Rroxscaffold_3G00245470

DNA methyltransferase 1-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001940
Physical Location & Seq
Reverse (-)
38495251 .. 38500721
5471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00245470.1

Sequence Viewer

Length: 732 bp
ATGTCAAGGACATCTTGGGTTTGCTCAAAACCATGCATCCCTTGTAGCGGGAGAAGAAATCGCAGCCTCGCAAGGAGTCTCGGTGCAAACCCTATGGCATTTCACGAGGTCTCTACCCTAAATGGCGGTGTGCAGTCACAGCTCAAAAAGGCCCTCCAACCAGTTGAGAAGGTTATTAGGTGTCGACAATGGCTTCCTTTTACAAATTCTGCATGGAATGATGACTTACATCTTTTACCATTGGCTGTCAATGGTGGCCTACCTATTGGTGACTATTCCTTTGCTAAGAATAACAAGGTTGTTACAGTGGGCATTGTGGGAGGATCCAACCTTTCTAAGATAACAAAGCAGCTTGGAAATACAGGAGTCTATGCAAAGGAGTATCTGGATTATTCTTTTGCCTCTGTTCCTGGTTTTGTTGCTTGGTATATTGGGAGCAGTGAGCGATCAAAATCTACAAATTTTCTGGACTCAGGTGTACTGTCTATATATTGTTTTGCACGATACAACAAGGGTGATGAGTCTTCGAGAGACCGCTCCGGTAGAATCAAGGGCAGAGGAGAAGTAGAAGAGGGAGATGCCATGAAATCTTTGGAGAACATATGCTTGGATTCAAAAAGGGGGATGGATACGCTTGCCACTTTGGATGAGATGAAGTCCATGAAGGTAGATGCCTCGATAGTTGTTACCGTTGTACATAGCACCTACATATTCATGTTGCAAGTTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000123 GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0000981 GO:0001085 GO:0001103 GO:0003674 GO:0003700 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0034641 GO:0035267 GO:0036211 GO:0042306 GO:0042307 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045892 GO:0045934 GO:0046483 GO:0046822 GO:0046824 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051049 GO:0051050 GO:0051171 GO:0051172 GO:0051222 GO:0051223 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070491 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0090316 GO:0097346 GO:0140110 GO:1900180 GO:1900182 GO:1901360 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904949 GO:1904951 GO:1990234 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DMAP1 SANT_DAMP1_like

Protein Analysis

243

Amino Acids

26.67

Weight (kDa)

9.2

Isoelectric Point (pI)

