Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000055.1

Orthogroup ID

OG0001940

Physical Location & Seq

Genomic Coordinates Forward (+)

43869 .. 46618

Gene Structure 2750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000055.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atgaagctaggaggttgggccacaaagctaggtgcgcggaggctgggaggaaaagttaggcgtggtgaggcgaggcggagaagctcgagaggctgggcggcaaagttaggcgcggcgcgacgaggggaggtggcgaagctcggtgtagcgaagctaggcgcggcgaggctgggctgggatgctaggtggggagaggttagggcttggagcatggctactgacgggaatgctattgtaccatcaccgacagctctagcgagagcgcttgatgctccgattaagcctacagctccgacatctgctcctcctccaatagcaccacaaagcaagaggaagagggttgagaagaaggcagtcaagacactgaaggtcacaaccaggtccgacgtctgggcacactttgagaagttttataggccaataatggaaatggtggatggaaagaaccaggaagttggacgtgaagtaagagcaaagtgcaggtattgttctactgaccttgctggggattcttcttttagtggtactagcacattaagaaggcatattgagactgtgtgcaaaaaataccctggtagggctgatatagaagggcaacaatctttaactagagatgggatggcttcccatagtctagtgtctagaacctggacagaagacacatgtactttagctgcctgctgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

228

Amino Acids

24.89

Weight (kDa)

10.45

Isoelectric Point (pI)

