RLG00000019954

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001940
Physical Location & Seq
Reverse (-)
59098280 .. 59100693
2414 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019954

Sequence Viewer

Length: 402 bp
ATGTCAAGGACATCTTGGGTTTGCTCAAAACCATGCATCCCTTGTAGCGGGAGAAGAAATCGCAGCCTCGCAAGGAGTCTCAGTGCAAACCCTATGGCATTTCACGAGTATGCATTCTTCAGCTGTTTCGGATTTGAATTGCTAGTGGTAGGTGTTGGCAATGGCTTCCTTTTACAATTTCTGCACGGAATGATGACTTACAGCTTTTACCATTGGATTAGAGTTGTCAACAGTGTCCTGCCTATTGGTGACTATTCCTTTGTTAAGAATAACAAGCGTGCGACTAAAAATTGGCCTGAAACTGATGATGCTGTTGAAAAGGTCCATGAAGGTGCATTTGGTTCTGTTGGTGATGATCAGTTACTTCGTAATTACTTGGAATCTGTGGGACAACATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.07

Weight (kDa)

8.4

Isoelectric Point (pI)

36.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 48
AcuI CTGAAG 1 cut(s) 103
AfiI CCNNNNNNNGG 1 cut(s) 47
AgsI TTSAA 2 cut(s) 137, 317
AjuI GAANNNNNNNTTGG 2 cut(s) 321, 353
AluBI AGCT 2 cut(s) 123, 204
AluI AGCT 2 cut(s) 123, 204
Alw26I GTCTC 1 cut(s) 83
AoxI GGCC 1 cut(s) 293
ApeKI GCWGC 1 cut(s) 63
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
AspS9I GGNCC 1 cut(s) 322
AsuHPI GGTGA 2 cut(s) 260, 362
AvaII GGWCC 1 cut(s) 322
BarI GAAGNNNNNNTAC 2 cut(s) 101, 133
BauI CACGAG 1 cut(s) 104
BbvI GCAGC 1 cut(s) 75
BclI TGATCA 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 1 cut(s) 143
BisI GCNGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 65
Bme18I GGWCC 1 cut(s) 322
BmgT120I GGNCC 1 cut(s) 322
BmsI GCATC 2 cut(s) 45, 298
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse3DI GCAATG 1 cut(s) 166
BseGI GGATG 1 cut(s) 36
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMI GCAATG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 94
BseXI GCAGC 1 cut(s) 75
BsgI GTGCAG 1 cut(s) 167
BshFI GGCC 1 cut(s) 295
BslI CCNNNNNNNGG 1 cut(s) 47
BsmAI GTCTC 1 cut(s) 83
BsmI GAATGC 1 cut(s) 113
BsnI GGCC 1 cut(s) 295
Bsp143I GATC 1 cut(s) 355
BspACI CCGC 1 cut(s) 48
BspANI GGCC 1 cut(s) 295
BspCNI CTCAG 1 cut(s) 93
BsrDI GCAATG 1 cut(s) 166
BssMI GATC 1 cut(s) 355
BssSI CACGAG 1 cut(s) 104
Bst2BI CACGAG 1 cut(s) 104
Bst4CI ACNGT 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 279
BstDEI CTNAG 1 cut(s) 80
BstF5I GGATG 1 cut(s) 36
BstKTI GATC 1 cut(s) 358
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 1 cut(s) 355
BstV1I GCAGC 1 cut(s) 75
BsuRI GGCC 1 cut(s) 295
BtsCI GGATG 1 cut(s) 36
BtsIMutI CAGTG 2 cut(s) 88, 238
Cac8I GCNNGC 1 cut(s) 279
Cfr13I GGNCC 1 cut(s) 322
CviAII CATG 2 cut(s) 33, 326
CviJI RGCY 5 cut(s) 66, 123, 165, 204, 295
CviKI_1 RGCY 5 cut(s) 66, 123, 165, 204, 295
