Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8337375.1

Orthogroup ID

OG0001940

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 805

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8337375.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 562 bp

ctgaacccagagcctccgcctctgccttcgccatatccaccaacgcttgaagtttgttgtttgattttggaggtgtctgaaaacggagttgtgattgtggcttacgaagctctaaaggtgttcttcttcgaaatggtggctctggaaatgtctgatggagttcatggctacttatgggagtgctattataccatcactgacagctccagtggaaccaaacctccagcgcctgatgctctgattaagcctacagcttcaacatctggtcatcctccaagagaaaaagccaagaggaagagggctgagaagaaggcaatcaagacactgaatgtcacaaccaggtctgacgtctgggcacactttgagaagtttgatcggccaatagtggaagtggtggatggaaagaagcaggatgttggacgtcaagtaagagcaaagtgcaggtattgttctactgaccttgctggagattcttcttttaatggtactagcacattaagaaggcatattgagactgtgtgcaaaaaataccctggtagggctgatatagaggggcagcaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009893 GO:0010310 GO:0010726 GO:0010941 GO:0010942 GO:0016020 GO:0019222 GO:0031323 GO:0031325 GO:0043207 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051194 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0098542 GO:2000377 GO:2000379

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

187

Amino Acids

20.81

Weight (kDa)

8.21

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001940)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0054121 RchiOBHm_Chr5g0075631 RchiOBHm_Chr7g0218761
rosa_laevigata	RLG00000019954
rosa_multiflora	Rmu_co8337375.1_g000001 Rmu_sc0002724.1_g000041 Rmu_sc0003010.1_g000001 Rmu_ssc0000055.1_g000007
rosa_roxburghii	Rroxscaffold_2G00134930 Rroxscaffold_3G00245470
rosa_rugosa	Rorug02G0540100 Rorug04G0078000 Rorug07G0291900
rosa_samantha	Rh1AG017000 Rh1BG425200 Rh1CG073600 Rh1CG400600 Rh1DG047900 Rh1DG080500 Rh1DG458000 Rh2AG189900 Rh2DG158300 Rh2DG556600 Rh3AG195400 Rh3AG237500 Rh3BG189900 Rh3BG225600 Rh3BG288600 Rh3CG179800 Rh3CG220400 Rh3CG270300 Rh3DG221000 Rh4AG241700 Rh5AG065800 Rh5AG087600 Rh5AG472000 Rh5AG542700 Rh5BG423000 Rh5CG282600 Rh5DG082100 Rh6AG078100 Rh6BG094300 Rh6CG332600 Rh6DG209500 Rh7AG037100 Rh7DG465800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	351, 424
Acc36I	ACCTGC	1 cut(s)	432
AciI	CCGC	1 cut(s)	17
AcoI	YGGCCR	1 cut(s)	377
AcyI	GRCGYC	2 cut(s)	348, 421
AfaI	GTAC	1 cut(s)	487
AfiI	CCNNNNNNNGG	1 cut(s)	538
AgsI	TTSAA	2 cut(s)	50, 258
AjnI	CCWGG	2 cut(s)	338, 532
AloI	GAACNNNNNNTCC	2 cut(s)	205, 237
AluBI	AGCT	3 cut(s)	110, 204, 254
AluI	AGCT	3 cut(s)	110, 204, 254
Alw26I	GTCTC	1 cut(s)	506
AlwNI	CAGNNNCTG	1 cut(s)	230
AoxI	GGCC	1 cut(s)	377
ApeKI	GCWGC	1 cut(s)	556