37.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 537
AccI GTMKAC 1 cut(s) 184
AciI CCGC 3 cut(s) 48, 126, 535
AclWI GGATC 2 cut(s) 318, 331
AcsI RAATTY 2 cut(s) 205, 460
AfaI GTAC 2 cut(s) 480, 696
AfiI CCNNNNNNNGG 1 cut(s) 47
AgsI TTSAA 1 cut(s) 615
AjnI CCWGG 1 cut(s) 409
AjuI GAANNNNNNNTTGG 2 cut(s) 590, 622
AluBI AGCT 2 cut(s) 142, 352
AluI AGCT 2 cut(s) 142, 352
Alw26I GTCTC 3 cut(s) 83, 115, 525
AlwI GGATC 2 cut(s) 318, 331
AoxI GGCC 2 cut(s) 150, 256
ApeKI GCWGC 2 cut(s) 63, 349
ApoI RAATTY 2 cut(s) 205, 460
ArsI GACNNNNNNTTYG 2 cut(s) 263, 295
AspS9I GGNCC 1 cut(s) 151
AsuHPI GGTGA 2 cut(s) 281, 527
BamHI GGATCC 1 cut(s) 323
BauI CACGAG 1 cut(s) 104
BbsI GAAGAC 1 cut(s) 516
BbvI GCAGC 2 cut(s) 75, 361
BccI CCATC 1 cut(s) 619
BciT130I CCWGG 1 cut(s) 411
BciVI GTATCC 1 cut(s) 622
BcoDI GTCTC 3 cut(s) 83, 115, 525
BfuI GTATCC 1 cut(s) 622
BisI GCNGC 2 cut(s) 64, 350
BlsI GCNGC 2 cut(s) 65, 351
Bme1390I CCNGG 1 cut(s) 411
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 1 cut(s) 325
BmrFI CCNGG 1 cut(s) 411
BmsI GCATC 3 cut(s) 45, 568, 661
BpiI GAAGAC 1 cut(s) 516
BsaBI GATNNNNATC 1 cut(s) 451
BsaI GGTCTC 2 cut(s) 115, 525
BsaWI WCCGGW 1 cut(s) 539
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 161
Bse8I GATNNNNATC 1 cut(s) 451
BseBI CCWGG 1 cut(s) 411
BseGI GGATG 3 cut(s) 36, 630, 652
BseJI GATNNNNATC 1 cut(s) 451
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMII CTCAG 1 cut(s) 486
BseNI ACTGG 1 cut(s) 161
BseRI GAGGAG 1 cut(s) 573
BseXI GCAGC 2 cut(s) 75, 361
BsgI GTGCAG 1 cut(s) 152
BshFI GGCC 2 cut(s) 152, 258
BsiSI CCGG 1 cut(s) 540
BslI CCNNNNNNNGG 1 cut(s) 47
BsmAI GTCTC 3 cut(s) 83, 115, 525
BsnI GGCC 2 cut(s) 152, 258
Bso31I GGTCTC 2 cut(s) 115, 525
Bsp1407I TGTACA 1 cut(s) 694
Bsp143I GATC 2 cut(s) 323, 446
BspACI CCGC 3 cut(s) 48, 126, 535
BspANI GGCC 2 cut(s) 152, 258
BspCNI CTCAG 1 cut(s) 485
BspLI GGNNCC 1 cut(s) 325
BspPI GGATC 2 cut(s) 318, 331
BspTNI GGTCTC 2 cut(s) 115, 525
BsrBI CCGCTC 1 cut(s) 537
BsrGI TGTACA 1 cut(s) 694
BsrI ACTGG 1 cut(s) 161
BssMI GATC 2 cut(s) 323, 446
BssSI CACGAG 1 cut(s) 104
Bst2BI CACGAG 1 cut(s) 104
Bst2UI CCWGG 1 cut(s) 411
Bst4CI ACNGT 3 cut(s) 307, 483, 691
Bst6I CTCTTC 1 cut(s) 564
BstAUI TGTACA 1 cut(s) 694
BstC8I GCNNGC 1 cut(s) 636
BstDEI CTNAG 3 cut(s) 285, 336, 472
BstF5I GGATG 3 cut(s) 36, 630, 652
BstKTI GATC 2 cut(s) 326, 449
BstMAI GTCTC 3 cut(s) 83, 115, 525
BstMBI GATC 2 cut(s) 323, 446
BstMWI GCNNNNNNNGC 1 cut(s) 139
BstNI CCWGG 1 cut(s) 411
BstSCI CCNGG 1 cut(s) 409
BstV1I GCAGC 2 cut(s) 75, 361
BstV2I GAAGAC 1 cut(s) 516
BstX2I RGATCY 1 cut(s) 323
BstYI RGATCY 1 cut(s) 323
BsuI GTATCC 1 cut(s) 622
BsuRI GGCC 2 cut(s) 152, 258
BtsCI GGATG 3 cut(s) 36, 630, 652
BtsI GCAGTG 1 cut(s) 445
BtsIMutI CAGTG 2 cut(s) 312, 445
Cac8I GCNNGC 1 cut(s) 636
Cfr13I GGNCC 1 cut(s) 151
Csp6I GTAC 2 cut(s) 479, 695
CviAII CATG 5 cut(s) 33, 213, 583, 661, 715
CviJI RGCY 7 cut(s) 66, 142, 152, 193, 245, 258, 352
CviKI_1 RGCY 7 cut(s) 66, 142, 152, 193, 245, 258, 352
CviQI GTAC 2 cut(s) 479, 695
DdeI CTNAG 3 cut(s) 285, 336, 472
DpnI GATC 2 cut(s) 325, 448
DpnII GATC 2 cut(s) 323, 446
