Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002724.1

Orthogroup ID

OG0001940

Physical Location & Seq

Genomic Coordinates Reverse (-)

209138 .. 210702

Gene Structure 1565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002724.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atggctactgatgggagtgctattgtactatcgccgacagctccagtggaaccaaaccctccagcgcctgatgctctgattaagcctacagctccgacatttggtcgtcctccaagaccaacaaaagccaagagaaagagggctcagaagaaggcagtcaagacactgaatgtcacaactaggtccgacgtctgggcacactttgagaagtttgattggccaatagtggaagtggtggatggaaagaagcaggaagttggacgtcaagtaaaagcaaagtgcaggtattattctactgaccttgctggagattcttctttcagtggtactagcacattaagaaggcatattgagactatgtgcaaaaaatacccttgtagggctgatatagaggggcatcaagctttaactagcgatgggatggcttcccatatcccatctagacgtctcattgtaagaaagtttttagaattgtatgatgaaaaaagagaggagctgaaaatggaattaagcaagcatagagtctgtctcactaccgatacatggacatcgagattaattaggacgccggaaatgcaagatggaagtgaaggtgagaagcttatggcggttcagatggctgtgaagatgaggacaaagttctggaagtattttgataacatagatgatatgaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

225

Amino Acids

25.64

Weight (kDa)

9.53

Isoelectric Point (pI)

