Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001940

Physical Location & Seq

Genomic Coordinates Forward (+)

66326099 .. 66335725

Gene Structure 9627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG465800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCTACTGATGGGAATGCTATTGTACCATCGCCGACAGCTCCAGTGGAACCAAACCCTGCAGCGCCTGATGCTCCGGTTAAGCCTACAGCTTCGACATCTGGTCATCCTCCAAGACCAACAAAAGCCAAGAGGAAGAGGGCTGAGAAGAAGGCAGTCAAGACACTGAATGTCACAACCAGGTCCGACGTCTGGGCACACTTTGAGAAGTTTGATCGGCCAATAGTGGAAGTGGTGGATGGAAAGAAGCAGGAAGTTGGACGTCAAAGAACTGAAGCTTCCAGAATCGACGACTCTCGAGCCAATCAGTCCGGATTTGTCCTCAACCATCCGAATTTAAGCCCCCGCTCCACAGAAGCCAAAGAAAGAACCCCCCCCGATGACGAAAAGAGGATGATGAAAATAGTGGCCAGAAGCTTGATAAAAGTAGTGATCAGACCTGGTGGAGGTGATTCAACACCTTCAGATGGTGATCAGATCGATGAGGTTCAGCTTAGGATGAACTCAAGCATTTCAAACAAGCCATTGGAATTGGATACCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000038 GO:0000413 GO:0000902 GO:0003006 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0006082 GO:0006457 GO:0006464 GO:0006629 GO:0006631 GO:0006633 GO:0006807 GO:0007163 GO:0007275 GO:0007389 GO:0008144 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009880 GO:0009987 GO:0010033 GO:0010154 GO:0012505 GO:0016043 GO:0016049 GO:0016053 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0019752 GO:0022414 GO:0022622 GO:0030010 GO:0030154 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0036211 GO:0040007 GO:0042221 GO:0042761 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048316 GO:0048364 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0061077 GO:0061458 GO:0071704 GO:0071840 GO:0072330 GO:0090696 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_1 TPR_2 TPR_6 TPR_8

Protein Analysis

181

Amino Acids

19.85

Weight (kDa)

9.55

Isoelectric Point (pI)

