Rh1CG400600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001940
Physical Location & Seq
Reverse (-)
66700265 .. 66702665
2401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG400600.1

Sequence Viewer

Length: 291 bp
ATGGAGGAAAAGGGTAAAGTGACTAGTGAGATTAAAGCTCCCGCGTTTTCCCATCTCCAATGGCTCCAAAATCAGTCAAAAGAGCACTGTGTGCTTCCGGCAATTAATGGCGGAATCGACACACCGAGCGAGACGCTGCCCAGGACTGCTCTTTCTCTCTTCACTTCACCTCACGGCGCCTGCTTCTTTCTCCCTCACATATCGAGATGGCATAATCCACATCATAAGCCAACTCGAAGCCAGAGAATAGGAGCCCGTTGTTCTTCAGGGAAAACCGTGGAAGCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.64

Weight (kDa)

9.3

Isoelectric Point (pI)

68.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 176
AccII CGCG 1 cut(s) 44
AciI CCGC 2 cut(s) 42, 111
AcuI CTGAAG 1 cut(s) 249
AcyI GRCGYC 1 cut(s) 177
AdeI CACNNNGTG 1 cut(s) 91
AhlI ACTAGT 1 cut(s) 23
AjnI CCWGG 1 cut(s) 140
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
Alw21I GWGCWC 1 cut(s) 87
Alw26I GTCTC 1 cut(s) 125
ApeKI GCWGC 1 cut(s) 136
AseI ATTAAT 1 cut(s) 105
AspLEI GCGC 1 cut(s) 179
AsuHPI GGTGA 1 cut(s) 159
BanI GGYRCC 1 cut(s) 176
BanII GRGCYC 1 cut(s) 256
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 123
BccI CCATC 2 cut(s) 60, 201
BceAI ACGGC 1 cut(s) 190
BciT130I CCWGG 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 125
BcuI ACTAGT 1 cut(s) 23
BfaI CTAG 1 cut(s) 24
BfoI RGCGCY 1 cut(s) 180
BisI GCNGC 1 cut(s) 137
BlsI GCNGC 1 cut(s) 138
Bme1390I CCNGG 1 cut(s) 142
BmiI GGNNCC 3 cut(s) 65, 178, 253
BmrFI CCNGG 1 cut(s) 142
BsaHI GRCGYC 1 cut(s) 177
BsaJI CCNNGG 2 cut(s) 140, 276
BseBI CCWGG 1 cut(s) 142
BseDI CCNNGG 2 cut(s) 140, 276
BseXI GCAGC 1 cut(s) 123
Bsh1236I CGCG 1 cut(s) 44
BshNI GGYRCC 1 cut(s) 176
BsiHKAI GWGCWC 1 cut(s) 87
BsiSI CCGG 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 125
BsmBI CGTCTC 1 cut(s) 125
Bsp1286I GDGCHC 2 cut(s) 87, 256
BspACI CCGC 2 cut(s) 42, 111
BspFNI CGCG 1 cut(s) 44
BspLI GGNNCC 3 cut(s) 65, 178, 253
BspT107I GGYRCC 1 cut(s) 176
BssECI CCNNGG 2 cut(s) 140, 276
BssNI GRCGYC 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 142
Bst4CI ACNGT 2 cut(s) 89, 277
Bst6I CTCTTC 1 cut(s) 164
BstACI GRCGYC 1 cut(s) 177
BstAPI GCANNNNNTGC 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 181
BstDSI CCRYGG 1 cut(s) 276
BstFNI CGCG 1 cut(s) 44
BstH2I RGCGCY 1 cut(s) 180
BstHHI GCGC 1 cut(s) 179
BstMAI GTCTC 1 cut(s) 125
BstMWI GCNNNNNNNGC 1 cut(s) 91
BstNI CCWGG 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 140
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 123
BtgI CCRYGG 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 85
Cac8I GCNNGC 1 cut(s) 181