52.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001940)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0054121 RchiOBHm_Chr5g0075631 RchiOBHm_Chr7g0218761
rosa_laevigata	RLG00000019954
rosa_multiflora	Rmu_co8337375.1_g000001 Rmu_sc0002724.1_g000041 Rmu_sc0003010.1_g000001 Rmu_ssc0000055.1_g000007
rosa_roxburghii	Rroxscaffold_2G00134930 Rroxscaffold_3G00245470
rosa_rugosa	Rorug02G0540100 Rorug04G0078000 Rorug07G0291900
rosa_samantha	Rh1AG017000 Rh1BG425200 Rh1CG073600 Rh1CG400600 Rh1DG047900 Rh1DG080500 Rh1DG458000 Rh2AG189900 Rh2DG158300 Rh2DG556600 Rh3AG195400 Rh3AG237500 Rh3BG189900 Rh3BG225600 Rh3BG288600 Rh3CG179800 Rh3CG220400 Rh3CG270300 Rh3DG221000 Rh4AG241700 Rh5AG065800 Rh5AG087600 Rh5AG472000 Rh5AG542700 Rh5BG423000 Rh5CG282600 Rh5DG082100 Rh6AG078100 Rh6BG094300 Rh6CG332600 Rh6DG209500 Rh7AG037100 Rh7DG465800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	192, 265, 448
Acc36I	ACCTGC	1 cut(s)	273
AciI	CCGC	1 cut(s)	608
AcoI	YGGCCR	1 cut(s)	218
AcyI	GRCGYC	4 cut(s)	189, 262, 445, 566
AfaI	GTAC	2 cut(s)	27, 328
AfiI	CCNNNNNNNGG	4 cut(s)	101, 192, 379, 543
AhdI	GACNNNNNGTC	1 cut(s)	102
AluBI	AGCT	5 cut(s)	41, 92, 404, 496, 601
AluI	AGCT	5 cut(s)	41, 92, 404, 496, 601
Alw26I	GTCTC	3 cut(s)	347, 452, 533
AlwNI	CAGNNNCTG	1 cut(s)	68
AoxI	GGCC	1 cut(s)	218
AseI	ATTAAT	1 cut(s)	557
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	183
AsuHPI	GGTGA	1 cut(s)	605
AvaII	GGWCC	1 cut(s)	183
BaeGI	GKGCMC	1 cut(s)	199
BalI	TGGCCA	1 cut(s)	220
BanII	GRGCYC	1 cut(s)	145
BccI	CCATC	7 cut(s)	5, 233, 410, 415, 445, 575, 610
BcoDI	GTCTC	3 cut(s)	347, 452, 533
BfaI	CTAG	4 cut(s)	180, 330, 411, 441
BfmI	CTRYAG	1 cut(s)	87
BfoI	RGCGCY	1 cut(s)	68
BfuAI	ACCTGC	1 cut(s)	273
Bme18I	GGWCC	1 cut(s)	183
BmeRI	GACNNNNNGTC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	1 cut(s)	51
BmsI	GCATC	2 cut(s)	61, 406
BplI	GAGNNNNNCTC	2 cut(s)	513, 545
BpmI	CTGGAG	3 cut(s)	27, 45, 327
BsaHI	GRCGYC	4 cut(s)	189, 262, 445, 566
Bsc4I	CCNNNNNNNGG	4 cut(s)	101, 192, 379, 543
Bse1I	ACTGG	1 cut(s)	44
BseGI	GGATG	2 cut(s)	244, 426
BseLI	CCNNNNNNNGG	4 cut(s)	101, 192, 379, 543
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	1 cut(s)	44
BseRI	GAGGAG	1 cut(s)	506
BseSI	GKGCMC	1 cut(s)	199
BsgI	GTGCAG	1 cut(s)	301
BshFI	GGCC	1 cut(s)	220
BsiSI	CCGG	1 cut(s)	569
BslI	CCNNNNNNNGG	4 cut(s)	101, 192, 379, 543
BsmAI	GTCTC	3 cut(s)	347, 452, 533
BsmBI	CGTCTC	1 cut(s)	452
BsnI	GGCC	1 cut(s)	220
Bsp1286I	GDGCHC	2 cut(s)	145, 199
BspACI	CCGC	1 cut(s)	608
BspANI	GGCC	1 cut(s)	220
BspCNI	CTCAG	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	51
BspMI	ACCTGC	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	44
BssNI	GRCGYC	4 cut(s)	189, 262, 445, 566
BstACI	GRCGYC	4 cut(s)	189, 262, 445, 566
BstC8I	GCNNGC	1 cut(s)	515
BstDEI	CTNAG	1 cut(s)	144
BstF5I	GGATG	2 cut(s)	244, 426
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	67
BstMAI	GTCTC	3 cut(s)	347, 452, 533
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 574
BstSFI	CTRYAG	1 cut(s)	87
BstSLI	GKGCMC	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	220
BtgZI	GCGATG	1 cut(s)	429
BtsCI	GGATG	2 cut(s)	244, 426
BtsIMutI	CAGTG	3 cut(s)	51, 164, 328
BveI	ACCTGC	1 cut(s)	273
Cac8I	GCNNGC	1 cut(s)	515
CaiI	CAGNNNCTG	1 cut(s)	68
CfoI	GCGC	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	183