55.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001940)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0054121 RchiOBHm_Chr5g0075631 RchiOBHm_Chr7g0218761
rosa_laevigata	RLG00000019954
rosa_multiflora	Rmu_co8337375.1_g000001 Rmu_sc0002724.1_g000041 Rmu_sc0003010.1_g000001 Rmu_ssc0000055.1_g000007
rosa_roxburghii	Rroxscaffold_2G00134930 Rroxscaffold_3G00245470
rosa_rugosa	Rorug02G0540100 Rorug04G0078000 Rorug07G0291900
rosa_samantha	Rh1AG017000 Rh1BG425200 Rh1CG073600 Rh1CG400600 Rh1DG047900 Rh1DG080500 Rh1DG458000 Rh2AG189900 Rh2DG158300 Rh2DG556600 Rh3AG195400 Rh3AG237500 Rh3BG189900 Rh3BG225600 Rh3BG288600 Rh3CG179800 Rh3CG220400 Rh3CG270300 Rh3DG221000 Rh4AG241700 Rh5AG065800 Rh5AG087600 Rh5AG472000 Rh5AG542700 Rh5BG423000 Rh5CG282600 Rh5DG082100 Rh6AG078100 Rh6BG094300 Rh6CG332600 Rh6DG209500 Rh7AG037100 Rh7DG465800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	390
Acc36I	ACCTGC	1 cut(s)	471
AccII	CGCG	4 cut(s)	37, 113, 118, 161
AciI	CCGC	5 cut(s)	37, 76, 98, 113, 161
AcuI	CTGAAG	1 cut(s)	386
AcyI	GRCGYC	1 cut(s)	387
AfaI	GTAC	3 cut(s)	237, 526, 667
AfeI	AGCGCT	1 cut(s)	264
AfiI	CCNNNNNNNGG	3 cut(s)	390, 505, 577
AflIII	ACRYGT	1 cut(s)	662
AjiI	CACGTC	1 cut(s)	461
AjnI	CCWGG	4 cut(s)	377, 447, 571, 647
AluBI	AGCT	8 cut(s)	7, 28, 84, 139, 154, 251, 290, 674
AluI	AGCT	8 cut(s)	7, 28, 84, 139, 154, 251, 290, 674
Alw26I	GTCTC	1 cut(s)	545
Ama87I	CYCGRG	1 cut(s)	85
Aor51HI	AGCGCT	1 cut(s)	264
AoxI	GGCC	2 cut(s)	18, 416
ApeKI	GCWGC	2 cut(s)	674, 681
AspLEI	GCGC	5 cut(s)	37, 113, 118, 161, 265
AspS9I	GGNCC	2 cut(s)	18, 381
AsuHPI	GGTGA	2 cut(s)	77, 234
AvaI	CYCGRG	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	381
BaeGI	GKGCMC	1 cut(s)	397
BbsI	GAAGAC	1 cut(s)	663
BbvI	GCAGC	2 cut(s)	661, 668
BccI	CCATC	4 cut(s)	247, 431, 608, 613
BciT130I	CCWGG	4 cut(s)	379, 449, 573, 649
BcoDI	GTCTC	1 cut(s)	545
BfaI	CTAG	9 cut(s)	8, 29, 155, 183, 254, 528, 609, 635, 642
BfmI	CTRYAG	1 cut(s)	285
BfoI	RGCGCY	1 cut(s)	266
BfuAI	ACCTGC	1 cut(s)	471
BisI	GCNGC	5 cut(s)	99, 114, 162, 675, 682
BlsI	GCNGC	5 cut(s)	100, 115, 163, 676, 683
Bme1390I	CCNGG	4 cut(s)	379, 449, 573, 649
Bme18I	GGWCC	1 cut(s)	381
BmeT110I	CYCGRG	1 cut(s)	85
BmgBI	CACGTC	1 cut(s)	461
BmgT120I	GGNCC	2 cut(s)	18, 381
BmrFI	CCNGG	4 cut(s)	379, 449, 573, 649
BmsI	GCATC	2 cut(s)	169, 259
BpiI	GAAGAC	1 cut(s)	663
BsaHI	GRCGYC	1 cut(s)	387
BsaJI	CCNNGG	1 cut(s)	571
BsaXI	ACNNNNNCTCC	4 cut(s)	39, 69, 286, 316
Bsc4I	CCNNNNNNNGG	3 cut(s)	390, 505, 577
BseBI	CCWGG	4 cut(s)	379, 449, 573, 649
BseDI	CCNNGG	1 cut(s)	571
BseGI	GGATG	3 cut(s)	184, 442, 624
BseLI	CCNNNNNNNGG	3 cut(s)	390, 505, 577
BseRI	GAGGAG	2 cut(s)	294, 297
