Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001940

Physical Location & Seq

Genomic Coordinates Reverse (-)

68303580 .. 68315517

Gene Structure 11938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG423000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGGGATTGCTTTATGTTGTATAGGATTGTATGTAATGGATTTCTCCTGTAAATTGTTCAAAACACCGCAGTCTCGCACAGTCGGACTCGGACTCTTCGACTCTTCGAGTCTTCGCGGCCTCGCGCCCTCGCCTGTCGCCTCAATCTTCCCCAGTTCCCCCAAAGTCCCCAGTTTACCCGATCTCAAAGGCGATCTGAACAGAAGTACAGAACCCAGCCGCATCTTCAGGGCTCCGGTCGCTTCCGCCATGTCCGCCAACAGAACCCACGGGCTTAAATCCGGACCGGCTTTCTCCTTCACAAAGCCGATCTGCCCAGGCGCTTCTCCTCCGGCCGCTTCCGCCATCTCCGCCATCTCCAAGACCTCTCTCTCTCGGCGCTTACTCGATCTGGGCAGGACTGGAGTCTTCCACCCGATCTCCGATTCTCACCGATCCGCCTCTTCTGAGCTCTTCACCCAGGGATCCTTCGACAGATTATGCTGGTCCCAACTCCCTGTTTTGGTTGTAGAATGGCCACTGATGGGAATGCTGTTGTACCATCGCCGAAAGCTCCAGCTGAACCAAACCCGGGAGCTCTTGAGGCTCCTCCTACGGCTCCAACATCTGCTTGTCCTCCTAGACCATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

22.95

Weight (kDa)

10.19

Isoelectric Point (pI)

