Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001940

Physical Location & Seq

Genomic Coordinates Forward (+)

2545773 .. 2547799

Gene Structure 2027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG037100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGTTCGCCAACAGAACCCACGGGCTTAAATCCGGACCGGCCCGCGCTTCTCCTCTGGCCGCTTCCGCCATCTCCGCCATCTCCAAGACCTCTCTCTCTCGGCGCTTACTCGATCTGGGCAGGACTAGAGTCTTCCACCCGATCTCCGATTCTCACCGATCCGCCGCTTCTGAGCTCTTCACCCAGGGATCCTTCGACAGTAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

69

Amino Acids

7.4

Weight (kDa)

11.63

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001940)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0054121 RchiOBHm_Chr5g0075631 RchiOBHm_Chr7g0218761
rosa_laevigata	RLG00000019954
rosa_multiflora	Rmu_co8337375.1_g000001 Rmu_sc0002724.1_g000041 Rmu_sc0003010.1_g000001 Rmu_ssc0000055.1_g000007
rosa_roxburghii	Rroxscaffold_2G00134930 Rroxscaffold_3G00245470
rosa_rugosa	Rorug02G0540100 Rorug04G0078000 Rorug07G0291900
rosa_samantha	Rh1AG017000 Rh1BG425200 Rh1CG073600 Rh1CG400600 Rh1DG047900 Rh1DG080500 Rh1DG458000 Rh2AG189900 Rh2DG158300 Rh2DG556600 Rh3AG195400 Rh3AG237500 Rh3BG189900 Rh3BG225600 Rh3BG288600 Rh3CG179800 Rh3CG220400 Rh3CG270300 Rh3DG221000 Rh4AG241700 Rh5AG065800 Rh5AG087600 Rh5AG472000 Rh5AG542700 Rh5BG423000 Rh5CG282600 Rh5DG082100 Rh6AG078100 Rh6BG094300 Rh6CG332600 Rh6DG209500 Rh7AG037100 Rh7DG465800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	45
AccIII	TCCGGA	1 cut(s)	32
AciI	CCGC	6 cut(s)	43, 60, 66, 75, 162, 165
AclWI	GGATC	3 cut(s)	153, 183, 196
AcoI	YGGCCR	1 cut(s)	57
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
Alw21I	GWGCWC	1 cut(s)	177
AlwI	GGATC	3 cut(s)	153, 183, 196
Aor13HI	TCCGGA	1 cut(s)	32
AoxI	GGCC	2 cut(s)	39, 57
AspLEI	GCGC	2 cut(s)	47, 105
AspS9I	GGNCC	2 cut(s)	35, 40
AsuHPI	GGTGA	2 cut(s)	146, 172
AvaII	GGWCC	1 cut(s)	35
BamHI	GGATCC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	177
BccI	CCATC	2 cut(s)	77, 86
BciT130I	CCWGG	1 cut(s)	185
BfaI	CTAG	1 cut(s)	126
BfoI	RGCGCY	1 cut(s)	106
BisI	GCNGC	2 cut(s)	60, 165
BlsI	GCNGC	2 cut(s)	61, 166
Bme1390I	CCNGG	1 cut(s)	185
Bme18I	GGWCC	1 cut(s)	35
BmgT120I	GGNCC	2 cut(s)	35, 40
BmiI	GGNNCC	1 cut(s)	190
BmrFI	CCNGG	1 cut(s)	185
BoxI	GACNNNNGTC	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	124
BsaJI	CCNNGG	3 cut(s)	19, 183, 184
BsaWI	WCCGGW	1 cut(s)	32
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bse118I	RCCGGY	1 cut(s)	37
BseAI	TCCGGA	1 cut(s)	32
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	3 cut(s)	19, 183, 184
BseMII	CTCAG	1 cut(s)	162
BseRI	GAGGAG	1 cut(s)	42
Bsh1236I	CGCG	1 cut(s)	45
BshFI	GGCC	2 cut(s)	41, 59
BsiHKAI	GWGCWC	1 cut(s)	177
BsiSI	CCGG	2 cut(s)	33, 38
BsnI	GGCC	2 cut(s)	41, 59
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp13I	TCCGGA	1 cut(s)	32
Bsp143I	GATC	4 cut(s)	112, 141, 158, 188
BspACI	CCGC	6 cut(s)	43, 60, 66, 75, 162, 165
BspANI	GGCC	2 cut(s)	41, 59
BspCNI	CTCAG	1 cut(s)	163
BspEI	TCCGGA	1 cut(s)	32
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	190
BspPI	GGATC	3 cut(s)	153, 183, 196
BspQI	GCTCTTC	1 cut(s)	182
BsrFI	RCCGGY	1 cut(s)	37
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	3 cut(s)	19, 183, 184
BssMI	GATC	4 cut(s)	112, 141, 158, 188
Bst2UI	CCWGG	1 cut(s)	185
Bst4CI	ACNGT	1 cut(s)	200
Bst6I	CTCTTC	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	171
BstDSI	CCRYGG	1 cut(s)	19
BstFNI	CGCG	1 cut(s)	45
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	2 cut(s)	47, 105