AspLEI	GCGC	1 cut(s)	229
AsuII	TTCGAA	1 cut(s)	129
BaeGI	GKGCMC	1 cut(s)	358
BccI	CCATC	3 cut(s)	149, 200, 392
BciT130I	CCWGG	2 cut(s)	340, 534
BcoDI	GTCTC	1 cut(s)	506
BfaI	CTAG	1 cut(s)	489
BfmI	CTRYAG	1 cut(s)	249
BfoI	RGCGCY	1 cut(s)	230
BfuAI	ACCTGC	1 cut(s)	432
BisI	GCNGC	1 cut(s)	557
BlsI	GCNGC	1 cut(s)	558
Bme1390I	CCNGG	2 cut(s)	340, 534
BmiI	GGNNCC	1 cut(s)	214
BmrFI	CCNGG	2 cut(s)	340, 534
BmsI	GCATC	1 cut(s)	223
BpmI	CTGGAG	3 cut(s)	190, 207, 486
Bpu14I	TTCGAA	1 cut(s)	129
BsaHI	GRCGYC	2 cut(s)	348, 421
BsaJI	CCNNGG	1 cut(s)	532
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bsc4I	CCNNNNNNNGG	1 cut(s)	538
Bse1I	ACTGG	1 cut(s)	207
BseBI	CCWGG	2 cut(s)	340, 534
BseDI	CCNNGG	1 cut(s)	532
BseGI	GGATG	3 cut(s)	268, 403, 418
BseLI	CCNNNNNNNGG	1 cut(s)	538
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	1 cut(s)	207
BseSI	GKGCMC	1 cut(s)	358
BsgI	GTGCAG	1 cut(s)	460
BshFI	GGCC	1 cut(s)	379
BslI	CCNNNNNNNGG	1 cut(s)	538
BsmAI	GTCTC	1 cut(s)	506
BsnI	GGCC	1 cut(s)	379
Bsp119I	TTCGAA	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	1 cut(s)	373
BspACI	CCGC	1 cut(s)	17
BspANI	GGCC	1 cut(s)	379
BspCNI	CTCAG	1 cut(s)	295
BspLI	GGNNCC	1 cut(s)	214
BspMI	ACCTGC	1 cut(s)	432
BspT104I	TTCGAA	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	207
BssECI	CCNNGG	1 cut(s)	532
BssMI	GATC	1 cut(s)	373
BssNI	GRCGYC	2 cut(s)	348, 421
Bst2UI	CCWGG	2 cut(s)	340, 534
Bst4CI	ACNGT	1 cut(s)	517
Bst6I	CTCTTC	1 cut(s)	290
BstACI	GRCGYC	2 cut(s)	348, 421
BstBI	TTCGAA	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	303
BstF5I	GGATG	3 cut(s)	268, 403, 418
BstH2I	RGCGCY	1 cut(s)	230
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	1 cut(s)	376
BstMAI	GTCTC	1 cut(s)	506
BstMBI	GATC	1 cut(s)	373
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 233
BstNI	CCWGG	2 cut(s)	340, 534
BstSCI	CCNGG	2 cut(s)	338, 532
BstSFI	CTRYAG	1 cut(s)	249
BstSLI	GKGCMC	1 cut(s)	358
BsuRI	GGCC	1 cut(s)	379
BtsCI	GGATG	3 cut(s)	268, 403, 418
BtsIMutI	CAGTG	3 cut(s)	195, 214, 323
BveI	ACCTGC	1 cut(s)	432
CaiI	CAGNNNCTG	1 cut(s)	230
CfoI	GCGC	1 cut(s)	229
CsiI	ACCWGGT	1 cut(s)	338
Csp6I	GTAC	1 cut(s)	486
CviAII	CATG	1 cut(s)	164
CviQI	GTAC	1 cut(s)	486
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	1 cut(s)	375
DpnII	GATC	1 cut(s)	373
EaeI	YGGCCR	1 cut(s)	377
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
EciI	GGCGGA	1 cut(s)	6
EcoRII	CCWGG	2 cut(s)	338, 532
FaeI	CATG	1 cut(s)	167
FaiI	YATR	6 cut(s)	34, 165, 175, 189, 507, 548
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FatI	CATG	1 cut(s)	163
