Rh1AG017000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001940
Physical Location & Seq
Forward (+)
2921436 .. 2922138
703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG017000.1

Sequence Viewer

Length: 348 bp
ATGCCACCTCTCCAGTTCTCCTCGAATCTTCCTTCAGTCGATTACAGACCTGCGTCGTCGATTCCATCAAGCTCCTCTCGGTTTCTCCCTTTCGTCGATTCCATACTTGATACAGTTCCATATAAGGTATCCAATCGAGCTCCTCTTTCATTGATTCTAATGGCCACTAATGGGAATGTTATTGTACCATCACCGAAAGCTCTAGTTGAACCAAAACCGAGAGTGCTTGAGGCTCTGCCTACTGCTCCGGTTTCTGCTCGTCCTCCTAGACCACCAAAAAGCAAGAGGAAGCGGGCTGCAAAGAAGGCAGTCAAGCCACTGAAGGTCATAGCCTGGTCCAATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.45

Weight (kDa)

11.1

Isoelectric Point (pI)

60.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 58
AciI CCGC 1 cut(s) 292
AcoI YGGCCR 1 cut(s) 162
AcuI CTGAAG 2 cut(s) 18, 341
AfaI GTAC 1 cut(s) 186
AfiI CCNNNNNNNGG 1 cut(s) 171
AgsI TTSAA 1 cut(s) 209
AjnI CCWGG 1 cut(s) 332
AluBI AGCT 3 cut(s) 72, 140, 200
AluI AGCT 3 cut(s) 72, 140, 200
Alw21I GWGCWC 1 cut(s) 142
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 296
AspS9I GGNCC 1 cut(s) 336
AsuHPI GGTGA 1 cut(s) 183
AvaII GGWCC 1 cut(s) 336
BalI TGGCCA 1 cut(s) 164
BanII GRGCYC 1 cut(s) 142
Bbv12I GWGCWC 1 cut(s) 142
BbvI GCAGC 1 cut(s) 283
BccI CCATC 2 cut(s) 73, 196
BciT130I CCWGG 1 cut(s) 334
BciVI GTATCC 1 cut(s) 139
BfaI CTAG 2 cut(s) 203, 267
BfuAI ACCTGC 1 cut(s) 58
BfuI GTATCC 1 cut(s) 139
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
Bme1390I CCNGG 1 cut(s) 334
Bme18I GGWCC 1 cut(s) 336
BmgT120I GGNCC 1 cut(s) 336
BmrFI CCNGG 1 cut(s) 334
BoxI GACNNNNGTC 1 cut(s) 52
BpuEI CTTGAG 1 cut(s) 248
BsaWI WCCGGW 1 cut(s) 247
Bsc4I CCNNNNNNNGG 1 cut(s) 171
Bse1I ACTGG 1 cut(s) 13
BseBI CCWGG 1 cut(s) 334
BseLI CCNNNNNNNGG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 13
BseRI GAGGAG 3 cut(s) 10, 64, 132
BseXI GCAGC 1 cut(s) 283
BshFI GGCC 1 cut(s) 164
BsiHKAI GWGCWC 1 cut(s) 142
BsiSI CCGG 1 cut(s) 248
BslI CCNNNNNNNGG 1 cut(s) 171
BsnI GGCC 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 142
BspACI CCGC 1 cut(s) 292
BspANI GGCC 1 cut(s) 164
BspMI ACCTGC 1 cut(s) 58
BsrI ACTGG 1 cut(s) 13
Bst2UI CCWGG 1 cut(s) 334
Bst4CI ACNGT 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 294
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNI CCWGG 1 cut(s) 334
BstPAI GACNNNNGTC 1 cut(s) 52
BstSCI CCNGG 1 cut(s) 332
BstV1I GCAGC 1 cut(s) 283
BsuI GTATCC 1 cut(s) 139
BsuRI GGCC 1 cut(s) 164
BtsIMutI CAGTG 1 cut(s) 317
BveI ACCTGC 1 cut(s) 58