60.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001940)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0054121 RchiOBHm_Chr5g0075631 RchiOBHm_Chr7g0218761
rosa_laevigata	RLG00000019954
rosa_multiflora	Rmu_co8337375.1_g000001 Rmu_sc0002724.1_g000041 Rmu_sc0003010.1_g000001 Rmu_ssc0000055.1_g000007
rosa_roxburghii	Rroxscaffold_2G00134930 Rroxscaffold_3G00245470
rosa_rugosa	Rorug02G0540100 Rorug04G0078000 Rorug07G0291900
rosa_samantha	Rh1AG017000 Rh1BG425200 Rh1CG073600 Rh1CG400600 Rh1DG047900 Rh1DG080500 Rh1DG458000 Rh2AG189900 Rh2DG158300 Rh2DG556600 Rh3AG195400 Rh3AG237500 Rh3BG189900 Rh3BG225600 Rh3BG288600 Rh3CG179800 Rh3CG220400 Rh3CG270300 Rh3DG221000 Rh4AG241700 Rh5AG065800 Rh5AG087600 Rh5AG472000 Rh5AG542700 Rh5BG423000 Rh5CG282600 Rh5DG082100 Rh6AG078100 Rh6BG094300 Rh6CG332600 Rh6DG209500 Rh7AG037100 Rh7DG465800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	117, 125
AccIII	TCCGGA	1 cut(s)	281
AciI	CCGC	9 cut(s)	68, 117, 220, 246, 255, 336, 342, 351, 438
AclWI	GGATC	3 cut(s)	429, 459, 472
AcoI	YGGCCR	2 cut(s)	333, 515
AcuI	CTGAAG	1 cut(s)	211
AfaI	GTAC	2 cut(s)	208, 539
AfiI	CCNNNNNNNGG	3 cut(s)	502, 524, 571
AgsI	TTSAA	1 cut(s)	61
AjnI	CCWGG	2 cut(s)	316, 459
AluBI	AGCT	4 cut(s)	451, 553, 559, 577
AluI	AGCT	4 cut(s)	451, 553, 559, 577
Alw21I	GWGCWC	2 cut(s)	453, 579
Alw26I	GTCTC	1 cut(s)	78
AlwI	GGATC	3 cut(s)	429, 459, 472
Ama87I	CYCGRG	1 cut(s)	570
Aor13HI	TCCGGA	1 cut(s)	281
AoxI	GGCC	3 cut(s)	118, 333, 515
AspLEI	GCGC	3 cut(s)	127, 323, 381
AspS9I	GGNCC	2 cut(s)	284, 486
AsuC2I	CCSGG	2 cut(s)	571, 572
AsuHPI	GGTGA	2 cut(s)	422, 448
AvaI	CYCGRG	1 cut(s)	570
AvaII	GGWCC	2 cut(s)	284, 486
BalI	TGGCCA	1 cut(s)	517
BamHI	GGATCC	1 cut(s)	464
BanII	GRGCYC	3 cut(s)	235, 453, 579
BbsI	GAAGAC	2 cut(s)	104, 400
Bbv12I	GWGCWC	2 cut(s)	453, 579
BccI	CCATC	4 cut(s)	353, 362, 517, 549
BceAI	ACGGC	1 cut(s)	611
BciT130I	CCWGG	2 cut(s)	318, 461
BcnI	CCSGG	2 cut(s)	571, 572
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	1 cut(s)	620
BfoI	RGCGCY	2 cut(s)	324, 382
BisI	GCNGC	3 cut(s)	118, 220, 336
BlsI	GCNGC	3 cut(s)	119, 221, 337
Bme1390I	CCNGG	4 cut(s)	318, 461, 571, 572
Bme18I	GGWCC	2 cut(s)	284, 486
BmeT110I	CYCGRG	1 cut(s)	570
BmgT120I	GGNCC	2 cut(s)	284, 486
BmiI	GGNNCC	5 cut(s)	234, 466, 488, 587, 599
BmrFI	CCNGG	4 cut(s)	318, 461, 571, 572
BmrI	ACTGGG	2 cut(s)	147, 165
BmsI	GCATC	1 cut(s)	231
BmuI	ACTGGG	2 cut(s)	147, 165
BoxI	GACNNNNGTC	1 cut(s)	404
BpiI	GAAGAC	2 cut(s)	104, 400