48.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001940)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0054121 RchiOBHm_Chr5g0075631 RchiOBHm_Chr7g0218761
rosa_laevigata	RLG00000019954
rosa_multiflora	Rmu_co8337375.1_g000001 Rmu_sc0002724.1_g000041 Rmu_sc0003010.1_g000001 Rmu_ssc0000055.1_g000007
rosa_roxburghii	Rroxscaffold_2G00134930 Rroxscaffold_3G00245470
rosa_rugosa	Rorug02G0540100 Rorug04G0078000 Rorug07G0291900
rosa_samantha	Rh1AG017000 Rh1BG425200 Rh1CG073600 Rh1CG400600 Rh1DG047900 Rh1DG080500 Rh1DG458000 Rh2AG189900 Rh2DG158300 Rh2DG556600 Rh3AG195400 Rh3AG237500 Rh3BG189900 Rh3BG225600 Rh3BG288600 Rh3CG179800 Rh3CG220400 Rh3CG270300 Rh3DG221000 Rh4AG241700 Rh5AG065800 Rh5AG087600 Rh5AG472000 Rh5AG542700 Rh5BG423000 Rh5CG282600 Rh5DG082100 Rh6AG078100 Rh6BG094300 Rh6CG332600 Rh6DG209500 Rh7AG037100 Rh7DG465800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	192, 265
AccBSI	CCGCTC	1 cut(s)	348
AccIII	TCCGGA	1 cut(s)	311
AciI	CCGC	1 cut(s)	346
AcoI	YGGCCR	2 cut(s)	218, 408
AcsI	RAATTY	1 cut(s)	334
AcuI	CTGAAG	2 cut(s)	294, 447
AcyI	GRCGYC	2 cut(s)	189, 262
AfaI	GTAC	1 cut(s)	27
AfiI	CCNNNNNNNGG	3 cut(s)	192, 446, 467
AgsI	TTSAA	2 cut(s)	456, 516
AhdI	GACNNNNNGTC	1 cut(s)	102
AjnI	CCWGG	3 cut(s)	179, 439, 539
AluBI	AGCT	5 cut(s)	41, 92, 278, 417, 493
AluI	AGCT	5 cut(s)	41, 92, 278, 417, 493
AlwNI	CAGNNNCTG	1 cut(s)	68
Ama87I	CYCGRG	1 cut(s)	297
Aor13HI	TCCGGA	1 cut(s)	311
AoxI	GGCC	2 cut(s)	218, 408
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	1 cut(s)	334
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	183
AsuHPI	GGTGA	2 cut(s)	461, 482
AvaI	CYCGRG	1 cut(s)	297
AvaII	GGWCC	1 cut(s)	183
BaeGI	GKGCMC	1 cut(s)	199
BalI	TGGCCA	1 cut(s)	410
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	5 cut(s)	5, 37, 233, 336, 461
BciT130I	CCWGG	3 cut(s)	181, 441, 541
BciVI	GTATCC	1 cut(s)	529
BclI	TGATCA	2 cut(s)	432, 472
BfmI	CTRYAG	2 cut(s)	60, 87
BfoI	RGCGCY	1 cut(s)	68
BfuI	GTATCC	1 cut(s)	529
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	3 cut(s)	181, 441, 541
Bme18I	GGWCC	1 cut(s)	183
BmeRI	GACNNNNNGTC	1 cut(s)	102
BmeT110I	CYCGRG	1 cut(s)	297
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	3 cut(s)	181, 441, 541
BmsI	GCATC	1 cut(s)	61
BpmI	CTGGAG	1 cut(s)	27
Bpu10I	CCTNAGC	1 cut(s)	494
BpuEI	CTTGAG	1 cut(s)	490
Bsa29I	ATCGAT	1 cut(s)	480
BsaBI	GATNNNNATC	1 cut(s)	471
BsaHI	GRCGYC	2 cut(s)	189, 262
BsaWI	WCCGGW	2 cut(s)	76, 311
Bsc4I	CCNNNNNNNGG	3 cut(s)	192, 446, 467
Bse1I	ACTGG	1 cut(s)	44
Bse8I	GATNNNNATC	1 cut(s)	471
BseAI	TCCGGA	1 cut(s)	311
BseBI	CCWGG	3 cut(s)	181, 441, 541
BseCI	ATCGAT	1 cut(s)	480
BseGI	GGATG	5 cut(s)	106, 244, 328, 399, 504
BseJI	GATNNNNATC	1 cut(s)	471
BseLI	CCNNNNNNNGG	3 cut(s)	192, 446, 467
