Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001940

Physical Location & Seq

Genomic Coordinates Reverse (-)

78640766 .. 78643383

Gene Structure 2618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG556600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCCACCGATGGGAATGCTATTGTACCATTGCCGAAAGCTCCAGCTGAACCCAACCCGGGAGCGCCTGAGGCTCCGCCTACGGCTCCAACGTCTGCTCGTCCTCCTAGACCATCAAAAAGCAAGAGAAAGCGGGCTGAAAAGAAGGCAGTGAAGCCACTGAAGGTCACAGCCAGTATTAATTTAATGTTTTTGAATGAAATGGCAGACTATGCGAAGGATAAGGCTGCTGAACAATCAGCAAAAAAGGCTGCTTGTAGGGCCAAAAAATCGAAGATGGCTGCTGGGACAAGTGTGGAAGCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

102

Amino Acids

10.67

Weight (kDa)

10.11

Isoelectric Point (pI)

52.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001940)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0054121 RchiOBHm_Chr5g0075631 RchiOBHm_Chr7g0218761
rosa_laevigata	RLG00000019954
rosa_multiflora	Rmu_co8337375.1_g000001 Rmu_sc0002724.1_g000041 Rmu_sc0003010.1_g000001 Rmu_ssc0000055.1_g000007
rosa_roxburghii	Rroxscaffold_2G00134930 Rroxscaffold_3G00245470
rosa_rugosa	Rorug02G0540100 Rorug04G0078000 Rorug07G0291900
rosa_samantha	Rh1AG017000 Rh1BG425200 Rh1CG073600 Rh1CG400600 Rh1DG047900 Rh1DG080500 Rh1DG458000 Rh2AG189900 Rh2DG158300 Rh2DG556600 Rh3AG195400 Rh3AG237500 Rh3BG189900 Rh3BG225600 Rh3BG288600 Rh3CG179800 Rh3CG220400 Rh3CG270300 Rh3DG221000 Rh4AG241700 Rh5AG065800 Rh5AG087600 Rh5AG472000 Rh5AG542700 Rh5BG423000 Rh5CG282600 Rh5DG082100 Rh6AG078100 Rh6BG094300 Rh6CG332600 Rh6DG209500 Rh7AG037100 Rh7DG465800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	77, 133
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	182
AfaI	GTAC	1 cut(s)	27
AfiI	CCNNNNNNNGG	2 cut(s)	12, 59
AgsI	TTSAA	1 cut(s)	196
AluBI	AGCT	2 cut(s)	41, 47
AluI	AGCT	2 cut(s)	41, 47
Ama87I	CYCGRG	1 cut(s)	58
AoxI	GGCC	2 cut(s)	3, 261
ApeKI	GCWGC	3 cut(s)	227, 251, 281
AseI	ATTAAT	1 cut(s)	180
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	261
AsuC2I	CCSGG	2 cut(s)	59, 60
AvaI	CYCGRG	1 cut(s)	58
AxyI	CCTNAGG	1 cut(s)	69
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	3 cut(s)	214, 238, 268
BccI	CCATC	3 cut(s)	5, 121, 271
BceAI	ACGGC	1 cut(s)	99
BcgI	CGANNNNNNTGC	1 cut(s)	33
BcnI	CCSGG	2 cut(s)	59, 60
BfaI	CTAG	1 cut(s)	108
BfoI	RGCGCY	1 cut(s)	68
BisI	GCNGC	3 cut(s)	228, 252, 282
BlsI	GCNGC	3 cut(s)	229, 253, 283
Bme1390I	CCNGG	2 cut(s)	59, 60
BmeT110I	CYCGRG	1 cut(s)	58
BmgT120I	GGNCC	1 cut(s)	261
BmiI	GGNNCC	2 cut(s)	75, 87
BmrFI	CCNGG	2 cut(s)	59, 60
BpmI	CTGGAG	1 cut(s)	27
BpuMI	CCSGG	2 cut(s)	59, 60
BsaJI	CCNNGG	1 cut(s)	58
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 59
Bse1I	ACTGG	1 cut(s)	174
Bse21I	CCTNAGG	1 cut(s)	69
Bse3DI	GCAATG	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	58
BseLI	CCNNNNNNNGG	2 cut(s)	12, 59
BseMI	GCAATG	1 cut(s)	29
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	174
BseXI	GCAGC	3 cut(s)	214, 238, 268
BseYI	CCCAGC	1 cut(s)	284
BshFI	GGCC	2 cut(s)	5, 263
BsiHKCI	CYCGRG	1 cut(s)	58
BsiSI	CCGG	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	301
BslI	CCNNNNNNNGG	2 cut(s)	12, 59
BsmFI	GGGAC	1 cut(s)	301
BsmI	GAATGC	1 cut(s)	22
BsnI	GGCC	2 cut(s)	5, 263
BsoBI	CYCGRG	1 cut(s)	58
BspACI	CCGC	2 cut(s)	77, 133
BspANI	GGCC	2 cut(s)	5, 263
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	2 cut(s)	75, 87