DdeI CTNAG 1 cut(s) 80
DpnI GATC 1 cut(s) 357
DpnII GATC 1 cut(s) 355
Eco47I GGWCC 1 cut(s) 322
Eco57I CTGAAG 1 cut(s) 103
EcoT22I ATGCAT 2 cut(s) 38, 115
FaeI CATG 2 cut(s) 36, 329
FaiI YATR 4 cut(s) 34, 95, 111, 327
FalI AAGNNNNNCTT 1 cut(s) 30
FatI CATG 2 cut(s) 32, 325
FauI CCCGC 1 cut(s) 41
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 1 cut(s) 64
FokI GGATG 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 64
FspBI CTAG 1 cut(s) 143
GluI GCNGC 1 cut(s) 64
HaeIII GGCC 1 cut(s) 295
Hin1II CATG 2 cut(s) 36, 329
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 2 cut(s) 76, 380
HphI GGTGA 2 cut(s) 260, 362
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 131
Hpy188III TCNNGA 1 cut(s) 104
Hpy8I GTNNAC 1 cut(s) 229
HpyAV CCTTC 1 cut(s) 323
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4V TGCA 5 cut(s) 36, 86, 113, 184, 335
HpyF3I CTNAG 1 cut(s) 80
Hsp92II CATG 2 cut(s) 36, 329
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 1 cut(s) 355
LpnPI CCDG 2 cut(s) 251, 309
Lsp1109I GCAGC 1 cut(s) 75
LweI GCATC 2 cut(s) 45, 298
MaeI CTAG 1 cut(s) 143
MaeIII GTNAC 2 cut(s) 248, 360
MalI GATC 1 cut(s) 357
MboI GATC 1 cut(s) 355
MboII GAAGA 2 cut(s) 66, 109
MluCI AATT 4 cut(s) 137, 176, 289, 370
MlyI GAGTC 1 cut(s) 85
MnlI CCTC 1 cut(s) 77
Mph1103I ATGCAT 2 cut(s) 38, 115
MseI TTAA 1 cut(s) 264
MslI CAYNNNNRTG 2 cut(s) 108, 330
MspA1I CMGCKG 1 cut(s) 123
Mva1269I GAATGC 1 cut(s) 113
NdeII GATC 1 cut(s) 355
NlaIII CATG 2 cut(s) 36, 329
NmuCI GTSAC 1 cut(s) 248
NsiI ATGCAT 2 cut(s) 38, 115
PctI GAATGC 1 cut(s) 113
PfeI GAWTC 1 cut(s) 380
PkrI GCNGC 1 cut(s) 65
PleI GAGTC 1 cut(s) 84
PpsI GAGTC 1 cut(s) 84
PspPI GGNCC 1 cut(s) 322
PvuII CAGCTG 1 cut(s) 123
RseI CAYNNNNRTG 2 cut(s) 108, 330
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 1 cut(s) 64
Sau3AI GATC 1 cut(s) 355
Sau96I GGNCC 1 cut(s) 322
SchI GAGTC 1 cut(s) 85
SetI ASST 5 cut(s) 125, 154, 206, 324, 334
SfaNI GCATC 2 cut(s) 45, 298
SinI GGWCC 1 cut(s) 322
SmiMI CAYNNNNRTG 2 cut(s) 108, 330
Sse9I AATT 4 cut(s) 137, 176, 289, 370
SsiI CCGC 1 cut(s) 48
SspMI CTAG 1 cut(s) 143
TaaI ACNGT 1 cut(s) 233
TasI AATT 4 cut(s) 137, 176, 289, 370
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 2 cut(s) 88, 238
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 1 cut(s) 63
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 1 cut(s) 342
TspGWI ACGGA 1 cut(s) 201
TspRI CASTG 2 cut(s) 88, 238
VpaK11BI GGWCC 1 cut(s) 322
XspI CTAG 1 cut(s) 143
Zsp2I ATGCAT 2 cut(s) 38, 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.