Rh3CG270300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0001940
Physical Location & Seq
Forward (+)
26663484 .. 26666136
2653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG270300.1

Sequence Viewer

Length: 234 bp
ATGGCCACCGATGGGAATGCTATTGTACCATCGCCGAAAGCTCCAGCTGAACCAAACTCGGGAGCTCCTGAGGCTCCGCCTACGGCTCCAACATCTGCTTGTCCTCCTAGACCATCAAAAAGCAAGAGAAAGCGGGCTGAAAAGAAGGCAGCGAAGCCACTGAAGGTCACAGCCAGGGACAAGTGTGGAAGCCAATTAATGGATGGCTACATTGTTGGTGAACTGCTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

7.97

Weight (kDa)

9.51

Isoelectric Point (pI)

54.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 199
AciI CCGC 2 cut(s) 77, 133
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 182
AfaI GTAC 1 cut(s) 27
AfiI CCNNNNNNNGG 3 cut(s) 12, 59, 199
AjnI CCWGG 1 cut(s) 173
AluBI AGCT 3 cut(s) 41, 47, 65
AluI AGCT 3 cut(s) 41, 47, 65
Alw21I GWGCWC 1 cut(s) 67
Ama87I CYCGRG 1 cut(s) 58
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 149
AseI ATTAAT 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 230
AvaI CYCGRG 1 cut(s) 58
AxyI CCTNAGG 1 cut(s) 69
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 67
Bbv12I GWGCWC 1 cut(s) 67
BbvI GCAGC 1 cut(s) 161
BccI CCATC 4 cut(s) 5, 37, 121, 197
BceAI ACGGC 1 cut(s) 99
BcgI CGANNNNNNTGC 1 cut(s) 33
BciT130I CCWGG 1 cut(s) 175
BfaI CTAG 1 cut(s) 108
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 1 cut(s) 175
BmeT110I CYCGRG 1 cut(s) 58
BmiI GGNNCC 2 cut(s) 75, 87
BmrFI CCNGG 1 cut(s) 175
BpmI CTGGAG 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 174
Bsc4I CCNNNNNNNGG 3 cut(s) 12, 59, 199
Bse21I CCTNAGG 1 cut(s) 69
BseBI CCWGG 1 cut(s) 175
BseDI CCNNGG 1 cut(s) 174
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 3 cut(s) 12, 59, 199
BseMII CTCAG 1 cut(s) 60
BseXI GCAGC 1 cut(s) 161
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 67
BsiHKCI CYCGRG 1 cut(s) 58
BslFI GGGAC 1 cut(s) 191
BslI CCNNNNNNNGG 3 cut(s) 12, 59, 199
BsmFI GGGAC 1 cut(s) 191
BsmI GAATGC 1 cut(s) 22
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 58
Bsp1286I GDGCHC 1 cut(s) 67
BspACI CCGC 2 cut(s) 77, 133
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 61
BspLI GGNNCC 2 cut(s) 75, 87
BssECI CCNNGG 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 175
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 208
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNI CCWGG 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 173
BstV1I GCAGC 1 cut(s) 161
Bsu36I CCTNAGG 1 cut(s) 69
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 15
BtsCI GGATG 1 cut(s) 208
BtsIMutI CAGTG 1 cut(s) 158
Cac8I GCNNGC 1 cut(s) 135
Csp6I GTAC 1 cut(s) 26
CviQI GTAC 1 cut(s) 26
DdeI CTNAG 1 cut(s) 69
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 66
Ecl136II GAGCTC 1 cut(s) 65
Eco24I GRGCYC 1 cut(s) 67
Eco53kI GAGCTC 1 cut(s) 65
Eco57I CTGAAG 1 cut(s) 182
Eco81I CCTNAGG 1 cut(s) 69
Eco88I CYCGRG 1 cut(s) 58
EcoICRI GAGCTC 1 cut(s) 65
EcoRII CCWGG 1 cut(s) 173
EcoT38I GRGCYC 1 cut(s) 67
FaqI GGGAC 1 cut(s) 191
FauI CCCGC 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 1 cut(s) 215
FriOI GRGCYC 1 cut(s) 67
Fsp4HI GCNGC 1 cut(s) 150
FspBI CTAG 1 cut(s) 108
GluI GCNGC 1 cut(s) 150
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 1 cut(s) 5
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 1 cut(s) 221
Hpy188III TCNNGA 2 cut(s) 60, 68
Hpy8I GTNNAC 1 cut(s) 221
HpyAV CCTTC 2 cut(s) 139, 157
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 69
LmnI GCTCC 5 cut(s) 46, 62, 70, 79, 91
LpnPI CCDG 5 cut(s) 57, 81, 160, 187, 212
Lsp1109I GCAGC 1 cut(s) 161
MaeI CTAG 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 67
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 194
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 2 cut(s) 64, 114
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 197
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 175
Mva1269I GAATGC 1 cut(s) 22
MvaI CCWGG 1 cut(s) 175
MwoI GCNNNNNNNGC 1 cut(s) 71
NlaIV GGNNCC 2 cut(s) 75, 87
NmuCI GTSAC 1 cut(s) 166
PctI GAATGC 1 cut(s) 22
PflMI CCANNNNNTGG 1 cut(s) 199
PkrI GCNGC 1 cut(s) 151
PshBI ATTAAT 1 cut(s) 197
Psp124BI GAGCTC 1 cut(s) 67
Psp6I CCWGG 1 cut(s) 173
PspGI CCWGG 1 cut(s) 173
PspN4I GGNNCC 2 cut(s) 75, 87
PvuII CAGCTG 1 cut(s) 47
RsaI GTAC 1 cut(s) 27
RsaNI GTAC 1 cut(s) 26
SacI GAGCTC 1 cut(s) 67
SaqAI TTAA 1 cut(s) 197
SatI GCNGC 1 cut(s) 150
ScrFI CCNGG 1 cut(s) 175
SduI GDGCHC 1 cut(s) 67
SetI ASST 4 cut(s) 43, 49, 67, 168
Sse9I AATT 1 cut(s) 194
SsiI CCGC 2 cut(s) 77, 133
SspMI CTAG 1 cut(s) 108
SstI GAGCTC 1 cut(s) 67
StyD4I CCNGG 1 cut(s) 173
TasI AATT 1 cut(s) 194
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TscAI CASTG 1 cut(s) 165
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 166
TspRI CASTG 1 cut(s) 165
Van91I CCANNNNNTGG 1 cut(s) 199
VspI ATTAAT 1 cut(s) 197
XcmI CCANNNNNNNNNTGG 1 cut(s) 200
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.