CseI	GACGC	1 cut(s)	574
Csp6I	GTAC	2 cut(s)	26, 327
CviAII	CATG	1 cut(s)	543
CviQI	GTAC	2 cut(s)	26, 327
DdeI	CTNAG	1 cut(s)	144
DriI	GACNNNNNGTC	1 cut(s)	102
EaeI	YGGCCR	1 cut(s)	218
Eam1105I	GACNNNNNGTC	1 cut(s)	102
Eco24I	GRGCYC	1 cut(s)	145
Eco47I	GGWCC	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	145
Esp3I	CGTCTC	1 cut(s)	452
FaeI	CATG	1 cut(s)	546
FatI	CATG	1 cut(s)	542
FokI	GGATG	2 cut(s)	251, 433
FriOI	GRGCYC	1 cut(s)	145
FspBI	CTAG	4 cut(s)	180, 330, 411, 441
GlaI	GCGC	1 cut(s)	66
GsuI	CTGGAG	3 cut(s)	27, 45, 327
HaeII	RGCGCY	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	220
HapII	CCGG	1 cut(s)	569
HgaI	GACGC	1 cut(s)	574
HhaI	GCGC	1 cut(s)	67
Hin1I	GRCGYC	4 cut(s)	189, 262, 445, 566
Hin1II	CATG	1 cut(s)	546
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HindIII	AAGCTT	2 cut(s)	402, 599
HinfI	GANTC	2 cut(s)	311, 522
HpaII	CCGG	1 cut(s)	569
HphI	GGTGA	1 cut(s)	605
Hpy188I	TCNGA	5 cut(s)	78, 96, 147, 187, 615
Hpy188III	TCNNGA	4 cut(s)	160, 441, 552, 643
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	3 cut(s)	145, 336, 584
HpyCH4IV	ACGT	3 cut(s)	189, 262, 445
HpyCH4V	TGCA	3 cut(s)	282, 363, 577
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 574
HpyF3I	CTNAG	1 cut(s)	144
HpySE526I	ACGT	3 cut(s)	189, 262, 445
Hsp92I	GRCGYC	4 cut(s)	189, 262, 445, 566
Hsp92II	CATG	1 cut(s)	546
HspAI	GCGC	1 cut(s)	65
LmnI	GCTCC	3 cut(s)	46, 97, 493
LpnPI	CCDG	9 cut(s)	57, 75, 81, 178, 236, 268, 291, 582, 628
LweI	GCATC	2 cut(s)	61, 406
MaeI	CTAG	4 cut(s)	180, 330, 411, 441
MaeII	ACGT	3 cut(s)	189, 262, 445
MaeIII	GTNAC	1 cut(s)	172
MboII	GAAGA	3 cut(s)	160, 306, 637
MhlI	GDGCHC	2 cut(s)	145, 199
MlsI	TGGCCA	1 cut(s)	220
MluCI	AATT	4 cut(s)	470, 506, 558, 673
MluNI	TGGCCA	1 cut(s)	220
MlyI	GAGTC	1 cut(s)	531
MmeI	TCCRAC	3 cut(s)	119, 210, 238
MnlI	CCTC	6 cut(s)	69, 120, 132, 385, 484, 624
Mox20I	TGGCCA	1 cut(s)	220
MscI	TGGCCA	1 cut(s)	220
MseI	TTAA	5 cut(s)	81, 338, 407, 509, 557
Msp20I	TGGCCA	1 cut(s)	220
MspI	CCGG	1 cut(s)	569
MwoI	GCNNNNNNNGC	2 cut(s)	71, 574
NlaIII	CATG	1 cut(s)	546
NlaIV	GGNNCC	1 cut(s)	51
NmuCI	GTSAC	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	311
PleI	GAGTC	1 cut(s)	530
PpsI	GAGTC	1 cut(s)	530
PshBI	ATTAAT	1 cut(s)	557
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	1 cut(s)	183
PstNI	CAGNNNCTG	1 cut(s)	68
RsaI	GTAC	2 cut(s)	27, 328
RsaNI	GTAC	2 cut(s)	26, 327
SaqAI	TTAA	5 cut(s)	81, 338, 407, 509, 557
Sau96I	GGNCC	1 cut(s)	183
SchI	GAGTC	1 cut(s)	531
SduI	GDGCHC	2 cut(s)	145, 199
SfaNI	GCATC	2 cut(s)	61, 406
SfcI	CTRYAG	1 cut(s)	87
SinI	GGWCC	1 cut(s)	183
Sse9I	AATT	4 cut(s)	470, 506, 558, 673
SsiI	CCGC	1 cut(s)	608
SspMI	CTAG	4 cut(s)	180, 330, 411, 441
TaiI	ACGT	3 cut(s)	192, 265, 448
TaqI	TCGA	1 cut(s)	551
TasI	AATT	4 cut(s)	470, 506, 558, 673
TatI	WGTACW	1 cut(s)	25
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	5 cut(s)	81, 338, 407, 509, 557
Tru9I	TTAA	5 cut(s)	81, 338, 407, 509, 557
TscAI	CASTG	3 cut(s)	51, 171, 328
TseFI	GTSAC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	495
TspRI	CASTG	3 cut(s)	51, 171, 328
VpaK11BI	GGWCC	1 cut(s)	183
VspI	ATTAAT	1 cut(s)	557
XbaI	TCTAGA	1 cut(s)	440
XspI	CTAG	4 cut(s)	180, 330, 411, 441
ZraI	GACGTC	3 cut(s)	190, 263, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.