BpmI	CTGGAG	2 cut(s)	423, 539
BpuEI	CTTGAG	1 cut(s)	601
BpuMI	CCSGG	2 cut(s)	571, 572
BsaJI	CCNNGG	5 cut(s)	268, 316, 459, 460, 570
BsaWI	WCCGGW	2 cut(s)	235, 281
BsaXI	ACNNNNNCTCC	2 cut(s)	404, 434
Bsc4I	CCNNNNNNNGG	3 cut(s)	502, 524, 571
Bse118I	RCCGGY	1 cut(s)	286
Bse1I	ACTGG	3 cut(s)	153, 171, 406
BseAI	TCCGGA	1 cut(s)	281
BseBI	CCWGG	2 cut(s)	318, 461
BseDI	CCNNGG	5 cut(s)	268, 316, 459, 460, 570
BseLI	CCNNNNNNNGG	3 cut(s)	502, 524, 571
BseMII	CTCAG	1 cut(s)	438
BseNI	ACTGG	3 cut(s)	153, 171, 406
BseRI	GAGGAG	2 cut(s)	318, 578
BseX3I	CGGCCG	1 cut(s)	333
BseYI	CCCAGC	1 cut(s)	215
Bsh1236I	CGCG	2 cut(s)	117, 125
Bsh1285I	CGRYCG	2 cut(s)	240, 336
BshFI	GGCC	3 cut(s)	120, 335, 517
BsiEI	CGRYCG	2 cut(s)	240, 336
BsiHKAI	GWGCWC	2 cut(s)	453, 579
BsiHKCI	CYCGRG	1 cut(s)	570
BsiSI	CCGG	5 cut(s)	236, 282, 287, 332, 571
BslFI	GGGAC	2 cut(s)	152, 472
BslI	CCNNNNNNNGG	3 cut(s)	502, 524, 571
BsmAI	GTCTC	1 cut(s)	78
BsmFI	GGGAC	2 cut(s)	152, 472
BsmI	GAATGC	1 cut(s)	534
BsnI	GGCC	3 cut(s)	120, 335, 517
BsoBI	CYCGRG	1 cut(s)	570
Bsp1286I	GDGCHC	3 cut(s)	235, 453, 579
Bsp13I	TCCGGA	1 cut(s)	281
Bsp143I	GATC	7 cut(s)	181, 193, 309, 388, 417, 434, 464
BspACI	CCGC	9 cut(s)	68, 117, 220, 246, 255, 336, 342, 351, 438
BspANI	GGCC	3 cut(s)	120, 335, 517
BspCNI	CTCAG	1 cut(s)	439
BspEI	TCCGGA	1 cut(s)	281
BspFNI	CGCG	2 cut(s)	117, 125
BspLI	GGNNCC	5 cut(s)	234, 466, 488, 587, 599
BspPI	GGATC	3 cut(s)	429, 459, 472
BspQI	GCTCTTC	1 cut(s)	458
BsrFI	RCCGGY	1 cut(s)	286
BsrI	ACTGG	3 cut(s)	153, 171, 406
BssAI	RCCGGY	1 cut(s)	286
BssECI	CCNNGG	5 cut(s)	268, 316, 459, 460, 570
BssMI	GATC	7 cut(s)	181, 193, 309, 388, 417, 434, 464
Bst2UI	CCWGG	2 cut(s)	318, 461
Bst4CI	ACNGT	1 cut(s)	82
Bst6I	CTCTTC	4 cut(s)	101, 109, 448, 458
BstDEI	CTNAG	1 cut(s)	447
BstDSI	CCRYGG	1 cut(s)	268
BstFNI	CGCG	2 cut(s)	117, 125
BstH2I	RGCGCY	2 cut(s)	324, 382
BstHHI	GCGC	3 cut(s)	127, 323, 381
BstKTI	GATC	7 cut(s)	184, 196, 312, 391, 420, 437, 467
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	7 cut(s)	181, 193, 309, 388, 417, 434, 464
BstMCI	CGRYCG	2 cut(s)	240, 336
BstMWI	GCNNNNNNNGC	5 cut(s)	239, 254, 341, 350, 583
BstNI	CCWGG	2 cut(s)	318, 461
BstPAI	GACNNNNGTC	1 cut(s)	404
BstSCI	CCNGG	4 cut(s)	316, 459, 569, 570
BstUI	CGCG	2 cut(s)	117, 125
BstV2I	GAAGAC	2 cut(s)	104, 400
BstX2I	RGATCY	1 cut(s)	464
BstYI	RGATCY	1 cut(s)	464
BstZI	CGGCCG	1 cut(s)	333
BsuRI	GGCC	3 cut(s)	120, 335, 517
BtgI	CCRYGG	1 cut(s)	268
BtgZI	GCGATG	1 cut(s)	527
BtsIMutI	CAGTG	1 cut(s)	518