Eam1104I CTCTTC 1 cut(s) 564
EarI CTCTTC 1 cut(s) 564
Eco31I GGTCTC 2 cut(s) 115, 525
EcoO109I RGGNCCY 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 409
EcoT22I ATGCAT 1 cut(s) 38
FaeI CATG 5 cut(s) 36, 216, 586, 664, 718
FalI AAGNNNNNCTT 1 cut(s) 30
FatI CATG 5 cut(s) 32, 212, 582, 660, 714
FauI CCCGC 1 cut(s) 41
FauNDI CATATG 1 cut(s) 602
FblI GTMKAC 1 cut(s) 184
Fnu4HI GCNGC 2 cut(s) 64, 350
FokI GGATG 3 cut(s) 23, 637, 659
Fsp4HI GCNGC 2 cut(s) 64, 350
GluI GCNGC 2 cut(s) 64, 350
HaeIII GGCC 2 cut(s) 152, 258
HapII CCGG 1 cut(s) 540
Hin1II CATG 5 cut(s) 36, 216, 586, 664, 718
HincII GTYRAC 1 cut(s) 185
HindII GTYRAC 1 cut(s) 185
HinfI GANTC 6 cut(s) 76, 366, 470, 521, 546, 611
HpaII CCGG 1 cut(s) 540
HphI GGTGA 2 cut(s) 281, 527
Hpy166II GTNNAC 2 cut(s) 185, 479
Hpy188III TCNNGA 4 cut(s) 104, 386, 467, 528
Hpy8I GTNNAC 2 cut(s) 185, 479
HpyAV CCTTC 2 cut(s) 163, 658
HpyCH4III ACNGT 3 cut(s) 307, 483, 691
HpyCH4V TGCA 7 cut(s) 36, 86, 133, 212, 374, 500, 721
HpyF10VI GCNNNNNNNGC 1 cut(s) 139
HpyF3I CTNAG 3 cut(s) 285, 336, 472
Hsp92II CATG 5 cut(s) 36, 216, 586, 664, 718
Kzo9I GATC 2 cut(s) 323, 446
LmnI GCTCC 2 cut(s) 435, 542
LpnPI CCDG 8 cut(s) 174, 348, 371, 396, 423, 452, 459, 553
Lsp1109I GCAGC 2 cut(s) 75, 361
LweI GCATC 3 cut(s) 45, 568, 661
MaeIII GTNAC 4 cut(s) 135, 269, 301, 685
MalI GATC 2 cut(s) 325, 448
MbiI CCGCTC 1 cut(s) 537
MboI GATC 2 cut(s) 323, 446
MboII GAAGA 3 cut(s) 66, 516, 581
MflI RGATCY 1 cut(s) 323
MluCI AATT 2 cut(s) 205, 460
MlyI GAGTC 4 cut(s) 85, 375, 464, 530
MmeI TCCRAC 2 cut(s) 181, 351
MnlI CCTC 8 cut(s) 77, 100, 164, 314, 412, 551, 565, 685
Mph1103I ATGCAT 1 cut(s) 38
MslI CAYNNNNRTG 1 cut(s) 713
MspI CCGG 1 cut(s) 540
MspR9I CCNGG 1 cut(s) 411
MvaI CCWGG 1 cut(s) 411
MwoI GCNNNNNNNGC 1 cut(s) 139
NdeI CATATG 1 cut(s) 602
NdeII GATC 2 cut(s) 323, 446
NlaIII CATG 5 cut(s) 36, 216, 586, 664, 718
NlaIV GGNNCC 1 cut(s) 325
NmuCI GTSAC 2 cut(s) 135, 269
NsiI ATGCAT 1 cut(s) 38
PfeI GAWTC 2 cut(s) 546, 611
PkrI GCNGC 2 cut(s) 65, 351
PleI GAGTC 4 cut(s) 84, 374, 464, 529
PpsI GAGTC 4 cut(s) 84, 374, 464, 529
Psp6I CCWGG 1 cut(s) 409
PspGI CCWGG 1 cut(s) 409
PspN4I GGNNCC 1 cut(s) 325
PspPI GGNCC 1 cut(s) 151
PsuI RGATCY 1 cut(s) 323
RsaI GTAC 2 cut(s) 480, 696
RsaNI GTAC 2 cut(s) 479, 695
RseI CAYNNNNRTG 1 cut(s) 713
SalI GTCGAC 1 cut(s) 183
SatI GCNGC 2 cut(s) 64, 350
Sau3AI GATC 2 cut(s) 323, 446
Sau96I GGNCC 1 cut(s) 151
SchI GAGTC 4 cut(s) 85, 375, 464, 530
ScrFI CCNGG 1 cut(s) 411
SfaNI GCATC 3 cut(s) 45, 568, 661
SmiMI CAYNNNNRTG 1 cut(s) 713
Sse9I AATT 2 cut(s) 205, 460
SsiI CCGC 3 cut(s) 48, 126, 535
StyD4I CCNGG 1 cut(s) 409
TaaI ACNGT 3 cut(s) 307, 483, 691
TaqI TCGA 3 cut(s) 184, 527, 677
TasI AATT 2 cut(s) 205, 460
TatI WGTACW 2 cut(s) 478, 694
TfiI GAWTC 2 cut(s) 546, 611
TscAI CASTG 2 cut(s) 312, 445
TseFI GTSAC 2 cut(s) 135, 269
TseI GCWGC 2 cut(s) 63, 349
Tsp45I GTSAC 2 cut(s) 135, 269
TspDTI ATGAA 5 cut(s) 599, 668, 677, 703, 717
TspRI CASTG 2 cut(s) 312, 445
XapI RAATTY 2 cut(s) 205, 460
XcmI CCANNNNNNNNNTGG 1 cut(s) 589
XmiI GTMKAC 1 cut(s) 184
Zsp2I ATGCAT 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.