Fnu4HI	GCNGC	1 cut(s)	557
FokI	GGATG	3 cut(s)	255, 410, 425
Fsp4HI	GCNGC	1 cut(s)	557
FspBI	CTAG	1 cut(s)	489
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	1 cut(s)	557
GsuI	CTGGAG	3 cut(s)	190, 207, 486
HaeII	RGCGCY	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	379
HhaI	GCGC	1 cut(s)	229
Hin1I	GRCGYC	2 cut(s)	348, 421
Hin1II	CATG	1 cut(s)	167
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HinfI	GANTC	1 cut(s)	470
Hpy188I	TCNGA	4 cut(s)	79, 154, 240, 346
Hpy188III	TCNNGA	2 cut(s)	143, 319
HpyAV	CCTTC	3 cut(s)	36, 304, 495
HpyCH4III	ACNGT	1 cut(s)	517
HpyCH4IV	ACGT	2 cut(s)	348, 421
HpyCH4V	TGCA	2 cut(s)	441, 522
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 233
HpyF3I	CTNAG	1 cut(s)	303
HpySE526I	ACGT	2 cut(s)	348, 421
Hsp92I	GRCGYC	2 cut(s)	348, 421
Hsp92II	CATG	1 cut(s)	167
HspAI	GCGC	1 cut(s)	227
Kzo9I	GATC	1 cut(s)	373
LmnI	GCTCC	1 cut(s)	209
LweI	GCATC	1 cut(s)	223
MabI	ACCWGGT	1 cut(s)	338
MaeI	CTAG	1 cut(s)	489
MaeII	ACGT	2 cut(s)	348, 421
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	1 cut(s)	375
MboI	GATC	1 cut(s)	373
MboII	GAAGA	5 cut(s)	115, 118, 307, 319, 465
MhlI	GDGCHC	1 cut(s)	358
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	8 cut(s)	24, 30, 64, 231, 282, 285, 291, 544
MseI	TTAA	3 cut(s)	243, 480, 497
MspR9I	CCNGG	2 cut(s)	340, 534
MvaI	CCWGG	2 cut(s)	340, 534
MwoI	GCNNNNNNNGC	2 cut(s)	107, 233
NdeII	GATC	1 cut(s)	373
NlaIII	CATG	1 cut(s)	167
NlaIV	GGNNCC	1 cut(s)	214
NmuCI	GTSAC	1 cut(s)	331
NspV	TTCGAA	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	470
PkrI	GCNGC	1 cut(s)	558
Psp6I	CCWGG	2 cut(s)	338, 532
PspGI	CCWGG	2 cut(s)	338, 532
PspN4I	GGNNCC	1 cut(s)	214
PstNI	CAGNNNCTG	1 cut(s)	230
RsaI	GTAC	1 cut(s)	487
RsaNI	GTAC	1 cut(s)	486
SaqAI	TTAA	3 cut(s)	243, 480, 497
SatI	GCNGC	1 cut(s)	557
Sau3AI	GATC	1 cut(s)	373
ScrFI	CCNGG	2 cut(s)	340, 534
SduI	GDGCHC	1 cut(s)	358
SexAI	ACCWGGT	1 cut(s)	338
SfaNI	GCATC	1 cut(s)	223
SfcI	CTRYAG	1 cut(s)	249
SfuI	TTCGAA	1 cut(s)	129
SsiI	CCGC	1 cut(s)	17
SspMI	CTAG	1 cut(s)	489
StyD4I	CCNGG	2 cut(s)	338, 532
TaaI	ACNGT	1 cut(s)	517
TaiI	ACGT	2 cut(s)	351, 424
TaqI	TCGA	1 cut(s)	129
TfiI	GAWTC	1 cut(s)	470
Tru1I	TTAA	3 cut(s)	243, 480, 497
Tru9I	TTAA	3 cut(s)	243, 480, 497
TscAI	CASTG	3 cut(s)	202, 214, 330
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	1 cut(s)	556
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	1 cut(s)	152
TspGWI	ACGGA	1 cut(s)	99
TspRI	CASTG	3 cut(s)	202, 214, 330
XspI	CTAG	1 cut(s)	489
ZraI	GACGTC	2 cut(s)	349, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.