Rh4AG241700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001940
Physical Location & Seq
Reverse (-)
54851049 .. 54853775
2727 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG241700.1

Sequence Viewer

Length: 357 bp
ATGGCTACTGATGGGAATGCTATTGTACCATCACCGACAGCTCCAGCGAGAGCGCCTGATGCTCCGATTGAGCCTACAGCTCAGACATCTGCTCCTCCTCCAATAGCACCACAAAGCAAGAGGAAGAGGGCTGCGAAGAAGGCAGTCAAGACACTGAAGGTCACAACCAGGTCCGACGTCTGGGCACACTTTGAGAAGTTTGATAGGCCAATAATGGAAGTGGTGGATGGAAAGAAGCAGGAAGTTGGACATTATGCGAAGGAGAAATCCAGTGAACAATCAGCAAAAAAGGCTGCTGCTTGTAAGGCAAAAAAATCGAAGCTGGCTGAGAAGTCAGGTATCGTGATTGCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.59

Weight (kDa)

9.96

Isoelectric Point (pI)

62.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 180
AcuI CTGAAG 1 cut(s) 176
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 1 cut(s) 27
AfiI CCNNNNNNNGG 1 cut(s) 180
AjnI CCWGG 1 cut(s) 167
AluBI AGCT 3 cut(s) 41, 80, 322
AluI AGCT 3 cut(s) 41, 80, 322
AoxI GGCC 1 cut(s) 206
ApeKI GCWGC 3 cut(s) 131, 293, 296
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 171
AsuHPI GGTGA 1 cut(s) 24
AvaII GGWCC 1 cut(s) 171
BaeGI GKGCMC 1 cut(s) 187
BbvI GCAGC 3 cut(s) 118, 280, 283
BccI CCATC 3 cut(s) 5, 37, 221
BcgI CGANNNNNNTGC 2 cut(s) 297, 331
BciT130I CCWGG 1 cut(s) 169
BfmI CTRYAG 1 cut(s) 75
BfoI RGCGCY 1 cut(s) 56
BisI GCNGC 3 cut(s) 132, 294, 297
BlsI GCNGC 3 cut(s) 133, 295, 298
Bme1390I CCNGG 1 cut(s) 169
Bme18I GGWCC 1 cut(s) 171
BmgT120I GGNCC 1 cut(s) 171
BmrFI CCNGG 1 cut(s) 169
BmsI GCATC 1 cut(s) 49
BpmI CTGGAG 1 cut(s) 27
BsaHI GRCGYC 1 cut(s) 177
BsaXI ACNNNNNCTCC 2 cut(s) 76, 106
Bsc4I CCNNNNNNNGG 1 cut(s) 180
Bse1I ACTGG 1 cut(s) 270
BseBI CCWGG 1 cut(s) 169
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 1 cut(s) 180
BseMII CTCAG 2 cut(s) 95, 318
BseNI ACTGG 1 cut(s) 270
BseRI GAGGAG 2 cut(s) 84, 87
BseSI GKGCMC 1 cut(s) 187
BseXI GCAGC 3 cut(s) 118, 280, 283
BshFI GGCC 1 cut(s) 208
BslI CCNNNNNNNGG 1 cut(s) 180
BsmI GAATGC 1 cut(s) 22
BsnI GGCC 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 187
BspANI GGCC 1 cut(s) 208
BspCNI CTCAG 2 cut(s) 94, 319
BsrI ACTGG 1 cut(s) 270
BssNI GRCGYC 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 119
BstACI GRCGYC 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 2 cut(s) 81, 327
BstF5I GGATG 1 cut(s) 232
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 1 cut(s) 55
BstMWI GCNNNNNNNGC 4 cut(s) 59, 140, 290, 305
BstNI CCWGG 1 cut(s) 169
BstSCI CCNGG 1 cut(s) 167
BstSFI CTRYAG 1 cut(s) 75
BstSLI GKGCMC 1 cut(s) 187
BstV1I GCAGC 3 cut(s) 118, 280, 283
BsuRI GGCC 1 cut(s) 208
BtsCI GGATG 1 cut(s) 232
BtsIMutI CAGTG 2 cut(s) 152, 277
Cac8I GCNNGC 1 cut(s) 324
