Rh3DG221000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001940
Physical Location & Seq
Forward (+)
20696878 .. 20712544
15667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG221000.1

Sequence Viewer

Length: 342 bp
ATGTTCATGGCTACTGATGGGAATGATATTGTACCATCGCCGACAGCTCCAGTGGAACCAAACCCTGCAACACCTGATGCTCCGGTTAAGCCTACAGCTTCGACATCTGGTCGTCCTCCAAGACCAACAAAATCCAAGAGGAAGAGGGCTGAGAAGAAGGCAGTCAAGACACTGAATCATGCGAAGGAGAAATCCGGTGAACAAGCAGCAAAAAGGGCTGCTTGTAAGGCAAAAAAATCGAACCTGGCTGAGAATTCAGATGCTTTGACTGGGGTAAACTCTTCACAGTTCACAGAACAAAACCATGGAAAAGGAACCCTAAAGGAAGCTTTCAATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.0

Weight (kDa)

10.0

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 253
AfaI GTAC 1 cut(s) 33
AgsI TTSAA 1 cut(s) 334
AhdI GACNNNNNGTC 1 cut(s) 108
AjnI CCWGG 1 cut(s) 243
AluBI AGCT 3 cut(s) 47, 98, 329
AluI AGCT 3 cut(s) 47, 98, 329
ApeKI GCWGC 2 cut(s) 206, 218
ApoI RAATTY 1 cut(s) 253
AsuHPI GGTGA 1 cut(s) 209
BbvI GCAGC 2 cut(s) 205, 218
BccI CCATC 2 cut(s) 11, 43
BcgI CGANNNNNNTGC 2 cut(s) 219, 253
BciT130I CCWGG 1 cut(s) 245
BfmI CTRYAG 1 cut(s) 93
BisI GCNGC 2 cut(s) 207, 219
BlsI GCNGC 2 cut(s) 208, 220
Bme1390I CCNGG 1 cut(s) 245
BmeRI GACNNNNNGTC 1 cut(s) 108
BmiI GGNNCC 2 cut(s) 57, 316
BmrFI CCNGG 1 cut(s) 245
BmrI ACTGGG 1 cut(s) 279
BmsI GCATC 2 cut(s) 67, 250
BmuI ACTGGG 1 cut(s) 279
BpmI CTGGAG 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 304
BsaWI WCCGGW 2 cut(s) 82, 194
Bse1I ACTGG 2 cut(s) 50, 274
BseBI CCWGG 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 304
BseMII CTCAG 2 cut(s) 141, 240
BseNI ACTGG 2 cut(s) 50, 274
BseXI GCAGC 2 cut(s) 205, 218
BsiSI CCGG 2 cut(s) 83, 195
Bsp19I CCATGG 1 cut(s) 304
BspCNI CTCAG 2 cut(s) 142, 241
BspLI GGNNCC 2 cut(s) 57, 316
BsrI ACTGG 2 cut(s) 50, 274
BssECI CCNNGG 1 cut(s) 304
BssT1I CCWWGG 1 cut(s) 304
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 1 cut(s) 288
Bst6I CTCTTC 2 cut(s) 137, 286
BstDEI CTNAG 2 cut(s) 150, 249
BstDSI CCRYGG 1 cut(s) 304
BstMWI GCNNNNNNNGC 2 cut(s) 215, 227
BstNI CCWGG 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 243
BstSFI CTRYAG 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 205, 218
BtgI CCRYGG 1 cut(s) 304
BtgZI GCGATG 1 cut(s) 21
BtsIMutI CAGTG 2 cut(s) 57, 170
Csp6I GTAC 1 cut(s) 32
CviAII CATG 3 cut(s) 7, 179, 305
CviJI RGCY 8 cut(s) 11, 47, 91, 98, 149, 218, 248, 329
CviKI_1 RGCY 8 cut(s) 11, 47, 91, 98, 149, 218, 248, 329
CviQI GTAC 1 cut(s) 32
DdeI CTNAG 2 cut(s) 150, 249
DriI GACNNNNNGTC 1 cut(s) 108
Eam1104I CTCTTC 2 cut(s) 137, 286
Eam1105I GACNNNNNGTC 1 cut(s) 108
EarI CTCTTC 2 cut(s) 137, 286
Eco130I CCWWGG 1 cut(s) 304
EcoRI GAATTC 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 243
EcoT14I CCWWGG 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 304
FaeI CATG 3 cut(s) 10, 182, 308
FaiI YATR 3 cut(s) 8, 180, 306
FalI AAGNNNNNCTT 2 cut(s) 205, 237
FatI CATG 3 cut(s) 6, 178, 304
Fnu4HI GCNGC 2 cut(s) 207, 219
Fsp4HI GCNGC 2 cut(s) 207, 219
GluI GCNGC 2 cut(s) 207, 219
GsuI CTGGAG 1 cut(s) 33
HapII CCGG 2 cut(s) 83, 195
Hin1II CATG 3 cut(s) 10, 182, 308
HindIII AAGCTT 1 cut(s) 327
HinfI GANTC 1 cut(s) 175
HpaII CCGG 2 cut(s) 83, 195
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 3 cut(s) 200, 277, 291
Hpy188I TCNGA 1 cut(s) 259
Hpy188III TCNNGA 1 cut(s) 166
Hpy8I GTNNAC 3 cut(s) 200, 277, 291
HpyAV CCTTC 2 cut(s) 151, 178
HpyCH4III ACNGT 1 cut(s) 288
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 227
HpyF3I CTNAG 2 cut(s) 150, 249
Hsp92II CATG 3 cut(s) 10, 182, 308
LmnI GCTCC 2 cut(s) 52, 85
LpnPI CCDG 9 cut(s) 63, 78, 87, 93, 96, 208, 230, 255, 257
Lsp1109I GCAGC 2 cut(s) 205, 218
LweI GCATC 2 cut(s) 67, 250
MboII GAAGA 3 cut(s) 154, 166, 273
MluCI AATT 1 cut(s) 253
MnlI CCTC 3 cut(s) 126, 132, 138
MseI TTAA 1 cut(s) 87
MspI CCGG 2 cut(s) 83, 195
MspR9I CCNGG 1 cut(s) 245
MvaI CCWGG 1 cut(s) 245
MwoI GCNNNNNNNGC 2 cut(s) 215, 227
NcoI CCATGG 1 cut(s) 304
NlaIII CATG 3 cut(s) 10, 182, 308
NlaIV GGNNCC 2 cut(s) 57, 316
PfeI GAWTC 1 cut(s) 175
PkrI GCNGC 2 cut(s) 208, 220
Psp6I CCWGG 1 cut(s) 243
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 2 cut(s) 57, 316
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 2 cut(s) 207, 219
ScrFI CCNGG 1 cut(s) 245
SetI ASST 5 cut(s) 49, 76, 100, 246, 331
SfaNI GCATC 2 cut(s) 67, 250
SfcI CTRYAG 1 cut(s) 93
Sse9I AATT 1 cut(s) 253
StyD4I CCNGG 1 cut(s) 243
StyI CCWWGG 1 cut(s) 304
TaaI ACNGT 1 cut(s) 288
TaqI TCGA 2 cut(s) 101, 239
TasI AATT 1 cut(s) 253
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TscAI CASTG 2 cut(s) 57, 177
TseI GCWGC 2 cut(s) 206, 218
TspRI CASTG 2 cut(s) 57, 177
XapI RAATTY 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.