Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001940

Physical Location & Seq

Genomic Coordinates Reverse (-)

11318462 .. 11319130

Gene Structure 669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG078100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCTGTACTATGTGATTATAGCATGGCTACTAATGGGAAGGCTAGTGTGCCATTGTTGACAGCTCCAATAGAACCAGACCCAGTAGCTACGATTACACGTATAGCTCTGGCATCTGCTCGTCCTCCCAGACCAGTCAAAAGTAAGAGGAAGAGGACTGTGAAGAAGCTAGTCAAGTCCCTGAAGGTCAGTATGCAATCCATCGTATGGGTATACTTCGAGAAGTTAGATAGGCCTATGGTGGAATTGCTGGATGGAAAGAAGCAGGAAGTTGGACGTGAAGTAAGAGCAAAGTGCAGATGTTGTGAAACTGACCTTGCTAGAGATTCTTATTTTAGTGGTACTAGCACATTAGGAAGGCACATTGAGACTGTATGCAAAAAAATACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009893 GO:0010310 GO:0010726 GO:0010941 GO:0010942 GO:0016020 GO:0019222 GO:0031323 GO:0031325 GO:0043207 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051194 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0098542 GO:2000377 GO:2000379

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

130

Amino Acids

14.51

Weight (kDa)

9.8

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-BED	PF02892	69 - 127	5.7e-06	BED zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001940)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0054121 RchiOBHm_Chr5g0075631 RchiOBHm_Chr7g0218761
rosa_laevigata	RLG00000019954
rosa_multiflora	Rmu_co8337375.1_g000001 Rmu_sc0002724.1_g000041 Rmu_sc0003010.1_g000001 Rmu_ssc0000055.1_g000007
rosa_roxburghii	Rroxscaffold_2G00134930 Rroxscaffold_3G00245470
rosa_rugosa	Rorug02G0540100 Rorug04G0078000 Rorug07G0291900
rosa_samantha	Rh1AG017000 Rh1BG425200 Rh1CG073600 Rh1CG400600 Rh1DG047900 Rh1DG080500 Rh1DG458000 Rh2AG189900 Rh2DG158300 Rh2DG556600 Rh3AG195400 Rh3AG237500 Rh3BG189900 Rh3BG225600 Rh3BG288600 Rh3CG179800 Rh3CG220400 Rh3CG270300 Rh3DG221000 Rh4AG241700 Rh5AG065800 Rh5AG087600 Rh5AG472000 Rh5AG542700 Rh5BG423000 Rh5CG282600 Rh5DG082100 Rh6AG078100 Rh6BG094300 Rh6CG332600 Rh6DG209500 Rh7AG037100 Rh7DG465800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	207
AccI	GTMKAC	1 cut(s)	213
AcuI	CTGAAG	1 cut(s)	203
AfaI	GTAC	2 cut(s)	9, 343
AfiI	CCNNNNNNNGG	1 cut(s)	207
AflIII	ACRYGT	1 cut(s)	98
AjiI	CACGTC	1 cut(s)	278
AluBI	AGCT	4 cut(s)	65, 89, 107, 169
AluI	AGCT	4 cut(s)	65, 89, 107, 169
Alw26I	GTCTC	1 cut(s)	362
AoxI	GGCC	1 cut(s)	233
BccI	CCATC	2 cut(s)	209, 248
BcoDI	GTCTC	1 cut(s)	362
BfaI	CTAG	5 cut(s)	45, 170, 321, 345, 391
BmgBI	CACGTC	1 cut(s)	278
BmrI	ACTGGG	1 cut(s)	77
BmsI	GCATC	1 cut(s)	122
BmuI	ACTGGG	1 cut(s)	77
BsaAI	YACGTR	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse1I	ACTGG	2 cut(s)	83, 134
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseNI	ACTGG	2 cut(s)	83, 134
BsgI	GTGCAG	1 cut(s)	316
BshFI	GGCC	1 cut(s)	235
BslFI	GGGAC	1 cut(s)	163
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmAI	GTCTC	1 cut(s)	362
BsmFI	GGGAC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	235
BspANI	GGCC	1 cut(s)	235
BsrI	ACTGG	2 cut(s)	83, 134
BssNAI	GTATAC	1 cut(s)	214
Bst1107I	GTATAC	1 cut(s)	214
Bst4CI	ACNGT	2 cut(s)	160, 373
Bst6I	CTCTTC	1 cut(s)	146
BstBAI	YACGTR	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	362
BstZ17I	GTATAC	1 cut(s)	214
BsuRI	GGCC	1 cut(s)	235
BtrI	CACGTC	1 cut(s)	278
BtsCI	GGATG	1 cut(s)	259
Csp6I	GTAC	2 cut(s)	8, 342
CviAII	CATG	1 cut(s)	25
CviJI	RGCY	8 cut(s)	5, 29, 44, 65, 89, 107, 169, 235
CviKI_1	RGCY	8 cut(s)	5, 29, 44, 65, 89, 107, 169, 235
CviQI	GTAC	2 cut(s)	8, 342
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco147I	AGGCCT	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	203
FaeI	CATG	1 cut(s)	28
FaiI	YATR	9 cut(s)	13, 21, 26, 104, 194, 208, 214, 239, 376
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	1 cut(s)	24
FblI	GTMKAC	1 cut(s)	213
FokI	GGATG	1 cut(s)	266
FspBI	CTAG	5 cut(s)	45, 170, 321, 345, 391
HaeIII	GGCC	1 cut(s)	235
Hin1II	CATG	1 cut(s)	28
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HinfI	GANTC	1 cut(s)	326
Hpy166II	GTNNAC	2 cut(s)	60, 214
Hpy188III	TCNNGA	1 cut(s)	220
Hpy8I	GTNNAC	2 cut(s)	60, 214
HpyAV	CCTTC	3 cut(s)	34, 178, 351
HpyCH4III	ACNGT	2 cut(s)	160, 373
HpyCH4IV	ACGT	2 cut(s)	100, 277
HpyCH4V	TGCA	3 cut(s)	196, 297, 378
HpySE526I	ACGT	2 cut(s)	100, 277
Hsp92II	CATG	1 cut(s)	28
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	8 cut(s)	90, 95, 96, 142, 147, 194, 236, 251
LweI	GCATC	1 cut(s)	122
MaeI	CTAG	5 cut(s)	45, 170, 321, 345, 391
MaeII	ACGT	2 cut(s)	100, 277
MboII	GAAGA	2 cut(s)	163, 175
MluCI	AATT	1 cut(s)	245
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	3 cut(s)	135, 141, 147
NlaIII	CATG	1 cut(s)	28
PceI	AGGCCT	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	326
PflMI	CCANNNNNTGG	1 cut(s)	207
Ppu21I	YACGTR	1 cut(s)	101
RsaI	GTAC	2 cut(s)	9, 343
RsaNI	GTAC	2 cut(s)	8, 342
SetI	ASST	8 cut(s)	67, 91, 103, 109, 171, 189, 280, 318
SfaNI	GCATC	1 cut(s)	122
Sse9I	AATT	1 cut(s)	245
SseBI	AGGCCT	1 cut(s)	235
SspMI	CTAG	5 cut(s)	45, 170, 321, 345, 391
StuI	AGGCCT	1 cut(s)	235
TaaI	ACNGT	2 cut(s)	160, 373
TaiI	ACGT	2 cut(s)	103, 280
TaqI	TCGA	1 cut(s)	219
TasI	AATT	1 cut(s)	245
TatI	WGTACW	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	326
Van91I	CCANNNNNTGG	1 cut(s)	207
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	5 cut(s)	45, 170, 321, 345, 391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.