
ScrFI CCNGG 5 cut(s) 70, 207, 232, 305, 319
SduI GDGCHC 2 cut(s) 230, 562
SetI ASST 8 cut(s) 119, 153, 208, 350, 357, 577, 593, 647
SfaNI GCATC 1 cut(s) 349
SfcI CTRYAG 2 cut(s) 522, 592
SinI GGWCC 2 cut(s) 142, 203
SmiMI CAYNNNNRTG 1 cut(s) 450
SmlI CTYRAG 1 cut(s) 391
SmoI CTYRAG 1 cut(s) 391
Sse9I AATT 2 cut(s) 94, 101
SseBI AGGCCT 1 cut(s) 660
SsiI CCGC 3 cut(s) 282, 448, 623
SspMI CTAG 6 cut(s) 9, 168, 245, 690, 755, 767
StuI AGGCCT 1 cut(s) 660
StyD4I CCNGG 5 cut(s) 68, 205, 230, 303, 317
TaaI ACNGT 3 cut(s) 540, 740, 780
TaqI TCGA 3 cut(s) 37, 89, 723
TaqII GACCGA 1 cut(s) 130
TasI AATT 2 cut(s) 94, 101
TfiI GAWTC 4 cut(s) 409, 603, 725, 761
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 3 cut(s) 457, 549, 685
TseFI GTSAC 1 cut(s) 540
TseI GCWGC 2 cut(s) 218, 419
Tsp45I GTSAC 1 cut(s) 540
TspDTI ATGAA 4 cut(s) 35, 395, 543, 624
TspRI CASTG 3 cut(s) 457, 549, 685
VpaK11BI GGWCC 2 cut(s) 142, 203
VspI ATTAAT 1 cut(s) 93
XagI CCTNNNNNAGG 1 cut(s) 198
XapI RAATTY 1 cut(s) 101
XspI CTAG 6 cut(s) 9, 168, 245, 690, 755, 767
Zsp2I ATGCAT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.