CfoI GCGC 1 cut(s) 179
CseI GACGC 1 cut(s) 142
CviJI RGCY 6 cut(s) 38, 64, 229, 240, 254, 284
CviKI_1 RGCY 6 cut(s) 38, 64, 229, 240, 254, 284
DinI GGCGCC 1 cut(s) 178
DraIII CACNNNGTG 1 cut(s) 91
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
EciI GGCGGA 1 cut(s) 126
Eco24I GRGCYC 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 140
EcoT38I GRGCYC 1 cut(s) 256
EgeI GGCGCC 1 cut(s) 178
EheI GGCGCC 1 cut(s) 178
Esp3I CGTCTC 1 cut(s) 125
FaiI YATR 3 cut(s) 200, 213, 225
FauI CCCGC 1 cut(s) 49
Fnu4HI GCNGC 1 cut(s) 137
FriOI GRGCYC 1 cut(s) 256
Fsp4HI GCNGC 1 cut(s) 137
FspBI CTAG 1 cut(s) 24
GlaI GCGC 1 cut(s) 178
GluI GCNGC 1 cut(s) 137
HaeII RGCGCY 1 cut(s) 180
HapII CCGG 1 cut(s) 98
HgaI GACGC 1 cut(s) 142
HhaI GCGC 1 cut(s) 179
Hin1I GRCGYC 1 cut(s) 177
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
HinfI GANTC 1 cut(s) 114
HpaII CCGG 1 cut(s) 98
HphI GGTGA 1 cut(s) 159
Hpy188III TCNNGA 1 cut(s) 204
HpyCH4III ACNGT 2 cut(s) 89, 277
HpyF10VI GCNNNNNNNGC 1 cut(s) 91
Hsp92I GRCGYC 1 cut(s) 177
HspAI GCGC 1 cut(s) 177
KasI GGCGCC 1 cut(s) 176
LmnI GCTCC 3 cut(s) 43, 69, 251
LpnPI CCDG 6 cut(s) 111, 127, 154, 193, 252, 254
Lsp1109I GCAGC 1 cut(s) 123
MaeI CTAG 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 19
MboII GAAGA 2 cut(s) 151, 255
MfeI CAATTG 1 cut(s) 286
MhlI GDGCHC 2 cut(s) 87, 256
MluCI AATT 2 cut(s) 102, 286
Mly113I GGCGCC 1 cut(s) 177
MnlI CCTC 2 cut(s) 180, 204
MseI TTAA 2 cut(s) 33, 105
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 142
MunI CAATTG 1 cut(s) 286
MvaI CCWGG 1 cut(s) 142
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 1 cut(s) 91
NarI GGCGCC 1 cut(s) 177
NlaIV GGNNCC 3 cut(s) 65, 178, 253
NmuCI GTSAC 1 cut(s) 19
PfeI GAWTC 1 cut(s) 114
PkrI GCNGC 1 cut(s) 138
PluTI GGCGCC 1 cut(s) 180
PshBI ATTAAT 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 140
PspN4I GGNNCC 3 cut(s) 65, 178, 253
SaqAI TTAA 2 cut(s) 33, 105
SatI GCNGC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 142
SduI GDGCHC 2 cut(s) 87, 256
SetI ASST 2 cut(s) 40, 172
SfoI GGCGCC 1 cut(s) 178
SpeI ACTAGT 1 cut(s) 23
Sse9I AATT 2 cut(s) 102, 286
SsiI CCGC 2 cut(s) 42, 111
SspDI GGCGCC 1 cut(s) 176
SspMI CTAG 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 140
TaaI ACNGT 2 cut(s) 89, 277
TaqI TCGA 3 cut(s) 117, 203, 235
TasI AATT 2 cut(s) 102, 286
TfiI GAWTC 1 cut(s) 114
Tru1I TTAA 2 cut(s) 33, 105
Tru9I TTAA 2 cut(s) 33, 105
TscAI CASTG 1 cut(s) 92
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 136
Tsp45I GTSAC 1 cut(s) 19
TspRI CASTG 1 cut(s) 92
VspI ATTAAT 1 cut(s) 105
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.