CfoI	GCGC	3 cut(s)	127, 323, 381
Cfr10I	RCCGGY	1 cut(s)	286
Cfr13I	GGNCC	2 cut(s)	284, 486
Cfr9I	CCCGGG	1 cut(s)	570
CpoI	CGGWCCG	1 cut(s)	284
Csp6I	GTAC	2 cut(s)	207, 538
CspI	CGGWCCG	1 cut(s)	284
CviAII	CATG	1 cut(s)	250
CviQI	GTAC	2 cut(s)	207, 538
DdeI	CTNAG	1 cut(s)	447
DpnI	GATC	7 cut(s)	183, 195, 311, 390, 419, 436, 466
DpnII	GATC	7 cut(s)	181, 193, 309, 388, 417, 434, 464
EaeI	YGGCCR	2 cut(s)	333, 515
EagI	CGGCCG	1 cut(s)	333
Eam1104I	CTCTTC	4 cut(s)	101, 109, 448, 458
EarI	CTCTTC	4 cut(s)	101, 109, 448, 458
EciI	GGCGGA	5 cut(s)	235, 244, 331, 340, 427
Ecl136II	GAGCTC	2 cut(s)	451, 577
EclXI	CGGCCG	1 cut(s)	333
Eco24I	GRGCYC	3 cut(s)	235, 453, 579
Eco47I	GGWCC	2 cut(s)	284, 486
Eco52I	CGGCCG	1 cut(s)	333
Eco53kI	GAGCTC	2 cut(s)	451, 577
Eco57I	CTGAAG	1 cut(s)	211
Eco88I	CYCGRG	1 cut(s)	570
EcoICRI	GAGCTC	2 cut(s)	451, 577
EcoRII	CCWGG	2 cut(s)	316, 459
EcoT38I	GRGCYC	3 cut(s)	235, 453, 579
FaeI	CATG	1 cut(s)	253
FaiI	YATR	5 cut(s)	16, 23, 33, 251, 481
FaqI	GGGAC	2 cut(s)	152, 472
FatI	CATG	1 cut(s)	249
Fnu4HI	GCNGC	3 cut(s)	118, 220, 336
FriOI	GRGCYC	3 cut(s)	235, 453, 579
Fsp4HI	GCNGC	3 cut(s)	118, 220, 336
FspBI	CTAG	1 cut(s)	620
GlaI	GCGC	3 cut(s)	126, 322, 380
GluI	GCNGC	3 cut(s)	118, 220, 336
GsaI	CCCAGC	1 cut(s)	219
GsuI	CTGGAG	2 cut(s)	423, 539
HaeII	RGCGCY	2 cut(s)	324, 382
HaeIII	GGCC	3 cut(s)	120, 335, 517
HapII	CCGG	5 cut(s)	236, 282, 287, 332, 571
HhaI	GCGC	3 cut(s)	127, 323, 381
Hin1II	CATG	1 cut(s)	253
Hin6I	GCGC	3 cut(s)	125, 321, 379
HinP1I	GCGC	3 cut(s)	125, 321, 379
HinfI	GANTC	6 cut(s)	87, 93, 101, 109, 405, 425
HpaII	CCGG	5 cut(s)	236, 282, 287, 332, 571
HphI	GGTGA	2 cut(s)	422, 448
Hpy166II	GTNNAC	1 cut(s)	176
Hpy188I	TCNGA	5 cut(s)	86, 92, 198, 424, 448
Hpy188III	TCNNGA	2 cut(s)	282, 580
Hpy8I	GTNNAC	1 cut(s)	176
HpyAV	CCTTC	2 cut(s)	307, 478
HpyCH4III	ACNGT	1 cut(s)	82
HpyF10VI	GCNNNNNNNGC	5 cut(s)	239, 254, 341, 350, 583
HpyF3I	CTNAG	1 cut(s)	447
Hsp92II	CATG	1 cut(s)	253
HspAI	GCGC	3 cut(s)	125, 321, 379
Kpn2I	TCCGGA	1 cut(s)	281
Kzo9I	GATC	7 cut(s)	181, 193, 309, 388, 417, 434, 464
LguI	GCTCTTC	1 cut(s)	458
LmnI	GCTCC	5 cut(s)	238, 558, 574, 591, 603
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	1 cut(s)	620
MalI	GATC	7 cut(s)	183, 195, 311, 390, 419, 436, 466
MboI	GATC	7 cut(s)	181, 193, 309, 388, 417, 434, 464
MboII	GAAGA	8 cut(s)	88, 96, 104, 139, 217, 400, 435, 445
MflI	RGATCY	1 cut(s)	464
MhlI	GDGCHC	3 cut(s)	235, 453, 579
MlsI	TGGCCA	1 cut(s)	517
MluCI	AATT	1 cut(s)	53