BseSI	GKGCMC	1 cut(s)	397
BseXI	GCAGC	2 cut(s)	661, 668
BseYI	CCCAGC	5 cut(s)	43, 93, 169, 174, 503
BsgI	GTGCAG	1 cut(s)	499
Bsh1236I	CGCG	4 cut(s)	37, 113, 118, 161
BshFI	GGCC	2 cut(s)	20, 418
BsiHKCI	CYCGRG	1 cut(s)	85
BslI	CCNNNNNNNGG	3 cut(s)	390, 505, 577
BsmAI	GTCTC	1 cut(s)	545
BsmI	GAATGC	1 cut(s)	232
BsnI	GGCC	2 cut(s)	20, 418
BsoBI	CYCGRG	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	397
BspACI	CCGC	5 cut(s)	37, 76, 98, 113, 161
BspANI	GGCC	2 cut(s)	20, 418
BspFNI	CGCG	4 cut(s)	37, 113, 118, 161
BspMI	ACCTGC	1 cut(s)	471
BssECI	CCNNGG	1 cut(s)	571
BssNI	GRCGYC	1 cut(s)	387
Bst2UI	CCWGG	4 cut(s)	379, 449, 573, 649
Bst4CI	ACNGT	1 cut(s)	556
Bst6I	CTCTTC	1 cut(s)	329
BstACI	GRCGYC	1 cut(s)	387
BstC8I	GCNNGC	1 cut(s)	679
BstF5I	GGATG	3 cut(s)	184, 442, 624
BstFNI	CGCG	4 cut(s)	37, 113, 118, 161
BstH2I	RGCGCY	1 cut(s)	266
BstHHI	GCGC	5 cut(s)	37, 113, 118, 161, 265
BstMAI	GTCTC	1 cut(s)	545
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 90, 269
BstNI	CCWGG	4 cut(s)	379, 449, 573, 649
BstNSI	RCATGY	1 cut(s)	666
BstSCI	CCNGG	4 cut(s)	377, 447, 571, 647
BstSFI	CTRYAG	1 cut(s)	285
BstSLI	GKGCMC	1 cut(s)	397
BstUI	CGCG	4 cut(s)	37, 113, 118, 161
BstV1I	GCAGC	2 cut(s)	661, 668
BstV2I	GAAGAC	1 cut(s)	663
BstXI	CCANNNNNNTGG	1 cut(s)	455
BsuRI	GGCC	2 cut(s)	20, 418
BtrI	CACGTC	1 cut(s)	461
BtsCI	GGATG	3 cut(s)	184, 442, 624
BtsIMutI	CAGTG	1 cut(s)	362
BveI	ACCTGC	1 cut(s)	471
Cac8I	GCNNGC	1 cut(s)	679
CfoI	GCGC	5 cut(s)	37, 113, 118, 161, 265
Cfr13I	GGNCC	2 cut(s)	18, 381
CsiI	ACCWGGT	1 cut(s)	377
Csp6I	GTAC	3 cut(s)	236, 525, 666
CviAII	CATG	2 cut(s)	211, 663
CviQI	GTAC	3 cut(s)	236, 525, 666
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
EciI	GGCGGA	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	381
Eco47III	AGCGCT	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	386
Eco88I	CYCGRG	1 cut(s)	85
EcoRII	CCWGG	4 cut(s)	377, 447, 571, 647
FaeI	CATG	2 cut(s)	214, 666
FaiI	YATR	6 cut(s)	212, 414, 546, 587, 630, 664
FatI	CATG	2 cut(s)	210, 662
Fnu4HI	GCNGC	5 cut(s)	99, 114, 162, 675, 682
FokI	GGATG	3 cut(s)	191, 449, 631
Fsp4HI	GCNGC	5 cut(s)	99, 114, 162, 675, 682
FspBI	CTAG	9 cut(s)	8, 29, 155, 183, 254, 528, 609, 635, 642
GlaI	GCGC	5 cut(s)	36, 112, 117, 160, 264
GluI	GCNGC	5 cut(s)	99, 114, 162, 675, 682
GsaI	CCCAGC	5 cut(s)	47, 97, 173, 178, 507
HaeII	RGCGCY	1 cut(s)	266
HaeIII	GGCC	2 cut(s)	20, 418
HhaI	GCGC	5 cut(s)	37, 113, 118, 161, 265
Hin1I	GRCGYC	1 cut(s)	387
Hin1II	CATG	2 cut(s)	214, 666
Hin6I	GCGC	5 cut(s)	35, 111, 116, 159, 263
HinP1I	GCGC	5 cut(s)	35, 111, 116, 159, 263
HinfI	GANTC	1 cut(s)	509
HphI	GGTGA	2 cut(s)	77, 234