Cac8I GCNNGC 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 336
CseI GACGC 1 cut(s) 42
Csp6I GTAC 1 cut(s) 185
CviJI RGCY 8 cut(s) 72, 140, 164, 200, 233, 296, 316, 332
CviKI_1 RGCY 8 cut(s) 72, 140, 164, 200, 233, 296, 316, 332
CviQI GTAC 1 cut(s) 185
EaeI YGGCCR 1 cut(s) 162
Ecl136II GAGCTC 1 cut(s) 140
Eco24I GRGCYC 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 336
Eco53kI GAGCTC 1 cut(s) 140
Eco57I CTGAAG 2 cut(s) 18, 341
EcoICRI GAGCTC 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 332
EcoT38I GRGCYC 1 cut(s) 142
FaiI YATR 4 cut(s) 104, 121, 123, 329
FauI CCCGC 1 cut(s) 285
Fnu4HI GCNGC 1 cut(s) 297
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 1 cut(s) 297
FspBI CTAG 2 cut(s) 203, 267
GluI GCNGC 1 cut(s) 297
HaeIII GGCC 1 cut(s) 164
HapII CCGG 1 cut(s) 248
HgaI GACGC 1 cut(s) 42
HinfI GANTC 4 cut(s) 25, 61, 98, 154
HpaII CCGG 1 cut(s) 248
HphI GGTGA 1 cut(s) 183
Hpy188I TCNGA 1 cut(s) 347
Hpy99I CGWCG 3 cut(s) 58, 61, 98
HpyAV CCTTC 3 cut(s) 42, 298, 316
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 1 cut(s) 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
LmnI GCTCC 3 cut(s) 77, 145, 250
LpnPI CCDG 4 cut(s) 26, 63, 261, 319
Lsp1109I GCAGC 1 cut(s) 283
MaeI CTAG 2 cut(s) 203, 267
MboII GAAGA 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 142
MlsI TGGCCA 1 cut(s) 164
MluNI TGGCCA 1 cut(s) 164
MnlI CCTC 7 cut(s) 18, 31, 85, 153, 223, 273, 279
Mox20I TGGCCA 1 cut(s) 164
MscI TGGCCA 1 cut(s) 164
Msp20I TGGCCA 1 cut(s) 164
MspI CCGG 1 cut(s) 248
MspR9I CCNGG 1 cut(s) 334
MvaI CCWGG 1 cut(s) 334
MwoI GCNNNNNNNGC 1 cut(s) 305
PfeI GAWTC 4 cut(s) 25, 61, 98, 154
PkrI GCNGC 1 cut(s) 298
PshAI GACNNNNGTC 1 cut(s) 52
Psp124BI GAGCTC 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 332
PspGI CCWGG 1 cut(s) 332
PspPI GGNCC 1 cut(s) 336
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
SacI GAGCTC 1 cut(s) 142
SatI GCNGC 1 cut(s) 297
Sau96I GGNCC 1 cut(s) 336
ScrFI CCNGG 1 cut(s) 334
SduI GDGCHC 1 cut(s) 142
SetI ASST 7 cut(s) 10, 52, 74, 129, 142, 202, 327
SinI GGWCC 1 cut(s) 336
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
SsiI CCGC 1 cut(s) 292
SspMI CTAG 2 cut(s) 203, 267
SstI GAGCTC 1 cut(s) 142
StyD4I CCNGG 1 cut(s) 332
TaaI ACNGT 1 cut(s) 115
TaqI TCGA 5 cut(s) 23, 39, 59, 96, 136
TfiI GAWTC 4 cut(s) 25, 61, 98, 154
TscAI CASTG 1 cut(s) 324
TseI GCWGC 1 cut(s) 296
TspDTI ATGAA 1 cut(s) 138
TspRI CASTG 1 cut(s) 324
VpaK11BI GGWCC 1 cut(s) 336
XspI CTAG 2 cut(s) 203, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.