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	1 cut(s)	44
BseSI	GKGCMC	1 cut(s)	199
BseXI	GCAGC	1 cut(s)	74
BshFI	GGCC	2 cut(s)	220, 410
BshVI	ATCGAT	1 cut(s)	480
BsiHKCI	CYCGRG	1 cut(s)	297
BsiSI	CCGG	2 cut(s)	77, 312
BslI	CCNNNNNNNGG	3 cut(s)	192, 446, 467
BsmI	GAATGC	1 cut(s)	22
BsnI	GGCC	2 cut(s)	220, 410
BsoBI	CYCGRG	1 cut(s)	297
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp13I	TCCGGA	1 cut(s)	311
Bsp143I	GATC	4 cut(s)	214, 432, 472, 477
BspACI	CCGC	1 cut(s)	346
BspANI	GGCC	2 cut(s)	220, 410
BspCNI	CTCAG	1 cut(s)	136
BspDI	ATCGAT	1 cut(s)	480
BspEI	TCCGGA	1 cut(s)	311
BspLI	GGNNCC	1 cut(s)	51
BspMAI	CTGCAG	1 cut(s)	64
BsrBI	CCGCTC	1 cut(s)	348
BsrI	ACTGG	1 cut(s)	44
BssMI	GATC	4 cut(s)	214, 432, 472, 477
BssNI	GRCGYC	2 cut(s)	189, 262
Bst2UI	CCWGG	3 cut(s)	181, 441, 541
Bst6I	CTCTTC	1 cut(s)	131
BstACI	GRCGYC	2 cut(s)	189, 262
BstDEI	CTNAG	2 cut(s)	144, 494
BstENI	CCTNNNNNAGG	1 cut(s)	444
BstF5I	GGATG	5 cut(s)	106, 244, 328, 399, 504
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	4 cut(s)	217, 435, 475, 480
BstMBI	GATC	4 cut(s)	214, 432, 472, 477
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNI	CCWGG	3 cut(s)	181, 441, 541
BstSCI	CCNGG	3 cut(s)	179, 439, 539
BstSFI	CTRYAG	2 cut(s)	60, 87
BstSLI	GKGCMC	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	74
Bsu15I	ATCGAT	1 cut(s)	480
BsuI	GTATCC	1 cut(s)	529
BsuRI	GGCC	2 cut(s)	220, 410
BsuTUI	ATCGAT	1 cut(s)	480
BtgZI	GCGATG	1 cut(s)	15
BtsCI	GGATG	5 cut(s)	106, 244, 328, 399, 504
BtsIMutI	CAGTG	2 cut(s)	51, 164
CaiI	CAGNNNCTG	1 cut(s)	68
CfoI	GCGC	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	183
ClaI	ATCGAT	1 cut(s)	480
CsiI	ACCWGGT	3 cut(s)	179, 439, 539
Csp6I	GTAC	1 cut(s)	26
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	2 cut(s)	144, 494
DpnI	GATC	4 cut(s)	216, 434, 474, 479
DpnII	GATC	4 cut(s)	214, 432, 472, 477
DriI	GACNNNNNGTC	1 cut(s)	102
EaeI	YGGCCR	2 cut(s)	218, 408
Eam1104I	CTCTTC	1 cut(s)	131
Eam1105I	GACNNNNNGTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	183
Eco57I	CTGAAG	2 cut(s)	294, 447
Eco88I	CYCGRG	1 cut(s)	297
EcoNI	CCTNNNNNAGG	1 cut(s)	444
EcoRII	CCWGG	3 cut(s)	179, 439, 539
FauI	CCCGC	1 cut(s)	353
FbaI	TGATCA	2 cut(s)	432, 472
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	5 cut(s)	93, 251, 315, 406, 511
Fsp4HI	GCNGC	1 cut(s)	63
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	1 cut(s)	63
GsuI	CTGGAG	1 cut(s)	27
HaeII	RGCGCY	1 cut(s)	68
HaeIII	GGCC	2 cut(s)	220, 410
HapII	CCGG	2 cut(s)	77, 312
HhaI	GCGC	1 cut(s)	67
Hin1I	GRCGYC	2 cut(s)	189, 262
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HindIII	AAGCTT	2 cut(s)	276, 415
HinfI	GANTC	3 cut(s)	285, 293, 452
HpaII	CCGG	2 cut(s)	77, 312
HphI	GGTGA	2 cut(s)	461, 482
Hpy188I	TCNGA	5 cut(s)	187, 333, 437, 466, 477