Hpy188I	TCNGA	3 cut(s)	276, 294, 385
Hpy188III	TCNNGA	3 cut(s)	87, 358, 642
Hpy99I	CGWCG	2 cut(s)	123, 389
HpyAV	CCTTC	4 cut(s)	343, 361, 534, 584
HpyCH4III	ACNGT	1 cut(s)	556
HpyCH4IV	ACGT	2 cut(s)	387, 460
HpyCH4V	TGCA	2 cut(s)	480, 561
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 90, 269
HpySE526I	ACGT	2 cut(s)	387, 460
Hsp92I	GRCGYC	1 cut(s)	387
Hsp92II	CATG	2 cut(s)	214, 666
HspAI	GCGC	5 cut(s)	35, 111, 116, 159, 263
LmnI	GCTCC	4 cut(s)	207, 277, 295, 307
Lsp1109I	GCAGC	2 cut(s)	661, 668
LweI	GCATC	2 cut(s)	169, 259
MabI	ACCWGGT	1 cut(s)	377
MaeI	CTAG	9 cut(s)	8, 29, 155, 183, 254, 528, 609, 635, 642
MaeII	ACGT	2 cut(s)	387, 460
MaeIII	GTNAC	1 cut(s)	370
MboII	GAAGA	4 cut(s)	346, 358, 504, 668
MhlI	GDGCHC	1 cut(s)	397
MmeI	TCCRAC	3 cut(s)	317, 408, 436
MseI	TTAA	3 cut(s)	279, 536, 605
MspR9I	CCNGG	4 cut(s)	379, 449, 573, 649
MteI	GCGCNGCGC	1 cut(s)	114
Mva1269I	GAATGC	1 cut(s)	232
MvaI	CCWGG	4 cut(s)	379, 449, 573, 649
MvnI	CGCG	4 cut(s)	37, 113, 118, 161
MwoI	GCNNNNNNNGC	3 cut(s)	34, 90, 269
NlaIII	CATG	2 cut(s)	214, 666
NmuCI	GTSAC	1 cut(s)	370
NspI	RCATGY	1 cut(s)	666
PaeR7I	CTCGAG	1 cut(s)	85
PciI	ACATGT	1 cut(s)	662
PctI	GAATGC	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	509
PkrI	GCNGC	5 cut(s)	100, 115, 163, 676, 683
PscI	ACATGT	1 cut(s)	662
Psp6I	CCWGG	4 cut(s)	377, 447, 571, 647
PspFI	CCCAGC	5 cut(s)	43, 93, 169, 174, 503
PspGI	CCWGG	4 cut(s)	377, 447, 571, 647
PspPI	GGNCC	2 cut(s)	18, 381
RsaI	GTAC	3 cut(s)	237, 526, 667
RsaNI	GTAC	3 cut(s)	236, 525, 666
SaqAI	TTAA	3 cut(s)	279, 536, 605
SatI	GCNGC	5 cut(s)	99, 114, 162, 675, 682
Sau96I	GGNCC	2 cut(s)	18, 381
ScrFI	CCNGG	4 cut(s)	379, 449, 573, 649
SduI	GDGCHC	1 cut(s)	397
SexAI	ACCWGGT	1 cut(s)	377
SfaNI	GCATC	2 cut(s)	169, 259
SfcI	CTRYAG	1 cut(s)	285
Sfr274I	CTCGAG	1 cut(s)	85
SinI	GGWCC	1 cut(s)	381
SlaI	CTCGAG	1 cut(s)	85
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
SsiI	CCGC	5 cut(s)	37, 76, 98, 113, 161
SspMI	CTAG	9 cut(s)	8, 29, 155, 183, 254, 528, 609, 635, 642
StyD4I	CCNGG	4 cut(s)	377, 447, 571, 647
TaaI	ACNGT	1 cut(s)	556
TaiI	ACGT	2 cut(s)	390, 463
TaqI	TCGA	1 cut(s)	86
TatI	WGTACW	1 cut(s)	665
TauI	GCSGC	3 cut(s)	101, 116, 164
TfiI	GAWTC	1 cut(s)	509
Tru1I	TTAA	3 cut(s)	279, 536, 605
Tru9I	TTAA	3 cut(s)	279, 536, 605
TscAI	CASTG	1 cut(s)	369
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	2 cut(s)	674, 681
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	369
VpaK11BI	GGWCC	1 cut(s)	381
XbaI	TCTAGA	1 cut(s)	641
XceI	RCATGY	1 cut(s)	666
XhoI	CTCGAG	1 cut(s)	85
XspI	CTAG	9 cut(s)	8, 29, 155, 183, 254, 528, 609, 635, 642
ZraI	GACGTC	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.