CfoI GCGC 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 171
CsiI ACCWGGT 1 cut(s) 167
Csp6I GTAC 1 cut(s) 26
CviJI RGCY 9 cut(s) 5, 41, 73, 80, 131, 208, 293, 322, 326
CviKI_1 RGCY 9 cut(s) 5, 41, 73, 80, 131, 208, 293, 322, 326
CviQI GTAC 1 cut(s) 26
DdeI CTNAG 2 cut(s) 81, 327
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco47I GGWCC 1 cut(s) 171
Eco57I CTGAAG 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 167
FaiI YATR 1 cut(s) 255
Fnu4HI GCNGC 3 cut(s) 132, 294, 297
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 3 cut(s) 132, 294, 297
GlaI GCGC 1 cut(s) 54
GluI GCNGC 3 cut(s) 132, 294, 297
GsuI CTGGAG 1 cut(s) 27
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 1 cut(s) 208
HhaI GCGC 1 cut(s) 55
Hin1I GRCGYC 1 cut(s) 177
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HphI GGTGA 1 cut(s) 24
Hpy166II GTNNAC 1 cut(s) 275
Hpy188I TCNGA 3 cut(s) 66, 84, 175
Hpy188III TCNNGA 2 cut(s) 148, 343
Hpy8I GTNNAC 1 cut(s) 275
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 3 cut(s) 133, 151, 253
HpyCH4IV ACGT 1 cut(s) 177
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 140, 290, 305
HpyF3I CTNAG 2 cut(s) 81, 327
HpySE526I ACGT 1 cut(s) 177
Hsp92I GRCGYC 1 cut(s) 177
HspAI GCGC 1 cut(s) 53
LmnI GCTCC 3 cut(s) 46, 67, 97
LpnPI CCDG 9 cut(s) 57, 69, 154, 166, 181, 224, 283, 308, 321
Lsp1109I GCAGC 3 cut(s) 118, 280, 283
LweI GCATC 1 cut(s) 49
MabI ACCWGGT 1 cut(s) 167
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 1 cut(s) 160
MboII GAAGA 2 cut(s) 136, 148
MfeI CAATTG 1 cut(s) 352
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 1 cut(s) 352
MmeI TCCRAC 2 cut(s) 198, 226
MnlI CCTC 4 cut(s) 105, 108, 114, 120
MspR9I CCNGG 1 cut(s) 169
MunI CAATTG 1 cut(s) 352
Mva1269I GAATGC 1 cut(s) 22
MvaI CCWGG 1 cut(s) 169
MwoI GCNNNNNNNGC 4 cut(s) 59, 140, 290, 305
NmuCI GTSAC 1 cut(s) 160
PctI GAATGC 1 cut(s) 22
PkrI GCNGC 3 cut(s) 133, 295, 298
Psp6I CCWGG 1 cut(s) 167
PspGI CCWGG 1 cut(s) 167
PspPI GGNCC 1 cut(s) 171
RsaI GTAC 1 cut(s) 27
RsaNI GTAC 1 cut(s) 26
SatI GCNGC 3 cut(s) 132, 294, 297
Sau96I GGNCC 1 cut(s) 171
ScrFI CCNGG 1 cut(s) 169
SduI GDGCHC 1 cut(s) 187
SetI ASST 7 cut(s) 43, 82, 162, 173, 180, 324, 340
SexAI ACCWGGT 1 cut(s) 167
SfaNI GCATC 1 cut(s) 49
SfcI CTRYAG 1 cut(s) 75
SinI GGWCC 1 cut(s) 171
Sse9I AATT 1 cut(s) 352
StyD4I CCNGG 1 cut(s) 167
TaiI ACGT 1 cut(s) 180
TaqI TCGA 1 cut(s) 317
TasI AATT 1 cut(s) 352
TscAI CASTG 2 cut(s) 159, 277
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 3 cut(s) 131, 293, 296
Tsp45I GTSAC 1 cut(s) 160
TspRI CASTG 2 cut(s) 159, 277
VpaK11BI GGWCC 1 cut(s) 171
ZraI GACGTC 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.