Hpy188III	TCNNGA	4 cut(s)	160, 282, 297, 312
Hpy99I	CGWCG	2 cut(s)	191, 293
HpyAV	CCTTC	2 cut(s)	145, 471
HpyCH4IV	ACGT	2 cut(s)	189, 262
HpyCH4V	TGCA	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	2 cut(s)	144, 494
HpySE526I	ACGT	2 cut(s)	189, 262
Hsp92I	GRCGYC	2 cut(s)	189, 262
HspAI	GCGC	1 cut(s)	65
Kpn2I	TCCGGA	1 cut(s)	311
Ksp22I	TGATCA	2 cut(s)	432, 472
Kzo9I	GATC	4 cut(s)	214, 432, 472, 477
LmnI	GCTCC	3 cut(s)	46, 79, 353
Lsp1109I	GCAGC	1 cut(s)	74
LweI	GCATC	1 cut(s)	61
MabI	ACCWGGT	3 cut(s)	179, 439, 539
MaeII	ACGT	2 cut(s)	189, 262
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	4 cut(s)	216, 434, 474, 479
MbiI	CCGCTC	1 cut(s)	348
MboI	GATC	4 cut(s)	214, 432, 472, 477
MboII	GAAGA	2 cut(s)	148, 160
MhlI	GDGCHC	1 cut(s)	199
MlsI	TGGCCA	1 cut(s)	410
MluCI	AATT	2 cut(s)	334, 530
MluNI	TGGCCA	1 cut(s)	410
MlyI	GAGTC	1 cut(s)	287
MmeI	TCCRAC	2 cut(s)	210, 238
MnlI	CCTC	7 cut(s)	120, 126, 132, 332, 384, 440, 478
Mox20I	TGGCCA	1 cut(s)	410
MroI	TCCGGA	1 cut(s)	311
MscI	TGGCCA	1 cut(s)	410
MseI	TTAA	2 cut(s)	81, 338
Msp20I	TGGCCA	1 cut(s)	410
MspI	CCGG	2 cut(s)	77, 312
MspR9I	CCNGG	3 cut(s)	181, 441, 541
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	3 cut(s)	181, 441, 541
MwoI	GCNNNNNNNGC	1 cut(s)	71
NdeII	GATC	4 cut(s)	214, 432, 472, 477
NlaIV	GGNNCC	1 cut(s)	51
NmuCI	GTSAC	1 cut(s)	172
PaeR7I	CTCGAG	1 cut(s)	297
PctI	GAATGC	1 cut(s)	22
PfeI	GAWTC	2 cut(s)	285, 452
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
Psp6I	CCWGG	3 cut(s)	179, 439, 539
PspGI	CCWGG	3 cut(s)	179, 439, 539
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	1 cut(s)	183
PstI	CTGCAG	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	68
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	81, 338
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	4 cut(s)	214, 432, 472, 477
Sau96I	GGNCC	1 cut(s)	183
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	3 cut(s)	181, 441, 541
SduI	GDGCHC	1 cut(s)	199
SexAI	ACCWGGT	3 cut(s)	179, 439, 539
SfaNI	GCATC	1 cut(s)	61
SfcI	CTRYAG	2 cut(s)	60, 87
Sfr274I	CTCGAG	1 cut(s)	297
SinI	GGWCC	1 cut(s)	183
SlaI	CTCGAG	1 cut(s)	297
SmlI	CTYRAG	2 cut(s)	297, 505
SmoI	CTYRAG	2 cut(s)	297, 505
Sse9I	AATT	2 cut(s)	334, 530
SsiI	CCGC	1 cut(s)	346
StyD4I	CCNGG	3 cut(s)	179, 439, 539
TaiI	ACGT	2 cut(s)	192, 265
TaqI	TCGA	4 cut(s)	95, 288, 298, 480
TasI	AATT	2 cut(s)	334, 530
TfiI	GAWTC	2 cut(s)	285, 452
Tru1I	TTAA	2 cut(s)	81, 338
Tru9I	TTAA	2 cut(s)	81, 338
TscAI	CASTG	2 cut(s)	51, 171
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	413, 515
TspRI	CASTG	2 cut(s)	51, 171
VpaK11BI	GGWCC	1 cut(s)	183
XagI	CCTNNNNNAGG	1 cut(s)	444
XapI	RAATTY	1 cut(s)	334
XhoI	CTCGAG	1 cut(s)	297
ZraI	GACGTC	2 cut(s)	190, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.