BstKTI	GATC	4 cut(s)	115, 144, 161, 191
BstMBI	GATC	4 cut(s)	112, 141, 158, 188
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 74
BstNI	CCWGG	1 cut(s)	185
BstPAI	GACNNNNGTC	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	183
BstUI	CGCG	1 cut(s)	45
BstV2I	GAAGAC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	188
BstYI	RGATCY	1 cut(s)	188
BsuRI	GGCC	2 cut(s)	41, 59
BtgI	CCRYGG	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	43
CfoI	GCGC	2 cut(s)	47, 105
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	2 cut(s)	35, 40
CpoI	CGGWCCG	1 cut(s)	35
CspI	CGGWCCG	1 cut(s)	35
CviJI	RGCY	4 cut(s)	25, 41, 59, 175
CviKI_1	RGCY	4 cut(s)	25, 41, 59, 175
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	4 cut(s)	114, 143, 160, 190
DpnII	GATC	4 cut(s)	112, 141, 158, 188
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
EciI	GGCGGA	3 cut(s)	55, 64, 151
Ecl136II	GAGCTC	1 cut(s)	175
Eco24I	GRGCYC	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	35
Eco53kI	GAGCTC	1 cut(s)	175
EcoICRI	GAGCTC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	177
FauI	CCCGC	1 cut(s)	50
Fnu4HI	GCNGC	2 cut(s)	60, 165
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	2 cut(s)	60, 165
FspBI	CTAG	1 cut(s)	126
GlaI	GCGC	2 cut(s)	46, 104
GluI	GCNGC	2 cut(s)	60, 165
HaeII	RGCGCY	1 cut(s)	106
HaeIII	GGCC	2 cut(s)	41, 59
HapII	CCGG	2 cut(s)	33, 38
HhaI	GCGC	2 cut(s)	47, 105
Hin6I	GCGC	2 cut(s)	45, 103
HinP1I	GCGC	2 cut(s)	45, 103
HinfI	GANTC	2 cut(s)	129, 149
HpaII	CCGG	2 cut(s)	33, 38
HphI	GGTGA	2 cut(s)	146, 172
Hpy188I	TCNGA	2 cut(s)	148, 172
Hpy188III	TCNNGA	1 cut(s)	33
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	1 cut(s)	200
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 74
HpyF3I	CTNAG	1 cut(s)	171
HspAI	GCGC	2 cut(s)	45, 103
Kpn2I	TCCGGA	1 cut(s)	32
Kzo9I	GATC	4 cut(s)	112, 141, 158, 188
LguI	GCTCTTC	1 cut(s)	182
LpnPI	CCDG	7 cut(s)	41, 46, 51, 101, 106, 170, 197
MaeI	CTAG	1 cut(s)	126
MalI	GATC	4 cut(s)	114, 143, 160, 190
MboI	GATC	4 cut(s)	112, 141, 158, 188
MboII	GAAGA	2 cut(s)	124, 169
MflI	RGATCY	1 cut(s)	188
MhlI	GDGCHC	1 cut(s)	177
MlyI	GAGTC	1 cut(s)	138
MnlI	CCTC	2 cut(s)	63, 100
MroI	TCCGGA	1 cut(s)	32
MseI	TTAA	1 cut(s)	27
MspI	CCGG	2 cut(s)	33, 38
MspR9I	CCNGG	1 cut(s)	185
MvaI	CCWGG	1 cut(s)	185
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	65, 74
NdeII	GATC	4 cut(s)	112, 141, 158, 188
NlaIV	GGNNCC	1 cut(s)	190
NmeAIII	GCCGAG	1 cut(s)	79
PasI	CCCWGGG	1 cut(s)	184
PciSI	GCTCTTC	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	149
PkrI	GCNGC	2 cut(s)	61, 166
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
PshAI	GACNNNNGTC	1 cut(s)	128
Psp124BI	GAGCTC	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	2 cut(s)	35, 40
PsuI	RGATCY	1 cut(s)	188
Rsr2I	CGGWCCG	1 cut(s)	35
RsrII	CGGWCCG	1 cut(s)	35
SacI	GAGCTC	1 cut(s)	177
SapI	GCTCTTC	1 cut(s)	182
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	2 cut(s)	60, 165
Sau3AI	GATC	4 cut(s)	112, 141, 158, 188
Sau96I	GGNCC	2 cut(s)	35, 40
SchI	GAGTC	1 cut(s)	138
ScrFI	CCNGG	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	2 cut(s)	92, 177
SinI	GGWCC	1 cut(s)	35
SsiI	CCGC	6 cut(s)	43, 60, 66, 75, 162, 165
SspMI	CTAG	1 cut(s)	126
SstI	GAGCTC	1 cut(s)	177
StyD4I	CCNGG	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	200
TaqI	TCGA	2 cut(s)	111, 195
TauI	GCSGC	2 cut(s)	62, 167
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	35
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.