BsrDI	GCAATG	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	174
BssECI	CCNNGG	1 cut(s)	58
BstAPI	GCANNNNNTGC	1 cut(s)	212
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	1 cut(s)	69
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	67
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 212, 248, 260
BstSCI	CCNGG	2 cut(s)	57, 58
BstV1I	GCAGC	3 cut(s)	214, 238, 268
Bsu36I	CCTNAGG	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	5, 263
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	2 cut(s)	156, 158
Cac8I	GCNNGC	1 cut(s)	135
CfoI	GCGC	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	261
Cfr9I	CCCGGG	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	26
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	1 cut(s)	69
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	182
Eco81I	CCTNAGG	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	58
FaiI	YATR	1 cut(s)	213
FaqI	GGGAC	1 cut(s)	301
FauI	CCCGC	1 cut(s)	126
Fnu4HI	GCNGC	3 cut(s)	228, 252, 282
Fsp4HI	GCNGC	3 cut(s)	228, 252, 282
FspBI	CTAG	1 cut(s)	108
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	3 cut(s)	228, 252, 282
GsaI	CCCAGC	1 cut(s)	288
GsuI	CTGGAG	1 cut(s)	27
HaeII	RGCGCY	1 cut(s)	68
HaeIII	GGCC	2 cut(s)	5, 263
HapII	CCGG	1 cut(s)	59
HhaI	GCGC	1 cut(s)	67
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HpaII	CCGG	1 cut(s)	59
HpyAV	CCTTC	3 cut(s)	139, 157, 211
HpyCH4IV	ACGT	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 212, 248, 260
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	1 cut(s)	92
HspAI	GCGC	1 cut(s)	65
LmnI	GCTCC	4 cut(s)	46, 62, 79, 91
LpnPI	CCDG	5 cut(s)	57, 72, 81, 187, 270
Lsp1109I	GCAGC	3 cut(s)	214, 238, 268
MaeI	CTAG	1 cut(s)	108
MaeII	ACGT	1 cut(s)	92
MaeIII	GTNAC	1 cut(s)	166
MboII	GAAGA	1 cut(s)	286
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	181, 304
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	2 cut(s)	64, 114
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	180, 185, 307
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	2 cut(s)	59, 60
Mva1269I	GAATGC	1 cut(s)	22
MwoI	GCNNNNNNNGC	4 cut(s)	71, 212, 248, 260
NciI	CCSGG	2 cut(s)	59, 60
NlaIV	GGNNCC	2 cut(s)	75, 87
NmuCI	GTSAC	1 cut(s)	166
PcsI	WCGNNNNNNNCGW	1 cut(s)	89
PctI	GAATGC	1 cut(s)	22
PkrI	GCNGC	3 cut(s)	229, 253, 283
PshBI	ATTAAT	1 cut(s)	180
PspFI	CCCAGC	1 cut(s)	284
PspN4I	GGNNCC	2 cut(s)	75, 87
PspPI	GGNCC	1 cut(s)	261
PvuII	CAGCTG	1 cut(s)	47
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
SaqAI	TTAA	3 cut(s)	180, 185, 307
SatI	GCNGC	3 cut(s)	228, 252, 282
Sau96I	GGNCC	1 cut(s)	261
ScrFI	CCNGG	2 cut(s)	59, 60
SetI	ASST	4 cut(s)	43, 49, 95, 168
SmaI	CCCGGG	1 cut(s)	60
Sse9I	AATT	2 cut(s)	181, 304
SsiI	CCGC	2 cut(s)	77, 133
SspMI	CTAG	1 cut(s)	108
StyD4I	CCNGG	2 cut(s)	57, 58
TaiI	ACGT	1 cut(s)	95
TaqI	TCGA	1 cut(s)	272
TasI	AATT	2 cut(s)	181, 304
Tru1I	TTAA	3 cut(s)	180, 185, 307
Tru9I	TTAA	3 cut(s)	180, 185, 307
TscAI	CASTG	2 cut(s)	156, 165
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	3 cut(s)	227, 251, 281
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	1 cut(s)	213
TspMI	CCCGGG	1 cut(s)	58
TspRI	CASTG	2 cut(s)	156, 165
VspI	ATTAAT	1 cut(s)	180
XmaI	CCCGGG	1 cut(s)	58
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.