MluNI	TGGCCA	1 cut(s)	517
MlyI	GAGTC	5 cut(s)	81, 87, 95, 118, 414
MmeI	TCCRAC	2 cut(s)	64, 625
MnlI	CCTC	9 cut(s)	131, 139, 151, 339, 376, 451, 576, 599, 626
Mox20I	TGGCCA	1 cut(s)	517
MroI	TCCGGA	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	517
MseI	TTAA	1 cut(s)	276
Msp20I	TGGCCA	1 cut(s)	517
MspA1I	CMGCKG	1 cut(s)	559
MspI	CCGG	5 cut(s)	236, 282, 287, 332, 571
MspR9I	CCNGG	4 cut(s)	318, 461, 571, 572
Mva1269I	GAATGC	1 cut(s)	534
MvaI	CCWGG	2 cut(s)	318, 461
MvnI	CGCG	2 cut(s)	117, 125
MwoI	GCNNNNNNNGC	5 cut(s)	239, 254, 341, 350, 583
NciI	CCSGG	2 cut(s)	571, 572
NdeII	GATC	7 cut(s)	181, 193, 309, 388, 417, 434, 464
NlaIII	CATG	1 cut(s)	253
NlaIV	GGNNCC	5 cut(s)	234, 466, 488, 587, 599
NmeAIII	GCCGAG	1 cut(s)	355
PasI	CCCWGGG	1 cut(s)	460
PciSI	GCTCTTC	1 cut(s)	458
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PctI	GAATGC	1 cut(s)	534
PfeI	GAWTC	1 cut(s)	425
PkrI	GCNGC	3 cut(s)	119, 221, 337
PleI	GAGTC	5 cut(s)	81, 87, 95, 117, 413
PpsI	GAGTC	5 cut(s)	81, 87, 95, 117, 413
PshAI	GACNNNNGTC	1 cut(s)	404
Psp124BI	GAGCTC	2 cut(s)	453, 579
Psp6I	CCWGG	2 cut(s)	316, 459
PspFI	CCCAGC	1 cut(s)	215
PspGI	CCWGG	2 cut(s)	316, 459
PspN4I	GGNNCC	5 cut(s)	234, 466, 488, 587, 599
PspPI	GGNCC	2 cut(s)	284, 486
PsuI	RGATCY	1 cut(s)	464
PvuII	CAGCTG	1 cut(s)	559
RsaI	GTAC	2 cut(s)	208, 539
RsaNI	GTAC	2 cut(s)	207, 538
Rsr2I	CGGWCCG	1 cut(s)	284
RsrII	CGGWCCG	1 cut(s)	284
SacI	GAGCTC	2 cut(s)	453, 579
SapI	GCTCTTC	1 cut(s)	458
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	3 cut(s)	118, 220, 336
Sau3AI	GATC	7 cut(s)	181, 193, 309, 388, 417, 434, 464
Sau96I	GGNCC	2 cut(s)	284, 486
SchI	GAGTC	5 cut(s)	81, 87, 95, 118, 414
ScrFI	CCNGG	4 cut(s)	318, 461, 571, 572
SduI	GDGCHC	3 cut(s)	235, 453, 579
SetI	ASST	5 cut(s)	368, 453, 555, 561, 579
SfaNI	GCATC	1 cut(s)	231
SinI	GGWCC	2 cut(s)	284, 486
SmaI	CCCGGG	1 cut(s)	572
SmlI	CTYRAG	1 cut(s)	580
SmoI	CTYRAG	1 cut(s)	580
Sse9I	AATT	1 cut(s)	53
SsiI	CCGC	9 cut(s)	68, 117, 220, 246, 255, 336, 342, 351, 438
SspMI	CTAG	1 cut(s)	620
SstI	GAGCTC	2 cut(s)	453, 579
StyD4I	CCNGG	4 cut(s)	316, 459, 569, 570
TaaI	ACNGT	1 cut(s)	82
TaqI	TCGA	4 cut(s)	99, 107, 387, 471
TasI	AATT	1 cut(s)	53
TatI	WGTACW	1 cut(s)	206
TauI	GCSGC	3 cut(s)	120, 222, 338
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	1 cut(s)	525
TspMI	CCCGGG	1 cut(s)	570
TspRI	CASTG	1 cut(s)	525
VpaK11BI	GGWCC	2 cut(s)	284, 486
XmaI	CCCGGG	1 cut(s)	570
XspI	CTAG	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.